EWM20642.1, cds10033 (CDS) Nannochloropsis gaditana

Overview
NameEWM20642.1
Unique Namecds10033
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:47990..48188 +
Alignment locationKK037261.1:48313..48767 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20642.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100228g8.4659.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:47990..48188 +
KK037261.1supercontigKK037261.1:48313..48767 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20642.1 vs. NCBI_GenBank
Match: gi|585100440|gb|EWM20642.1| (hypothetical protein Naga_100228g8 [Nannochloropsis gaditana])

HSP 1 Score: 415.231 bits (1066), Expect = 2.352e-146
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 
Query:    1 MSPLRTQLLDVHCFPAQCPPCQSLLHLPGRREERMKAVRPPPPPPPLPPPPPPRLLLHLPHLPEVQEEAHLRHQLLHVEAKENEEKKVTNEKKGIGGEGARPPPNGSSGSTRTGGGKRGSEKGGEGKKGEETDATIQSHPPAHHEDVGGEAEVGKEREGGREEGREEGREDAREEGTGTTGTPGSGPGRRRGNAGRREGREEWRVGMTGGKRTGGAR 217
            MSPLRTQLLDVHCFPAQCPPCQSLLHLPGRREERMKAVRPPPPPPPLPPPPPPRLLLHLPHLPEVQEEAHLRHQLLHVEAKENEEKKVTNEKKGIGGEGARPPPNGSSGSTRTGGGKRGSEKGGEGKKGEETDATIQSHPPAHHEDVGGEAEVGKEREGGREEGREEGREDAREEGTGTTGTPGSGPGRRRGNAGRREGREEWRVGMTGGKRTGGAR
Sbjct:    1 MSPLRTQLLDVHCFPAQCPPCQSLLHLPGRREERMKAVRPPPPPPPLPPPPPPRLLLHLPHLPEVQEEAHLRHQLLHVEAKENEEKKVTNEKKGIGGEGARPPPNGSSGSTRTGGGKRGSEKGGEGKKGEETDATIQSHPPAHHEDVGGEAEVGKEREGGREEGREEGREDAREEGTGTTGTPGSGPGRRRGNAGRREGREEWRVGMTGGKRTGGAR 217
The following BLAST results are available for this feature:
BLAST of EWM20642.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100440|gb|EWM20642.1|2.352e-146100.00hypothetical protein Naga_100228g8 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10064rna10064Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications