EWM20645.1, cds10031 (CDS) Nannochloropsis gaditana

Overview
NameEWM20645.1
Unique Namecds10031
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:32174..32431 +
Alignment locationKK037261.1:32731..32823 +
Alignment locationKK037261.1:33137..33220 +
Alignment locationKK037261.1:33379..33489 +
Alignment locationKK037261.1:33697..33738 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20645.1
Productthioredoxin
Orig transcript idgnl|cribi|Naga_100228g4.4662.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:32174..32431 +
KK037261.1supercontigKK037261.1:32731..32823 +
KK037261.1supercontigKK037261.1:33137..33220 +
KK037261.1supercontigKK037261.1:33379..33489 +
KK037261.1supercontigKK037261.1:33697..33738 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|585100443|gb|EWM20645.1| (thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 404.445 bits (1038), Expect = 6.793e-143
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MAPPGRRRLVILLRLIMGALVSLATCQAFLGFSYSSQRIATPGSTALRMHQLQPLLNTPLRFGCGSRRVLRLFAGEKGGEEDALIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYKKMQ 195
            MAPPGRRRLVILLRLIMGALVSLATCQAFLGFSYSSQRIATPGSTALRMHQLQPLLNTPLRFGCGSRRVLRLFAGEKGGEEDALIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYKKMQ
Sbjct:    1 MAPPGRRRLVILLRLIMGALVSLATCQAFLGFSYSSQRIATPGSTALRMHQLQPLLNTPLRFGCGSRRVLRLFAGEKGGEEDALIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYKKMQ 195          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|553189771|ref|XP_005855071.1| (thioredoxin, partial [Nannochloropsis gaditana CCMP526] >gi|422293994|gb|EKU21294.1| thioredoxin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 232.261 bits (591), Expect = 5.756e-76
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0
Query:   87 DIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYKKMQ 195
            DIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYKKMQ
Sbjct:    1 DIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYKKMQ 109          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|918997848|ref|XP_013394301.1| (PREDICTED: thioredoxin-like [Lingula anatina])

HSP 1 Score: 65.4698 bits (158), Expect = 1.578e-10
Identity = 33/102 (32.35%), Postives = 51/102 (50.00%), Query Frame = 0
Query:   88 IATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSK---VEDFGVSIKKLNGLLE 186
            +  LEE +AA+  +   K LV+ F+A WC  CK+ AP  ++    Y++  D   V+V    DI     ++ +P  H Y  G +    E  G S +KL GL +
Sbjct:    4 LNNLEEFKAAVAATSNGKILVIDFYAEWCGPCKKIAPCLEKLAEKYKDKADVYKVNVDDADDIAAHCKISAMPTFHVYKNGKEEKACELVGASEEKLKGLFD 105          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|926520643|ref|XP_013809439.1| (PREDICTED: thioredoxin [Apteryx australis mantelli])

HSP 1 Score: 62.3882 bits (150), Expect = 1.631e-9
Identity = 32/106 (30.19%), Postives = 56/106 (52.83%), Query Frame = 0
Query:   84 LIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDF-GVSIKKLNGLLERL 188
            ++  +  L E EA ++++G  K +V+ F A+WC  CK   P +      + E   F+++DV   +D+ M   +  +P   FY  G KV++F G + +KL   +E L
Sbjct:    1 MVKSVGNLSEFEAELKSAGE-KLVVIDFSATWCGPCKTIKPFFHSLCEKFGEVV-FIEIDVDDAQDVAMHCDVKCMPTFQFYKNGKKVQEFSGANREKLEETIESL 104          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|1041128773|ref|XP_017288669.1| (PREDICTED: thioredoxin [Kryptolebias marmoratus])

HSP 1 Score: 62.3882 bits (150), Expect = 1.689e-9
Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 0
Query:   84 LIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFG 175
            ++  I    E +A + ++G  + +V+ F ASWC  CK  AP +QQ    Y++   F+ VDV    D+  A G++ +P   FY  G KV +F 
Sbjct:    1 MVRHINNKSEFDAILASAGD-QLVVVDFTASWCGPCKGIAPYFQQLSEEYKDKVIFLKVDVDEASDVSQACGISCMPTFQFYKNGQKVHEFS 91          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|1062154300|gb|ODO00912.1| (thioredoxin [Cryptococcus depauperatus CBS 7855])

HSP 1 Score: 65.855 bits (159), Expect = 2.914e-9
Identity = 40/130 (30.77%), Postives = 65/130 (50.00%), Query Frame = 0
Query:   62 FGCGSRRVLRLFAGEKGGEEDALIGDIATLEELE---AAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDF-GVSIKKLNGLLER 187
            FG  + R   ++  E+  E   ++ +    EE E     +++   T+ LV+ FHASWC  C   AP  +Q  N Y ++  FV +DV  +R++     +T +P   F  GG +VE   G S  +LN ++ R
Sbjct:   72 FGSVAARPGIMWTSEERAERRRVVDERLKAEEKEQFDGIVRSLPPTQLLVVDFHASWCGPCHAIAPVVEQLANTY-KHAKFVKIDVDRQRELASRFKITAMPTFKFLKGGREVETLRGASPPQLNSIVSR 200          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|391358072|gb|AFM43654.1| (thioredoxin 1 [Mytilus galloprovincialis])

HSP 1 Score: 61.6178 bits (148), Expect = 4.238e-9
Identity = 32/101 (31.68%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   88 IATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDF-GVSIKKLNGLLER 187
            I +  E +  ++ SG T  +V+ F A+WC  C + AP +Q+  + Y +   F+ VDV    D+    G++ +P    Y  G+KV++  G S +KL G++E+
Sbjct:    5 IGSKAEFDGVVKGSGDT-LIVVDFFATWCGPCVQIAPVYQKLSDEYSDCI-FLKVDVDEVEDVAAESGISAMPTFQCYKNGNKVDEIVGASEEKLRGMIEK 103          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|297325368|gb|EFH55788.1| (hypothetical protein ARALYDRAFT_482466 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 63.5438 bits (153), Expect = 4.524e-9
Identity = 39/123 (31.71%), Postives = 61/123 (49.59%), Query Frame = 0
Query:   71 RLFAGEKGGEEDALIGDIATLEELEAAI-QTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDF-VDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKV-EDFGVSIKKLNGLLERLDK 190
            R F  E GGE   +I  + + EE   A+ +    + P +  F A+WC  C+  +P   +    Y +   + VD+D  G  + I  + +T +P  HF+ GGSK  E  G  + KL  L+E+L K
Sbjct:   74 RSFGSEAGGENGVVI--VKSEEEFINAMGKAQDGSLPSIFYFTAAWCGPCRFISPVIVELSKQYPDVTTYKVDIDEDGISNTISKLNITSVPTLHFFKGGSKKGEVVGADVTKLKNLMEQLYK 194          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|58331956|ref|NP_001011127.1| (thioredoxin [Xenopus tropicalis] >gi|54038274|gb|AAH84527.1| hypothetical LOC496541 [Xenopus tropicalis])

HSP 1 Score: 61.2326 bits (147), Expect = 5.118e-9
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 0
Query:   84 LIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFV--DVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDF-GVSIKKLNGLLERL 188
            ++  +A++EE + A++ +G  K +V+ F A WC  C+R AP +++      E+ D V   VDV    D+    G++ +P   F+  G +VE F G  IKKL   ++RL
Sbjct:    1 MVKYLASVEEYQCALKDAGE-KLVVIDFTAKWCGPCQRIAPDFEKLST---EFPDIVLYKVDVDDASDVAQVCGISSMPTFIFFKSGKQVERFSGADIKKLKETIKRL 104          
BLAST of EWM20645.1 vs. NCBI_GenBank
Match: gi|303271529|ref|XP_003055126.1| (hypothetical protein MICPUCDRAFT_24412 [Micromonas pusilla CCMP1545] >gi|226463100|gb|EEH60378.1| hypothetical protein MICPUCDRAFT_24412 [Micromonas pusilla CCMP1545])

HSP 1 Score: 62.003 bits (149), Expect = 5.937e-9
Identity = 38/113 (33.63%), Postives = 65/113 (57.52%), Query Frame = 0
Query:   82 DALIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFD--FVDVDVTGKRDIIMAMGLTVLPHSHFYVGGS-KVEDFGVSIKKLNGLLERLDKY 191
            D +I D+   EE   A++ +G  + +++ F+A WC AC+   P   + + + EE  D  FV V+    +++  +MG+ +LP  HFY G   KVE+F  SI K+  L E+++K+
Sbjct:   20 DNMI-DVNGTEEFLQALKEAGD-RLVIVDFYARWCGACRGLFPKLCK-IASQEENKDILFVKVEFDDNKEMCRSMGVKILPFFHFYKGKEGKVEEFSASISKIKLLREKIEKH 129          
The following BLAST results are available for this feature:
BLAST of EWM20645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100443|gb|EWM20645.1|6.793e-143100.00thioredoxin [Nannochloropsis gaditana][more]
gi|553189771|ref|XP_005855071.1|5.756e-76100.00thioredoxin, partial [Nannochloropsis gaditana CCM... [more]
gi|918997848|ref|XP_013394301.1|1.578e-1032.35PREDICTED: thioredoxin-like [Lingula anatina][more]
gi|926520643|ref|XP_013809439.1|1.631e-930.19PREDICTED: thioredoxin [Apteryx australis mantelli... [more]
gi|1041128773|ref|XP_017288669.1|1.689e-933.70PREDICTED: thioredoxin [Kryptolebias marmoratus][more]
gi|1062154300|gb|ODO00912.1|2.914e-930.77thioredoxin [Cryptococcus depauperatus CBS 7855][more]
gi|391358072|gb|AFM43654.1|4.238e-931.68thioredoxin 1 [Mytilus galloprovincialis][more]
gi|297325368|gb|EFH55788.1|4.524e-931.71hypothetical protein ARALYDRAFT_482466 [Arabidopsi... [more]
gi|58331956|ref|NP_001011127.1|5.118e-933.33thioredoxin [Xenopus tropicalis] >gi|54038274|gb|A... [more]
gi|303271529|ref|XP_003055126.1|5.937e-933.63hypothetical protein MICPUCDRAFT_24412 [Micromonas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10062rna10062Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications