rna10062, rna10062 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10062
Unique Name	rna10062
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	780
Alignment location	KK037261.1:31880..34448 +

Link to JBrowse

Properties


Property Name	Value
Product	thioredoxin
Orig transcript id	gnl\|cribi\|Naga_100228g4.4662.mrna
Orig protein id	gnl\|cribi\|Naga_100228g4.4662
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037261.1	supercontig	KK037261.1:31880..34448 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100228g4	gene9763	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10062	rna10062-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20645.1	cds10031	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037261.1:31880..34448+
coding sequence from alignment at KK037261.1:31880..34448+

mRNA sequence

>rna10062 ID=rna10062|Name=rna10062|organism=Nannochloropsis gaditana|type=mRNA|length=780bp
ATGAGTGGCACCATGAGCTCGATCTCCAGACCTCCTCTGGTGGTGGCGGT
GGATTTGGACGAGGTGCTTGGCTTGTTCGTGGAGACCCTTGCTCGCTTTC
ACAATGAGGTGTATGGAGGCTCCTTGACGGCGGACGATTTCCACAGTTAC
GACTTTGTGCACGTGTGGGGGGGCACCCGGGAGGAGGCGAACGCGAAAGT
GCTGGCCTTTTTCAAGTCCAGCCATTTCCAGGCGTCGACTTTCATGTGGT
CACCTCCCGCCAGTTTTGCATCCAACGAGAGACAGAGGAGTGGGTGCAAA
AGCATTATCCGGGTATCTTTACCGGCCTCCACTACGGCAACCACTACTCG
GCCACTGGACCCCAACGCTCTAAAGGGGACATGTGCCAGGCCATCAAGGC
TCAGCTCCTGGTTGACGACTCCCTCCGATATGCCCACCAAGTCGCTCAAG
ACGCTGGCATTCCAGTCCTCCTCTTTGGAGACTATGCTTGGAATCAAGCG
GACCCGTCTCTTCCTCCCTCCTCCCTGCCTCCGTCCATCACCCGTGTCAC
GCGGTGGGAGGATGTCCGCGTGCACATCGAGGCATTGCTGGCCAGCCATC
GGCAGCAACATAGAGAGAGAGGTGGTGGTGAGACGTAAGAAATGTGGAAA
AGAGGGAATAAGCCAAGATGAAGAGGAATCAGAATGGAGGAGGAGATGTG
AGTATTCAAGGAACTCAGCAAGGATTTTAAAAGTTTTTCTATCTTTATTC
ACAGCAGTATTGAATCAAAGTAGTCTTTAA

protein sequence of rna10062

>rna10062-protein ID=rna10062-protein|Name=rna10062|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MAPPGRRRLVILLRLIMGALVSLATCQAFLGFSYSSQRIATPGSTALRMH
QLQPLLNTPLRFGCGSRRVLRLFAGEKGGEEDALIGDIATLEELEAAIQT
SGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDI
IMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYKKMQ

mRNA from alignment at KK037261.1:31880..34448+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10062 ID=rna10062|Name=rna10062|organism=Nannochloropsis gaditana|type=mRNA|length=2569bp|location=Sequence derived from alignment at KK037261.1:31880..34448+ (Nannochloropsis gaditana)
agacgAGCATTGTGAAATGAACGACGCACCATTCCTGGGATCTACCCCTG
GTTGTCCACACGAAACGCAGGCAGGACCGCTGAAGGAGCGCTAGTGCTGA
TGGGTGGCATTGTCGCAAGGGAAGTAGACGCGACTCCTACCAGGgttgcc
tctttctcatATCGCTTACATAATGCGTCCACATGCTGCCAACATTTTCT
TCCATCATTTTCACCAGTCCTTTTCGATTTTTTACCCCCGCTATGCATAA
ATTCGTATAGCTTTGCGTAGTGTTATTCTGTGCACGGGTCTGGCATGGCA
CCGCCTGGCCGGAGAAGGCTAGtcatcctcctgcgcctTATAATGGGGGC
ATTAGTATCATTAGCCACCTGTCAAGCTTTTTTGGGGTTTTCATATTCTT
CGCAGCGCATTGCTACGCCAGGTTCTACTGCATTGCGGATGCATCAGCTA
CAGCCGTTATTGAACACGCCGCTGCGGTTTGGTTGCGGATCTAGACGGGT
GTTGCGGCTTTTtgcaggggagaagggaggcgaagaggacgccCTAATAG
GAGTAAGGGGGCAacggggggggtgggaagaagtTAGAGAACGAGCGTTG
GCAAGCagtggaaagagaggagatgTGCCTTGACTAGAGAAGAGAATGTA
TTTGATTGACTGATGAAAGAAAGGAACAAGGATGCAAGCTGCTTCAGATG
CGATGAGGCGGTGTCAGCGTCGAGAACGGCAAACCATATAAAAACCACAA
GGATCGTTCTGGAAAGAAATCGTCGATAATAACTGTCTCATGCCTCATTT
GTCGCTCCTTTTTATCTGGcccacccctccttgtcaTATCCTTCTTCGCA
GGACATTGCGACtttggaggagttggaggcaGCCATCCAGACGTCCGGAA
CGACCAAACCGCTCGTGCTTCGGTTCCACGCTTCCTGGTGCTCggtagga
aaagaggaaggagggaggatggggggagtGAAGACAGTAGGACCACAAAG
AAGGTTTGGGCCTAGGGCCTGTCCATATCTCAAGGGGGGGGTaagggcag
gaaaggaaagaggaaggcgaggagaggagagccATAGGCATTGATGGAAG
ATATATATTAGTGGCATGCTGTATTTTGTCGATGATATAGAATCAAGTGT
ACGGGTACGCGGtccccccgctcctctctctcctcccattctcaCCTCAT
TCTTGTACCCCtaattccttcctccctccctttctcccttaCTTTGTCCT
GGGATAGGCCTGCAAGCGCTTTGCCCCAACGTGGCAACAAACTGTAAACG
CTTACGAAGAATACTTCGACTTTGTCGATGTGGATGTGACGGtaacggag
gggagggagggagaggaagtgaaTAGTTGCTCTGTCTGGCGACAGGAACG
TCACAATAAGTCATGACAGGGACTCTATTGGTTCAGAAATATTCTCTCCT
TCATTCCTCGTTCCTCATCTACTccctgctctttcctccatgatggtagg
ggaagagggacatCATCATGGCTATGGGTCTCACAGTGCTTCCTCACTCT
CATTTCTACGTCGGAGGGAGCAAGGTGGAGGACTTCGGCGTCTCGATTAA
GAAACTAAATGTGCGTGACTTGTCATTTTTACCCGTGTCTTCGAcattcc
gtccctccttccctctctcacgtCCCTAATCCTtgcttcccatccctcct
gctGCTTTCATCTCTTGTTTGTTTTGTGACCTCTTTACCACCCATCCTTC
TCGTCATCCGTAATGTCGTTTGCCACCTCTCTTATTGCATCCGTCGTTTT
TAATTTTGGTCCGCCAGGGGCTTCTGGAACGGCTGGATAAGTATAAGAAA
ATGCAATGACGGAAGACGGGAAAATGTGACGAAGATATGGATTCAGAGAG
ACCAAATTGTGTAGATAATACACTTGAGGAAAGTTTAAGAGCTCAGGACT
GGGGCAGAGAGATAAaaaagggggtggggaaggaggcctcGGGGTGACTT
GTATGTCTGAACTGAAGGTCGACCTGTGGGAGAATTAGAGCGCGCAAGGA
TGTTTGAGAATCATCACAAAATGACATTTCAGTGGCTCGTTATCCAAGCG
ATTTTGGGGAATCTCAGGGAAGGATCCGTTTGGTGAAAGGATAAATTACC
TGTGGATCATGTAGCCCGATAAAAACTCAGAAAAACCAACGGTGCCCagt
ttctttccctctctcgaTCCCGCTATTTTCCATCCGTCATTCTCTGGAAA
GGACAGAGGACGGTTAGTTTCAGGGTTGATAAAAAGTCCTGatagagaag
gaggaggaggaggaagttgtTAACAGGACGAGAAACTGGCCATTCTTCCT
GCGTCGTTCGCTGTGCCTCCTATTCCCAAGTCCAACTGTTTGGATCATGT
AGAcgtcgcctcctctctgctCTTCCACACGGGTGTAATAGAGTGGGCAG
TTCATTTCCATACGGGTGGATCGGAGCGGAAGCTTCATTTGAGGAAATCG
AAAAGGAGCTATAGGAGGACGAGTCTAAAGGATAACATTAACAGGGTTTA
CGCTACTGTTAGACTTGGG

Coding sequence (CDS) from alignment at KK037261.1:31880..34448+

>rna10062 ID=rna10062|Name=rna10062|organism=Nannochloropsis gaditana|type=CDS|length=2940bp|location=Sequence derived from alignment at KK037261.1:31880..34448+ (Nannochloropsis gaditana)
ATGGCACCGCCTGGCCGGAGAAGGCTAGtcatcctcctgcgcctTATAAT
GGGGGCATTAGTATCATTAGCCACCTGTCAAGCTTTTTTGGGGTTTTCAT
ATTCTTCGCAGCGCATTGCTACGCCAGGTTCTACTGCATTGCGGATGCAT
CAGCTACAGCCGTTATTGAACACGCCGCTGCGGTTTGGTTGCGGATCTAG
ACGGGTGTTGCGGCTTTTtgcaggggagaagggaggcgaagaggacgccC
TAATAGGAGACATTGCGACtttggaggagttggaggcaGCCATCCAGACG
TCCGGAACGACCAAACCGCTCGTGCTTCGGTTCCACGCTTCCTGGTGCTC
gGCCTGCAAGCGCTTTGCCCCAACGTGGCAACAAACTGTAAACGCTTACG
AAGAATACTTCGACTTTGTCGATGTGGATGTGACGgggaagagggacatC
ATCATGGCTATGGGTCTCACAGTGCTTCCTCACTCTCATTTCTACGTCGG
AGGGAGCAAGGTGGAGGACTTCGGCGTCTCGATTAAGAAACTAAATGGGC
TTCTGGAACGGCTGGATAAGTATAAGAAAATGCAATGAATGGCACCGCCT
GGCCGGAGAAGGCTAGtcatcctcctgcgcctTATAATGGGGGCATTAGT
ATCATTAGCCACCTGTCAAGCTTTTTTGGGGTTTTCATATTCTTCGCAGC
GCATTGCTACGCCAGGTTCTACTGCATTGCGGATGCATCAGCTACAGCCG
TTATTGAACACGCCGCTGCGGTTTGGTTGCGGATCTAGACGGGTGTTGCG
GCTTTTtgcaggggagaagggaggcgaagaggacgccCTAATAGGAGACA
TTGCGACtttggaggagttggaggcaGCCATCCAGACGTCCGGAACGACC
AAACCGCTCGTGCTTCGGTTCCACGCTTCCTGGTGCTCgGCCTGCAAGCG
CTTTGCCCCAACGTGGCAACAAACTGTAAACGCTTACGAAGAATACTTCG
ACTTTGTCGATGTGGATGTGACGgggaagagggacatCATCATGGCTATG
GGTCTCACAGTGCTTCCTCACTCTCATTTCTACGTCGGAGGGAGCAAGGT
GGAGGACTTCGGCGTCTCGATTAAGAAACTAAATGGGCTTCTGGAACGGC
TGGATAAGTATAAGAAAATGCAATGAATGGCACCGCCTGGCCGGAGAAGG
CTAGtcatcctcctgcgcctTATAATGGGGGCATTAGTATCATTAGCCAC
CTGTCAAGCTTTTTTGGGGTTTTCATATTCTTCGCAGCGCATTGCTACGC
CAGGTTCTACTGCATTGCGGATGCATCAGCTACAGCCGTTATTGAACACG
CCGCTGCGGTTTGGTTGCGGATCTAGACGGGTGTTGCGGCTTTTtgcagg
ggagaagggaggcgaagaggacgccCTAATAGGAGACATTGCGACtttgg
aggagttggaggcaGCCATCCAGACGTCCGGAACGACCAAACCGCTCGTG
CTTCGGTTCCACGCTTCCTGGTGCTCgGCCTGCAAGCGCTTTGCCCCAAC
GTGGCAACAAACTGTAAACGCTTACGAAGAATACTTCGACTTTGTCGATG
TGGATGTGACGgggaagagggacatCATCATGGCTATGGGTCTCACAGTG
CTTCCTCACTCTCATTTCTACGTCGGAGGGAGCAAGGTGGAGGACTTCGG
CGTCTCGATTAAGAAACTAAATGGGCTTCTGGAACGGCTGGATAAGTATA
AGAAAATGCAATGAATGGCACCGCCTGGCCGGAGAAGGCTAGtcatcctc
ctgcgcctTATAATGGGGGCATTAGTATCATTAGCCACCTGTCAAGCTTT
TTTGGGGTTTTCATATTCTTCGCAGCGCATTGCTACGCCAGGTTCTACTG
CATTGCGGATGCATCAGCTACAGCCGTTATTGAACACGCCGCTGCGGTTT
GGTTGCGGATCTAGACGGGTGTTGCGGCTTTTtgcaggggagaagggagg
cgaagaggacgccCTAATAGGAGACATTGCGACtttggaggagttggagg
caGCCATCCAGACGTCCGGAACGACCAAACCGCTCGTGCTTCGGTTCCAC
GCTTCCTGGTGCTCgGCCTGCAAGCGCTTTGCCCCAACGTGGCAACAAAC
TGTAAACGCTTACGAAGAATACTTCGACTTTGTCGATGTGGATGTGACGg
ggaagagggacatCATCATGGCTATGGGTCTCACAGTGCTTCCTCACTCT
CATTTCTACGTCGGAGGGAGCAAGGTGGAGGACTTCGGCGTCTCGATTAA
GAAACTAAATGGGCTTCTGGAACGGCTGGATAAGTATAAGAAAATGCAAT
GAATGGCACCGCCTGGCCGGAGAAGGCTAGtcatcctcctgcgcctTATA
ATGGGGGCATTAGTATCATTAGCCACCTGTCAAGCTTTTTTGGGGTTTTC
ATATTCTTCGCAGCGCATTGCTACGCCAGGTTCTACTGCATTGCGGATGC
ATCAGCTACAGCCGTTATTGAACACGCCGCTGCGGTTTGGTTGCGGATCT
AGACGGGTGTTGCGGCTTTTtgcaggggagaagggaggcgaagaggacgc
cCTAATAGGAGACATTGCGACtttggaggagttggaggcaGCCATCCAGA
CGTCCGGAACGACCAAACCGCTCGTGCTTCGGTTCCACGCTTCCTGGTGC
TCgGCCTGCAAGCGCTTTGCCCCAACGTGGCAACAAACTGTAAACGCTTA
CGAAGAATACTTCGACTTTGTCGATGTGGATGTGACGgggaagagggaca
tCATCATGGCTATGGGTCTCACAGTGCTTCCTCACTCTCATTTCTACGTC
GGAGGGAGCAAGGTGGAGGACTTCGGCGTCTCGATTAAGAAACTAAATGG
GCTTCTGGAACGGCTGGATAAGTATAAGAAAATGCAATGA

Synonyms

Publications