rna10009, rna10009 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10009
Unique Name	rna10009
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	518
Alignment location	KK037259.1:115461..116937 -

Link to JBrowse

Properties


Property Name	Value
Product	protein disulfide-isomerase a3
Orig transcript id	gnl\|cribi\|Naga_100674g4.10420.mrna
Orig protein id	gnl\|cribi\|Naga_100674g4.10420
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037259.1	supercontig	KK037259.1:115461..116937 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100674g4	gene9711	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10009	rna10009-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20695.1	cds9978	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037259.1:115461..116937-
coding sequence from alignment at KK037259.1:115461..116937-

mRNA sequence

>rna10009 ID=rna10009|Name=rna10009|organism=Nannochloropsis gaditana|type=mRNA|length=518bp
TACCGTTGCATATGCCTCTTCATAGAGCTTGAGACATGCTCTGCGCCTCG
CATGCATCTAGTGTCGCTGTCATGTCACATTCTTCGCTGACGCATTCCCG
TCTTCCCTTCGACAGGATCGGTTTCCGGTTTTGTCATGATCGGGCCCCAA
GTTACCCTCTCCCTTCTTGCTGTCCTCTCCCTTCTTTGTTCCACACACGC
ATTCGTACCCCTACACCCCGCCCCGGGCAAGCATGCATGGAACGAGCACC
TTTCAAAGCATCTGCCAGTAGCTGCTGCAGGCAAAGATCGACCTGGCGCA
CGAAGTCTTCCGTACAAGCTGGTCAGGCATGCGACGGGTGCAGGGGACGC
AGAGCTCACAGACAAGGAGATCCTGGCGCAAGCCGAACCGCACATAGCTC
GCCTTCGTGGGGCCACCGTGGTGGTTAAATACGGAGGCCATGCCATGGAA
AACGATGACTTGAAGGCAAAGTTTGCAAGTGACATTGCGCTGCTCAAGCA
AGTAGGTGCTCCCCCCTC

protein sequence of rna10009

>rna10009-protein ID=rna10009-protein|Name=rna10009|organism=Nannochloropsis gaditana|type=polypeptide|length=245bp
MNRPKPGGVSPVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSF
ELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKP
WDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGSFGSELKIATL
EQMGALAIDEEVVRARLEAQERRVLRNHLRRRYSHPLLDKIAGEVVFDGH
RWHTWLGGLSLLINLAFFLSWYAVSSTAAAKKKRGKKLAHGQKAD

mRNA from alignment at KK037259.1:115461..116937-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10009 ID=rna10009|Name=rna10009|organism=Nannochloropsis gaditana|type=mRNA|length=1477bp|location=Sequence derived from alignment at KK037259.1:115461..116937- (Nannochloropsis gaditana)
ATGAATCGTCCCGTACGGCACGGGACGAGAAAGTGAGGGCTCGGAGCAAA
GGAGCGGACAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAGGAAAATGTTGGCTTTTATCAAACCTTCGACGCGATTTTAGCCATCTT
GTCCCCTCCCTTCCTCCCTCCCTCACCATATCCTTGCCCTCCCCTTCACA
TACAGAAGCCGGGCGGGGTCTCGCCCGTGCGAAAATTCGTGGGCAAGAAT
TTCCTGAAGCGGGTGGCGGAGGAAGGGAAGGATGTTCTGGTGCTGGTCAC
CCGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGACGGACGGACGGACGGGTTGGTGGTACGGAGGGTGTCGCGTGG
GCAGGAAGGCCAGGAAGAAAAACACCCATCGCCCACCCCTCTCTCCCTCC
CTCCCTTCCTTCCTCCCCCCCTCAGTCCCCTCTGTCCCTCCTGCCTGGAC
CTGGCTCTCTCCTTCGAGCTCCTCGGGAAGGCCCTGCAGGCGGACACGCG
CGTGGTGCTGGGAAAGATCGACGCCCTTCTGAACGACCTCCCTCCCTCCG
TCCTCTCCCCCTCCCTCTCCCCAGCCCTCCCTCTCCTCCTCCTCTTCCCC
GCCAAGAACAAGCCCTGGGACGAGGGCGGGGGGGAGGGAGGGAGGGAGGG
AGGGGGGCTGCCGGCTTTCGTCACCCTGCCTGACCCCTCCCCCGCCCTCC
ACGACTTGGCGGAATTTCTCTCCCGGGAAGGATCTTTTGGGAGCGAGTTG
AAGGTGAGACAGGGAGGGAGGGAGGAAGGGCGGGGGGGAGGGCGGGGGGG
GATGCACGGGGAGGAAGGTCAGTGGGATCGAGGGCGGGGGTCCAGAGACT
TAGGACCAATCGCAGGGGGAGATTCGACGCGATCGACAAGAATCTTGAAG
ATTCGTGCCCCTGCTTCCTCTCTAAATTCTTCGCAACGGCCCCTTCGTGG
GGAATGTGTGTCCATCGAACAGATCGCGACGCTAGAGCAGATGGGCGCCT
TGGCCATCGACGAGGAAGTCGTCAGGTAACCCGCCCCTTCCCGCTTATCC
TGTCAATGTACTTTCTTTTTCAGGGTCCTGGACTTCTTTATTCTCCTTCT
TTTGTATCCCTAGGGCCATGTGCTCGTTTTTTCGTACCTCTTATCCTCTT
TCTCCCTCCCTCCTTGTTGTCTTTTTTCAGGGCACGTCTCGAAGCTCAGG
AACGCAGGGTGTTGCGCAACCATTTGCGGCGACGATATTCGCACCCTCTT
CTCGACAAGATCGCCGGCGAAGTCGTCTTTGACGGGCATCGATGGCACAC
GTGGCTGGGAGGGTTGTCCCTCCTCATCAACCTTGCCTTTTTTTTGTCCT
GGTATGCGGTCTCGAGTACGGCCGCCGCGAAGAAGAAAAGGGGGAAAAAG
TTAGCACATGGGCAAAAGGCAGACTAG

Coding sequence (CDS) from alignment at KK037259.1:115461..116937-

>rna10009 ID=rna10009|Name=rna10009|organism=Nannochloropsis gaditana|type=CDS|length=3690bp|location=Sequence derived from alignment at KK037259.1:115461..116937- (Nannochloropsis gaditana)
GGCACGTCTCGAAGCTCAGGAACGCAGGGTGTTGCGCAACCATTTGCGGC
GACGATATTCGCACCCTCTTCTCGACAAGATCGCCGGCGAAGTCGTCTTT
GACGGGCATCGATGGCACACGTGGCTGGGAGGGTTGTCCCTCCTCATCAA
CCTTGCCTTTTTTTTGTCCTGGTATGCGGTCTCGAGTACGGCCGCCGCGA
AGAAGAAAAGGGGGAAAAAGTTAGCACATGGGCAAAAGGCAGACTAGATC
GCGACGCTAGAGCAGATGGGCGCCTTGGCCATCGACGAGGAAGTCGTCAG
TCCCCTCTGTCCCTCCTGCCTGGACCTGGCTCTCTCCTTCGAGCTCCTCG
GGAAGGCCCTGCAGGCGGACACGCGCGTGGTGCTGGGAAAGATCGACGCC
CTTCTGAACGACCTCCCTCCCTCCGTCCTCTCCCCCTCCCTCTCCCCAGC
CCTCCCTCTCCTCCTCCTCTTCCCCGCCAAGAACAAGCCCTGGGACGAGG
GCGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGCTGCCGGCTTTCGTCACC
CTGCCTGACCCCTCCCCCGCCCTCCACGACTTGGCGGAATTTCTCTCCCG
GGAAGGATCTTTTGGGAGCGAGTTGAAGAAGCCGGGCGGGGTCTCGCCCG
TGCGAAAATTCGTGGGCAAGAATTTCCTGAAGCGGGTGGCGGAGGAAGGG
AAGGATGTTCTGGTGCTGGTCACCCGATGAATCGTCCCGGCACGTCTCGA
AGCTCAGGAACGCAGGGTGTTGCGCAACCATTTGCGGCGACGATATTCGC
ACCCTCTTCTCGACAAGATCGCCGGCGAAGTCGTCTTTGACGGGCATCGA
TGGCACACGTGGCTGGGAGGGTTGTCCCTCCTCATCAACCTTGCCTTTTT
TTTGTCCTGGTATGCGGTCTCGAGTACGGCCGCCGCGAAGAAGAAAAGGG
GGAAAAAGTTAGCACATGGGCAAAAGGCAGACTAGATCGCGACGCTAGAG
CAGATGGGCGCCTTGGCCATCGACGAGGAAGTCGTCAGTCCCCTCTGTCC
CTCCTGCCTGGACCTGGCTCTCTCCTTCGAGCTCCTCGGGAAGGCCCTGC
AGGCGGACACGCGCGTGGTGCTGGGAAAGATCGACGCCCTTCTGAACGAC
CTCCCTCCCTCCGTCCTCTCCCCCTCCCTCTCCCCAGCCCTCCCTCTCCT
CCTCCTCTTCCCCGCCAAGAACAAGCCCTGGGACGAGGGCGGGGGGGAGG
GAGGGAGGGAGGGAGGGGGGCTGCCGGCTTTCGTCACCCTGCCTGACCCC
TCCCCCGCCCTCCACGACTTGGCGGAATTTCTCTCCCGGGAAGGATCTTT
TGGGAGCGAGTTGAAGAAGCCGGGCGGGGTCTCGCCCGTGCGAAAATTCG
TGGGCAAGAATTTCCTGAAGCGGGTGGCGGAGGAAGGGAAGGATGTTCTG
GTGCTGGTCACCCGATGAATCGTCCCGGCACGTCTCGAAGCTCAGGAACG
CAGGGTGTTGCGCAACCATTTGCGGCGACGATATTCGCACCCTCTTCTCG
ACAAGATCGCCGGCGAAGTCGTCTTTGACGGGCATCGATGGCACACGTGG
CTGGGAGGGTTGTCCCTCCTCATCAACCTTGCCTTTTTTTTGTCCTGGTA
TGCGGTCTCGAGTACGGCCGCCGCGAAGAAGAAAAGGGGGAAAAAGTTAG
CACATGGGCAAAAGGCAGACTAGATCGCGACGCTAGAGCAGATGGGCGCC
TTGGCCATCGACGAGGAAGTCGTCAGTCCCCTCTGTCCCTCCTGCCTGGA
CCTGGCTCTCTCCTTCGAGCTCCTCGGGAAGGCCCTGCAGGCGGACACGC
GCGTGGTGCTGGGAAAGATCGACGCCCTTCTGAACGACCTCCCTCCCTCC
GTCCTCTCCCCCTCCCTCTCCCCAGCCCTCCCTCTCCTCCTCCTCTTCCC
CGCCAAGAACAAGCCCTGGGACGAGGGCGGGGGGGAGGGAGGGAGGGAGG
GAGGGGGGCTGCCGGCTTTCGTCACCCTGCCTGACCCCTCCCCCGCCCTC
CACGACTTGGCGGAATTTCTCTCCCGGGAAGGATCTTTTGGGAGCGAGTT
GAAGAAGCCGGGCGGGGTCTCGCCCGTGCGAAAATTCGTGGGCAAGAATT
TCCTGAAGCGGGTGGCGGAGGAAGGGAAGGATGTTCTGGTGCTGGTCACC
CGATGAATCGTCCCGGCACGTCTCGAAGCTCAGGAACGCAGGGTGTTGCG
CAACCATTTGCGGCGACGATATTCGCACCCTCTTCTCGACAAGATCGCCG
GCGAAGTCGTCTTTGACGGGCATCGATGGCACACGTGGCTGGGAGGGTTG
TCCCTCCTCATCAACCTTGCCTTTTTTTTGTCCTGGTATGCGGTCTCGAG
TACGGCCGCCGCGAAGAAGAAAAGGGGGAAAAAGTTAGCACATGGGCAAA
AGGCAGACTAGATCGCGACGCTAGAGCAGATGGGCGCCTTGGCCATCGAC
GAGGAAGTCGTCAGTCCCCTCTGTCCCTCCTGCCTGGACCTGGCTCTCTC
CTTCGAGCTCCTCGGGAAGGCCCTGCAGGCGGACACGCGCGTGGTGCTGG
GAAAGATCGACGCCCTTCTGAACGACCTCCCTCCCTCCGTCCTCTCCCCC
TCCCTCTCCCCAGCCCTCCCTCTCCTCCTCCTCTTCCCCGCCAAGAACAA
GCCCTGGGACGAGGGCGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGCTGC
CGGCTTTCGTCACCCTGCCTGACCCCTCCCCCGCCCTCCACGACTTGGCG
GAATTTCTCTCCCGGGAAGGATCTTTTGGGAGCGAGTTGAAGAAGCCGGG
CGGGGTCTCGCCCGTGCGAAAATTCGTGGGCAAGAATTTCCTGAAGCGGG
TGGCGGAGGAAGGGAAGGATGTTCTGGTGCTGGTCACCCGATGAATCGTC
CCGGCACGTCTCGAAGCTCAGGAACGCAGGGTGTTGCGCAACCATTTGCG
GCGACGATATTCGCACCCTCTTCTCGACAAGATCGCCGGCGAAGTCGTCT
TTGACGGGCATCGATGGCACACGTGGCTGGGAGGGTTGTCCCTCCTCATC
AACCTTGCCTTTTTTTTGTCCTGGTATGCGGTCTCGAGTACGGCCGCCGC
GAAGAAGAAAAGGGGGAAAAAGTTAGCACATGGGCAAAAGGCAGACTAGA
TCGCGACGCTAGAGCAGATGGGCGCCTTGGCCATCGACGAGGAAGTCGTC
AGTCCCCTCTGTCCCTCCTGCCTGGACCTGGCTCTCTCCTTCGAGCTCCT
CGGGAAGGCCCTGCAGGCGGACACGCGCGTGGTGCTGGGAAAGATCGACG
CCCTTCTGAACGACCTCCCTCCCTCCGTCCTCTCCCCCTCCCTCTCCCCA
GCCCTCCCTCTCCTCCTCCTCTTCCCCGCCAAGAACAAGCCCTGGGACGA
GGGCGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGCTGCCGGCTTTCGTCA
CCCTGCCTGACCCCTCCCCCGCCCTCCACGACTTGGCGGAATTTCTCTCC
CGGGAAGGATCTTTTGGGAGCGAGTTGAAGAAGCCGGGCGGGGTCTCGCC
CGTGCGAAAATTCGTGGGCAAGAATTTCCTGAAGCGGGTGGCGGAGGAAG
GGAAGGATGTTCTGGTGCTGGTCACCCGATGAATCGTCCC

Synonyms

Publications