EWM20695.1, cds9978 (CDS) Nannochloropsis gaditana

Overview
NameEWM20695.1
Unique Namecds9978
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:116926..116937 -
Alignment locationKK037259.1:116635..116732 -
Alignment locationKK037259.1:116135..116462 -
Alignment locationKK037259.1:115863..115915 -
Alignment locationKK037259.1:115461..115707 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20695.1
Productprotein disulfide-isomerase a3
Orig transcript idgnl|cribi|Naga_100674g4.10420.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:116926..116937 -
KK037259.1supercontigKK037259.1:116635..116732 -
KK037259.1supercontigKK037259.1:116135..116462 -
KK037259.1supercontigKK037259.1:115863..115915 -
KK037259.1supercontigKK037259.1:115461..115707 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|585100518|gb|EWM20695.1| (protein disulfide-isomerase a3 [Nannochloropsis gaditana])

HSP 1 Score: 488.034 bits (1255), Expect = 3.166e-174
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query:    1 MNRPKPGGVSPVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGSFGSELKIATLEQMGALAIDEEVVRARLEAQERRVLRNHLRRRYSHPLLDKIAGEVVFDGHRWHTWLGGLSLLINLAFFLSWYAVSSTAAAKKKRGKKLAHGQKAD 245
            MNRPKPGGVSPVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGSFGSELKIATLEQMGALAIDEEVVRARLEAQERRVLRNHLRRRYSHPLLDKIAGEVVFDGHRWHTWLGGLSLLINLAFFLSWYAVSSTAAAKKKRGKKLAHGQKAD
Sbjct:    1 MNRPKPGGVSPVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGSFGSELKIATLEQMGALAIDEEVVRARLEAQERRVLRNHLRRRYSHPLLDKIAGEVVFDGHRWHTWLGGLSLLINLAFFLSWYAVSSTAAAKKKRGKKLAHGQKAD 245          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|159164226|pdb|2DMM|A (Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3)

HSP 1 Score: 66.2402 bits (160), Expect = 4.390e-10
Identity = 44/132 (33.33%), Postives = 60/132 (45.45%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGSFG 142
            PV+  V +NF + V  E KDVL+    P C  C +L   ++ LG+ L  D  +V+ K+DA  ND+P    SP      P +   PA NK  +    EGGRE                L D   +L RE + G
Sbjct:   28 PVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP----SPYEVRGFPTIYFSPA-NKKLNPKKYEGGRE----------------LSDFISYLQREATSG 138          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|291240569|ref|XP_002740183.1| (PREDICTED: protein disulfide-isomerase A3-like [Saccoglossus kowalevskii])

HSP 1 Score: 69.3218 bits (168), Expect = 5.463e-10
Identity = 45/132 (34.09%), Postives = 59/132 (44.70%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGSFG 142
            PV+  V KNF   V  E KDVL+    P C  C  LA  ++ L + L AD  +V+ K+DA  ND+PP    P      P L   P  NKP      EGGRE                + D  +++ RE + G
Sbjct:  363 PVKVIVAKNFQDIVMSEEKDVLIEFYAPWCGHCKSLAPKYDELAEKLSADDNIVIAKMDATANDVPP----PFEVRGFPTLYWVPMNNKP---KKYEGGRE----------------VDDFMKYIKREATKG 471          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|340372669|ref|XP_003384866.1| (PREDICTED: protein disulfide-isomerase A3-like [Amphimedon queenslandica])

HSP 1 Score: 67.781 bits (164), Expect = 1.776e-9
Identity = 41/109 (37.61%), Postives = 53/109 (48.62%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFV 119
            PV   VGKNF + V ++ KDVL+    P C  C  LA  ++ LG  L+ DT +V+ K DA  ND PP           P +   PA NK  +    EGGRE      F+
Sbjct:  365 PVTVVVGKNFDEIVNDDSKDVLIEFYAPWCGHCKALAPKYDELGDKLKGDTNIVIAKTDATANDYPPQF----QVQGYPTIFWVPAGNKS-NPQRYEGGREVSDFLKFI 468          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|507674317|ref|XP_004709449.1| (PREDICTED: protein disulfide-isomerase A3 isoform X2 [Echinops telfairi])

HSP 1 Score: 67.781 bits (164), Expect = 1.910e-9
Identity = 43/130 (33.08%), Postives = 61/130 (46.92%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGS 140
            PV+  V +NF + V  EGKDVL+    P C  C +L   ++ LG+ L  D  +++ K+DA  ND+P    SP      P +   PA NK  +    EGGRE                L+D   +L RE +
Sbjct:  352 PVKVVVAENFDEIVNNEGKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIIIAKMDATANDVP----SPYEVRGFPTIYFSPA-NKKLNPKKYEGGRE----------------LNDFISYLQREAT 460          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|146331816|gb|ABQ22414.1| (disulfide-isomerase A3 precursor-like protein, partial [Callithrix jacchus])

HSP 1 Score: 64.3142 bits (155), Expect = 1.955e-9
Identity = 43/130 (33.08%), Postives = 59/130 (45.38%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGS 140
            PV+  V +NF + V  E KDVL+    P C  C +L   ++ LG+ L  D  +V+ K+DA  ND+P    SP      P +   PA NK  +    EGGRE                L D   +L RE +
Sbjct:    7 PVKVVVAENFDEIVNNEDKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP----SPYEVRGFPTIYFSPA-NKKLNPKKYEGGRE----------------LSDFISYLQREAT 115          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|507674314|ref|XP_004709448.1| (PREDICTED: protein disulfide-isomerase A3 isoform X1 [Echinops telfairi])

HSP 1 Score: 67.3958 bits (163), Expect = 2.363e-9
Identity = 43/130 (33.08%), Postives = 61/130 (46.92%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGS 140
            PV+  V +NF + V  EGKDVL+    P C  C +L   ++ LG+ L  D  +++ K+DA  ND+P    SP      P +   PA NK  +    EGGRE                L+D   +L RE +
Sbjct:  377 PVKVVVAENFDEIVNNEGKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIIIAKMDATANDVP----SPYEVRGFPTIYFSPA-NKKLNPKKYEGGRE----------------LNDFISYLQREAT 485          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|946694728|ref|XP_006136743.2| (PREDICTED: protein disulfide-isomerase A3 [Pelodiscus sinensis])

HSP 1 Score: 67.3958 bits (163), Expect = 2.445e-9
Identity = 41/116 (35.34%), Postives = 57/116 (49.14%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSP 126
            PV+  V +NF   V  EGKDVL+    P C  C +L   ++ LG+ L  D  +V+ K+DA  ND+P    SP      P +   PA NK  +    EGGRE     +++     SP
Sbjct:  354 PVKVVVAENFEDVVNAEGKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP----SPYEVRGFPTIYFAPAGNK-QNPKKYEGGREVSDFVSYLKREATSP 464          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|585150096|ref|XP_006727530.1| (PREDICTED: protein disulfide-isomerase A3-like [Leptonychotes weddellii])

HSP 1 Score: 66.6254 bits (161), Expect = 2.635e-9
Identity = 42/130 (32.31%), Postives = 61/130 (46.92%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGS 140
            PV+  V +NF + V +E KDVL+    P C  C +L   ++ LG+ L+ D  +++ K+DA  ND+P    SP      P +   PA NK  +    EGGRE                L D   +L RE +
Sbjct:  166 PVKVVVAENFDEIVNDENKDVLIEFYAPWCGHCKNLEPKYKELGEKLRKDPNIIIAKMDATANDVP----SPYEVRGFPTIYFSPA-NKKLNPKKYEGGRE----------------LSDFISYLQREAT 274          
BLAST of EWM20695.1 vs. NCBI_GenBank
Match: gi|586447181|ref|XP_006831776.1| (PREDICTED: protein disulfide-isomerase A3 isoform X2 [Chrysochloris asiatica])

HSP 1 Score: 67.0106 bits (162), Expect = 3.645e-9
Identity = 43/130 (33.08%), Postives = 60/130 (46.15%), Query Frame = 0
Query:   11 PVRKFVGKNFLKRVAEEGKDVLVLVTRPLCPSCLDLALSFELLGKALQADTRVVLGKIDALLNDLPPSVLSPSLSPALPLLLLFPAKNKPWDEGGGEGGREGGGLPAFVTLPDPSPALHDLAEFLSREGS 140
            PV+  V +NF + V  E KDVL+    P C  C +L   ++ LG+ L  D  +V+ K+DA  ND+P    SP      P +   PA NK  +    EGGRE                L+D   +L RE +
Sbjct:  352 PVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP----SPYEVKGFPTIYFSPA-NKKLNPKKYEGGRE----------------LNDFISYLQREAT 460          
The following BLAST results are available for this feature:
BLAST of EWM20695.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100518|gb|EWM20695.1|3.166e-174100.00protein disulfide-isomerase a3 [Nannochloropsis ga... [more]
gi|159164226|pdb|2DMM|A4.390e-1033.33Chain A, The Solution Structure Of The Second Thio... [more]
gi|291240569|ref|XP_002740183.1|5.463e-1034.09PREDICTED: protein disulfide-isomerase A3-like [Sa... [more]
gi|340372669|ref|XP_003384866.1|1.776e-937.61PREDICTED: protein disulfide-isomerase A3-like [Am... [more]
gi|507674317|ref|XP_004709449.1|1.910e-933.08PREDICTED: protein disulfide-isomerase A3 isoform ... [more]
gi|146331816|gb|ABQ22414.1|1.955e-933.08disulfide-isomerase A3 precursor-like protein, par... [more]
gi|507674314|ref|XP_004709448.1|2.363e-933.08PREDICTED: protein disulfide-isomerase A3 isoform ... [more]
gi|946694728|ref|XP_006136743.2|2.445e-935.34PREDICTED: protein disulfide-isomerase A3 [Pelodis... [more]
gi|585150096|ref|XP_006727530.1|2.635e-932.31PREDICTED: protein disulfide-isomerase A3-like [Le... [more]
gi|586447181|ref|XP_006831776.1|3.645e-933.08PREDICTED: protein disulfide-isomerase A3 isoform ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10009rna10009Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications