EWM20698.1, cds9976 (CDS) Nannochloropsis gaditana

Overview
NameEWM20698.1
Unique Namecds9976
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:111524..111604 +
Alignment locationKK037259.1:111930..112015 +
Alignment locationKK037259.1:112238..112463 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20698.1
Productwd repeat-containing protein
Orig transcript idgnl|cribi|Naga_101353g1.4775.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:111524..111604 +
KK037259.1supercontigKK037259.1:111930..112015 +
KK037259.1supercontigKK037259.1:112238..112463 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|585100525|gb|EWM20698.1| (wd repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 263.848 bits (673), Expect = 2.830e-89
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 
Query:    1 MASAWEMKGRLEKATHGDISSGGHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDARHKVEEGGREGEREGGRGMEQE 130
            MASAWEMKGRLEKATHGDISSGGHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDARHKVEEGGREGEREGGRGMEQE
Sbjct:    1 MASAWEMKGRLEKATHGDISSGGHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDARHKVEEGGREGEREGGRGMEQE 130
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|635372035|emb|CCI39643.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 66.2402 bits (160), Expect = 3.476e-11
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:   23 GHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            GH RKV  L +N  GS LA+G++D ++R+   +S               ++FRGH   + +L W+PTS  +  S   D+TVR+WD +
Sbjct:   22 GHSRKVYALEYNADGSMLASGSSDKTVRVWTNLS-----------EKGVIEFRGHTDPILSLAWDPTSLYRVSSTSSDKTVRVWDVK 97
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|953497886|emb|CEG40646.1| (WD40 repeat protein [Plasmopara halstedii])

HSP 1 Score: 66.6254 bits (161), Expect = 2.040e-10
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 0 
Query:   23 GHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            GH RKV  L FN +GS LA+G+ D SIRI              ++    +D RGH   + +L W+PT   +  S G D+TVR WD +
Sbjct:   21 GHSRKVYALEFNCNGSMLASGSNDRSIRIWD-----------PAAERELIDLRGHSDSIMSLAWDPTMPHRLASTGADKTVRFWDVK 96
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|695387938|ref|XP_009519043.1| (hypothetical protein PHYSODRAFT_324947 [Phytophthora sojae] >gi|348683940|gb|EGZ23755.1| hypothetical protein PHYSODRAFT_324947 [Phytophthora sojae])

HSP 1 Score: 66.2402 bits (160), Expect = 2.598e-10
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:   23 GHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            GH RKV  L FN  G+ LA+G+ D SIRI   V+  +             D RGH   + +L W+PT+  +  S G D+TVR WDA+
Sbjct:   24 GHSRKVYALAFNCDGTMLASGSLDRSIRIWDPVTERE-----------LTDLRGHSDSILSLAWDPTTPHRLASTGSDKTVRFWDAK 99
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|1214713879|gb|OWZ24757.1| (hypothetical protein PHMEG_000111 [Phytophthora megakarya])

HSP 1 Score: 65.0846 bits (157), Expect = 6.295e-10
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:   23 GHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            GH RKV  L FN  GS LA+G+ D SIRI   V+T +             + RGH   + +L W+PT+  +  S G D+TVR WDA+
Sbjct:   24 GHSRKVYALGFNCDGSMLASGSNDRSIRIWDPVTTRE-----------LGELRGHSDSVLSLAWDPTTPHRLASTGSDKTVRFWDAK 99
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|635372036|emb|CCI39644.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 64.6994 bits (156), Expect = 1.029e-9
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:   23 GHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            GH RKV  L +N  GS LA+G++D ++R+   +S               ++FRGH   + +L W+PTS  +  S   D+TVR+WD +
Sbjct:   22 GHSRKVYALEYNADGSMLASGSSDKTVRVWTNLS-----------EKGVIEFRGHTDPILSLAWDPTSLYRVSSTSSDKTVRVWDVK 97
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|325187905|emb|CCA22449.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 64.3142 bits (155), Expect = 1.197e-9
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:   23 GHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            GH RKV  L +N  GS LA+G++D S+R+    S               ++FRGH   + +L W+PTS  +  S   D+TVR+WD +
Sbjct:   20 GHSRKVYALEYNADGSMLASGSSDKSVRVWTNFS-----------EKGVIEFRGHTDPILSLAWDPTSLHRVSSTSSDKTVRVWDVK 95
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|301114723|ref|XP_002999131.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111225|gb|EEY69277.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 64.3142 bits (155), Expect = 1.350e-9
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:   23 GHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            GH RKV  L FN  GS LA+G+ D SIRI     T + L+ L          RGH   + +L W+PT+  +  S G D+TVR WD R
Sbjct:   24 GHSRKVYALGFNCDGSMLASGSNDRSIRIWDPF-TERELMEL----------RGHSDSILSLAWDPTTPNRLASTGSDKTVRFWDTR 99
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|678342775|emb|CDW72783.1| (tho complex subunit 3 [Stylonychia lemnae])

HSP 1 Score: 62.7734 bits (151), Expect = 6.203e-9
Identity = 28/86 (32.56%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:   24 HRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            +++++ CL++N SGS LA G+ D +I++ +      GL         T +++GH   + +L W+PT+E+ F +   D+T+R+WDA+
Sbjct:   32 NKKRICCLQWNKSGSKLAIGSYDTTIKMFSL--DGYGL-------TKTQEYKGHSDQVESLAWHPTNESVFVTTSMDKTIRIWDAK 108
[Close]
BLAST of EWM20698.1 vs. NCBI_GenBank
Match: gi|675166421|ref|XP_008892095.1| (hypothetical protein PPTG_02648 [Phytophthora parasitica INRA-310] >gi|566026859|gb|ETI49770.1| hypothetical protein F443_06546 [Phytophthora parasitica P1569] >gi|567964043|gb|ETK89534.1| hypothetical protein L915_06415 [Phytophthora parasitica] >gi|567992745|gb|ETL42935.1| hypothetical protein L916_06361 [Phytophthora parasitica] >gi|568022031|gb|ETL96111.1| hypothetical protein L917_06229 [Phytophthora parasitica] >gi|568052389|gb|ETM49265.1| hypothetical protein L914_06342 [Phytophthora parasitica] >gi|568108251|gb|ETN22875.1| hypothetical protein PPTG_02648 [Phytophthora parasitica INRA-310] >gi|570330445|gb|ETO78393.1| hypothetical protein F444_06612 [Phytophthora parasitica P1976] >gi|570954150|gb|ETP19407.1| hypothetical protein F441_06551 [Phytophthora parasitica CJ01A1] >gi|570989049|gb|ETP47326.1| hypothetical protein F442_06590 [Phytophthora parasitica P10297] >gi|970634963|gb|KUF79997.1| THO complex subunit 3 [Phytophthora nicotianae])

HSP 1 Score: 62.3882 bits (150), Expect = 6.699e-9
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:   23 GHRRKVSCLRFNHSGSHLATGATDGSIRIHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYDRTVRLWDAR 109
            GH RKV  L FN  GS LA+G+ D SIRI    +T + L+ L          RGH   + +L W+PT+  +  S G D+TVR WD +
Sbjct:   24 GHSRKVYALGFNCDGSMLASGSNDRSIRIWDP-TTERELMEL----------RGHSDSILSLAWDPTTPHRLASTGSDKTVRFWDTK 99
The following BLAST results are available for this feature:
BLAST of EWM20698.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100525|gb|EWM20698.1|2.830e-89100.00wd repeat-containing protein [Nannochloropsis gadi... [more]
gi|635372035|emb|CCI39643.1|3.476e-1135.63unnamed protein product [Albugo candida][more]
gi|953497886|emb|CEG40646.1|2.040e-1039.08WD40 repeat protein [Plasmopara halstedii][more]
gi|695387938|ref|XP_009519043.1|2.598e-1040.23hypothetical protein PHYSODRAFT_324947 [Phytophtho... [more]
gi|1214713879|gb|OWZ24757.1|6.295e-1041.38hypothetical protein PHMEG_000111 [Phytophthora me... [more]
gi|635372036|emb|CCI39644.1|1.029e-935.63unnamed protein product [Albugo candida][more]
gi|325187905|emb|CCA22449.1|1.197e-936.78conserved hypothetical protein [Albugo laibachii N... [more]
gi|301114723|ref|XP_002999131.1|1.350e-942.53conserved hypothetical protein [Phytophthora infes... [more]
gi|678342775|emb|CDW72783.1|6.203e-932.56tho complex subunit 3 [Stylonychia lemnae][more]
gi|675166421|ref|XP_008892095.1|6.699e-941.38hypothetical protein PPTG_02648 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10007rna10007Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications