rna10007, rna10007 (mRNA) Nannochloropsis gaditana

Overview
Namerna10007
Unique Namerna10007
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length309
Alignment locationKK037259.1:111449..112520 +

Link to JBrowse

Properties
Property NameValue
Productwd repeat-containing protein
Orig transcript idgnl|cribi|Naga_101353g1.4775.mrna
Orig protein idgnl|cribi|Naga_101353g1.4775
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:111449..112520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101353g1gene9709Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10007rna10007-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20698.1cds9976Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10007 ID=rna10007|Name=rna10007|organism=Nannochloropsis gaditana|type=mRNA|length=309bp
ATGCCAGGAACTCTAGCCGCGTCACGGCTACTGCCATGTCTTCGATTCTT
TTTCCCACTTCTTTCAATGGCGCTATGGAAACCCCTGACGGCCTTTGTTT
TCCCTCCAACTTCCTCCTTCCCATGCGGTTCTGCTCCCTTCACATCTCAA
CCTGCTCTCTGGGCCCAACCCATCCTTTCTTCCGCCGAGCGACTCACGAT
TAACGAACCTGTGCTCCGAGAAATTGCCCTTAAACTCGAAGCGGTGGGTC
TGGGCAAGACTCACCTAGTTCAAGACAAGAGCCTGGGGCCGGGTTTACAC
GTACGTTAA
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protein sequence of rna10007

>rna10007-protein ID=rna10007-protein|Name=rna10007|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MASAWEMKGRLEKATHGDISSGGHRRKVSCLRFNHSGSHLATGATDGSIR
IHATVSTPQGLLTLSSSSASTVDFRGHDKGLSALGWNPTSETQFGSCGYD
RTVRLWDARHKVEEGGREGEREGGRGMEQE
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mRNA from alignment at KK037259.1:111449..112520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10007 ID=rna10007|Name=rna10007|organism=Nannochloropsis gaditana|type=mRNA|length=1072bp|location=Sequence derived from alignment at KK037259.1:111449..112520+ (Nannochloropsis gaditana)
CGGACGTGCCTTTTTAGAGTCTGGTGTGTGACTTCTCGgttcccttctct
cttgcAGCGACCCCTCACTGACAAAATGGCATCAGCTTGGGAGATGAAAG
GAAGGTTAGAGAAGGCGACACACGGAGATATAAGCAGCGGAGGACACAGA
CGAAAGGTAGGTGCTTGGATCAGCAAAAAAGAGGGCGCGTGTAGAGAAGA
TAGGCGTGGGCAGAGACATTTTAATTGAGGGGTCGGGGGGCATGTCCTGT
GGGGGAGGTTAGGGTTGCATTTCCAGGAGCCACCAGTCCCGCAGAATCTC
GACCAGGACAAGATGCAACCAAGGACAGAAATTTAAAGGATAACGACGGG
AGGATGCAAAGAATCGTCGATAACCGATTCTCAATCTTGTCCGTGctgtt
tccctctctccctcccttccccccttcctcccccccctgcttccctcttt
ccctcttcccttcggTGTTTCTTCCCCAAAGGTTTCCTGCCTCAGATTTA
ATCATTCCGGGAGCCATTTAGCGACAGGTGCCACAGACGGTAGTATTAGA
ATACATGCTACGGTCAGGTAggtgggggaaaatggaaggaaCAAGATGAG
GAGGCATTCCACGATGCAGGAGAGGCAGTCTTCAGTCTTTGCGGAGGCAG
ATAAATAAAGCGTAGCATGCATCGCACGAAGGACTTGTTTTAGCCAGGTG
CGAGTAGGATGACGCAAAGGGTCACCTAGtttctacctccctccttccct
ccctccttccctccctccctcccttcctccctcccccagcacgccccaag
gcctcctgaccctctcctcctccagcgcctccacgGTCGACTTCCGCGGG
CACGACAAAGGTCTCTCGGCCCTGGGCTGGAACCCAACCAGCGAGACGCA
GTTTGGATCCTGCGGCTACGACCGCACCGTCCGCCTGTGGGACGCCCGGC
acaaggtggaggagggagggagggagggagagagggagggagggagggga
atggaaCAGGAATAAACGTCGACAAGAAGGTAGAGAGTCGCATTGACGGA
CCACCGTTTTCTGAACGgttct
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Coding sequence (CDS) from alignment at KK037259.1:111449..112520+

>rna10007 ID=rna10007|Name=rna10007|organism=Nannochloropsis gaditana|type=CDS|length=1179bp|location=Sequence derived from alignment at KK037259.1:111449..112520+ (Nannochloropsis gaditana)
ATGGCATCAGCTTGGGAGATGAAAGGAAGGTTAGAGAAGGCGACACACGG
AGATATAAGCAGCGGAGGACACAGACGAAAGGTTTCCTGCCTCAGATTTA
ATCATTCCGGGAGCCATTTAGCGACAGGTGCCACAGACGGTAGTATTAGA
ATACATGCTACGGTCAGcacgccccaaggcctcctgaccctctcctcctc
cagcgcctccacgGTCGACTTCCGCGGGCACGACAAAGGTCTCTCGGCCC
TGGGCTGGAACCCAACCAGCGAGACGCAGTTTGGATCCTGCGGCTACGAC
CGCACCGTCCGCCTGTGGGACGCCCGGCacaaggtggaggagggagggag
ggagggagagagggagggagggaggggaatggaaCAGGAATAAATGGCAT
CAGCTTGGGAGATGAAAGGAAGGTTAGAGAAGGCGACACACGGAGATATA
AGCAGCGGAGGACACAGACGAAAGGTTTCCTGCCTCAGATTTAATCATTC
CGGGAGCCATTTAGCGACAGGTGCCACAGACGGTAGTATTAGAATACATG
CTACGGTCAGcacgccccaaggcctcctgaccctctcctcctccagcgcc
tccacgGTCGACTTCCGCGGGCACGACAAAGGTCTCTCGGCCCTGGGCTG
GAACCCAACCAGCGAGACGCAGTTTGGATCCTGCGGCTACGACCGCACCG
TCCGCCTGTGGGACGCCCGGCacaaggtggaggagggagggagggaggga
gagagggagggagggaggggaatggaaCAGGAATAAATGGCATCAGCTTG
GGAGATGAAAGGAAGGTTAGAGAAGGCGACACACGGAGATATAAGCAGCG
GAGGACACAGACGAAAGGTTTCCTGCCTCAGATTTAATCATTCCGGGAGC
CATTTAGCGACAGGTGCCACAGACGGTAGTATTAGAATACATGCTACGGT
CAGcacgccccaaggcctcctgaccctctcctcctccagcgcctccacgG
TCGACTTCCGCGGGCACGACAAAGGTCTCTCGGCCCTGGGCTGGAACCCA
ACCAGCGAGACGCAGTTTGGATCCTGCGGCTACGACCGCACCGTCCGCCT
GTGGGACGCCCGGCacaaggtggaggagggagggagggagggagagaggg
agggagggaggggaatggaaCAGGAATAA
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Synonyms
Publications