rna9996, rna9996 (mRNA) Nannochloropsis gaditana

Overview
Namerna9996
Unique Namerna9996
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length657
Alignment locationKK037259.1:86100..87186 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100551g2.4020.mrna
Orig protein idgnl|cribi|Naga_100551g2.4020
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:86100..87186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100551g2gene9698Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9996rna9996-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20708.1cds9965Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9996 ID=rna9996|Name=rna9996|organism=Nannochloropsis gaditana|type=mRNA|length=657bp
ATGCCGCCGATCGCCGTGGCGTGCAGTAGTAAAAATCACCTGCAAACTGC
AACTTCCATTTCCCCGCTTCAAGTTCCCGTGAGAAAGATGGAAGACGTGC
ATGGACGAAGCGGCTTGGCCTTTCCCATGACCCTCGTTGTAATGCAAGGG
CTCATTCTTGTCATCTGGACCATGTACGGCTCCTACGCCCCCGATGCCGA
AGGTACTGCGCCCTCCCCGTCCTCCTCCTCCTACACTGCTACTACCCTCT
ATCAGTCCTGGCTCGGTGTGCACATCATGATGCTTTTCGGCTTTGGAAAC
CTCATGACCTTTATGCATCGACATGGCTACTCAGCCAGCGGGTATACCTT
CCTCGTCACCTGCCTCGGGCTTCAATGGTGCGTCATCATGTACGCTTTCT
GGCACGGCTTGATCGGCGAGGGGAAGCTTCGCGGTCCTACCTTGGACATG
ACCATGCTCTTCCAGGGGGACTTTGGGGTGGCCGCCGTCTTGATCTCCTT
CGGCGCCCTCATTGGCAAGATCTCTCCCACCCAGCTCATGGTTCTTTGTT
TCCTGGAGATCATCGTCTACGCGGCCTCGGAAGCCTTCGTGAGCGAGGTC
CTGCGGGCGGAGGACGTGGGGGGGTCCATGGTCATCCACACCTTCGGCTC
CCCTTGA
back to top

protein sequence of rna9996

>rna9996-protein ID=rna9996-protein|Name=rna9996|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MSRRLLKYGGEALKPHFVDGRWERPLISKRVVSKRFISLCFLPPFLPASL
PPLISPSSPSFLLCMQRVPDLFIFLNHVAILFVCQAARLRKEAVMNGRVG
PWQPSVQDSNGEKREGTKQVLGWDPAWDTVKAPKILRPAKLHARERNREE
RFQKIETAMAGMAAKIAQHKESMRALKPKPGIETLYKKVVAKAQKRR
back to top

mRNA from alignment at KK037259.1:86100..87186+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9996 ID=rna9996|Name=rna9996|organism=Nannochloropsis gaditana|type=mRNA|length=1087bp|location=Sequence derived from alignment at KK037259.1:86100..87186+ (Nannochloropsis gaditana)
CGTCATTACCGTACCCTCCTCAAaacacctttccctccaaccCTGTTCCA
ACCCGTACATAGCAAACAAAGCCTCGCTTGGTTTCTGGAGGCTTGACAAC
GCACGCGGGCCGCCCAGAGCCGCTTCAGAGATAGTTCACCGGGGTTGAGT
CCGGACTTAACCTTTCGAACGCACCAGGCATCcgcagggaaaaaaaagat
gaGCCGCCGCCTGCTAAAATATGGTGGCGAGGCCTTGAAACCTCACTTTG
TGGACGGACGGTGGGAGCGTCCCCTGATTTCAAAGCGCGTGGTAAGCAAA
CGTTTCATCAGTCTctgcttcctgcctcccttcctccctgcctcccttcc
tcccttaatctctccctcatccccctccttccttctttgtaTGCAAAGAG
TCCCTGATTTGTTTATTTTTCTGAACCATGTTGCTATTCTCTTCGTCTGT
CAGGCGGCCCGCCTCCGCAAGGAGGCGGTCATGAACGGTCGCGTCGGCCC
ATGGCAGCCCAGCGTTCAGGATTCGaacggggagaagagggagggcacga
AACAGGTCCTGGGATGGGATCCTGCTTGGGACACGGTGAAGGCGCCCAAA
ATATTGAGGCCGGCCAAGCTACACGCGCGGGAGCGGAACCGGGAGGAAcg
gtagggagggggaagaggaagtcgaaagggcgggtggggaagaagagata
tCGCAAATAACCTGCGTCAGGAGTTACCACTCGTGCGTGATAAAGCAGCG
ACTCAATCCTCggacctcccttccttccctgttCACCTCCCCTGGCCCGC
ACAGTTTTCAAAAGATCGAAACGGCGATGGCGGGGATGGCGGCCAAGATC
GCTCAGCACAAAGAGAGCATGCGAGCCTTGAAACCGAAACCGGGGATAGA
AACCTTGTAcaagaaggtggtggccaaGGCGCAAAAACGCCGGTGAGGTT
GGAGGGCCCGGGTCACGGGGAAGAAGCCAAGCGGGCGCGACCCTTCGATG
GATATTCCTCCACCAGAGAGGGCGCCCGAAAGCAAACAATAAATACTTTT
GAAGGTGAAGAAATAATGAACATTGCGCTGAGTTTCT
back to top

Coding sequence (CDS) from alignment at KK037259.1:86100..87186+

>rna9996 ID=rna9996|Name=rna9996|organism=Nannochloropsis gaditana|type=CDS|length=1188bp|location=Sequence derived from alignment at KK037259.1:86100..87186+ (Nannochloropsis gaditana)
atgaGCCGCCGCCTGCTAAAATATGGTGGCGAGGCCTTGAAACCTCACTT
TGTGGACGGACGGTGGGAGCGTCCCCTGATTTCAAAGCGCGTGGTAAGCA
AACGTTTCATCAGTCTctgcttcctgcctcccttcctccctgcctccctt
cctcccttaatctctccctcatccccctccttccttctttgtaTGCAAAG
AGTCCCTGATTTGTTTATTTTTCTGAACCATGTTGCTATTCTCTTCGTCT
GTCAGGCGGCCCGCCTCCGCAAGGAGGCGGTCATGAACGGTCGCGTCGGC
CCATGGCAGCCCAGCGTTCAGGATTCGaacggggagaagagggagggcac
gaAACAGGTCCTGGGATGGGATCCTGCTTGGGACACGGTGAAGGCGCCCA
AAATATTGAGGCCGGCCAAGCTACACGCGCGGGAGCGGAACCGGGAGGAA
cgTTTTCAAAAGATCGAAACGGCGATGGCGGGGATGGCGGCCAAGATCGC
TCAGCACAAAGAGAGCATGCGAGCCTTGAAACCGAAACCGGGGATAGAAA
CCTTGTAcaagaaggtggtggccaaGGCGCAAAAACGCCGGTGAatgaGC
CGCCGCCTGCTAAAATATGGTGGCGAGGCCTTGAAACCTCACTTTGTGGA
CGGACGGTGGGAGCGTCCCCTGATTTCAAAGCGCGTGGTAAGCAAACGTT
TCATCAGTCTctgcttcctgcctcccttcctccctgcctcccttcctccc
ttaatctctccctcatccccctccttccttctttgtaTGCAAAGAGTCCC
TGATTTGTTTATTTTTCTGAACCATGTTGCTATTCTCTTCGTCTGTCAGG
CGGCCCGCCTCCGCAAGGAGGCGGTCATGAACGGTCGCGTCGGCCCATGG
CAGCCCAGCGTTCAGGATTCGaacggggagaagagggagggcacgaAACA
GGTCCTGGGATGGGATCCTGCTTGGGACACGGTGAAGGCGCCCAAAATAT
TGAGGCCGGCCAAGCTACACGCGCGGGAGCGGAACCGGGAGGAAcgTTTT
CAAAAGATCGAAACGGCGATGGCGGGGATGGCGGCCAAGATCGCTCAGCA
CAAAGAGAGCATGCGAGCCTTGAAACCGAAACCGGGGATAGAAACCTTGT
AcaagaaggtggtggccaaGGCGCAAAAACGCCGGTGA
back to top
Synonyms
Publications