rna9976, rna9976 (mRNA) Nannochloropsis gaditana

Overview
Namerna9976
Unique Namerna9976
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length495
Alignment locationKK037259.1:36949..38264 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100976g1.1.mrna
Orig protein idgnl|cribi|Naga_100976g1.1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:36949..38264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100976g1gene9678Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9976rna9976-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20728.1cds9945Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9976 ID=rna9976|Name=rna9976|organism=Nannochloropsis gaditana|type=mRNA|length=495bp
ATGGCCGTCATTCAAGCCTTCCTCCGGCATCATCCTCCCTTCGCCCAAGT
TTGGACCCGTTCTTTGGCATACTACAGCCACGATAAAAAATCACCTGCCC
TTGAACAGCCCTCTCTCGCCCCCTCCGTCCCTCCCTTCCTCGCCCTTGTG
AGGGAGGCAGAGGAGGAAGCCCGCGCCCAGCTCGACAAAAATGGCACGGA
CATGTTGAAGGGGCTTCTCTCCCTCTCCCTCGTCTCCGAGCCCCAGCACA
CGCCTCAGCAGCCACAGCAACCGAGACGACTGGGTGGGCGACAGGGACAC
CGCAGGCAAGCTCCCCCTCCCCCGCAACGCGTGTACAAAGTCCCTCTCCT
CTTCGAGCACCTCCGCAGTCGCCAGCACCGCGACTGCCCTCCCTCCAGCC
ACACCATCGCGCGCCCGCTCCGCCGCCTCCTCTATGGCCTCGTCGGTGTA
GACGGGCCGGTCTGGGAGCAGATCCTGCTCGCTGACGATATGTAG
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protein sequence of rna9976

>rna9976-protein ID=rna9976-protein|Name=rna9976|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MPDTDETLAVVAGLLLRVREDKNIGTSTYGKANTTPEAHNECVEKVVARQ
DCLPTTDASGRTSDVHHAPRAQQSAGAESSRAPSKQPPPRATDSTTTTLA
PLGKKKRGRPKASRMLREERGLPRKRRLGPTVGSGKEGGGSTTGDKGEQK
DPSGKALEERVVARFNDPAGASFWHSRPHHLIDQDSAIICTARMDMVAAA
VSLVKSQRLDPVKAHDFL
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mRNA from alignment at KK037259.1:36949..38264+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9976 ID=rna9976|Name=rna9976|organism=Nannochloropsis gaditana|type=mRNA|length=1316bp|location=Sequence derived from alignment at KK037259.1:36949..38264+ (Nannochloropsis gaditana)
ATGCCAGATACGGACGAAACTTTGGCTGTAGTGGCAGGGTTATTGTTGCG
AGTAAGGTGAGTTTAAGGGCGGCACCAGTATCGCCGGTAATAATCTCCCT
GATCTACTAATGGCGTCACGCCCTTTTCAACTCGTTGACTCTATTCATGT
ACAGGGAGGACAAAAATATCGGCACGTCAACATATGGTAAAGCAAATACC
ACACCGGAGGCACATAATGAATGCGTGGAAAAAGTTGTCGCCCGCCAAGA
TGTAAGTGGAATGCCCAGCCCTCAGGGACATATCTGTTAGCGTGCCCTGA
GACTCAAATACGCAGTGCTGCTTATTATGAACAGTGCCTGCCAACCACCG
ATGCTAGCGGCAGGACAAGTGATGTGCATCATGCACCGAGAGCGCAGCAG
AGCGCGGGCGCGGAAAGTAGCAGAGGTGAGATCTTTAGAATACATGTGTC
CGAGCTCGGTGTCACTGCCGAGGAGACTGGACGGCACGCCTGTGTCTGGC
GTGAGCCTGGGAAAGGATtctacatatatatatatatatagagagagaga
gaggaagacatATCAATGTAAATTGTGGGTTTTGCTGGGGCCGCCACTCA
AAGTCAcctttcctcgctttccctcctatgccccctcccccttcgacAGC
CCCGTCCAAGCAACCGCCCCCCCGCGCCACGGACTCGACAACGACGACGC
TCGCCCCattgggaaagaaaaagcggggTCGACCAAAGGCCTCGCGAATG
ttgagggaagagagaggctTGCCCCGGAAGCGGAGGCTGGGCCCGACCGT
GGGctcgggaaaggaaggaggggggagtaCAACGGGTGACAAGGGAGAGC
AAAAGGATCCCTCAGGCAAAGCattggaagagagggtggtAGCACGCTTC
AATGACCCTGCTGGGGCCTCGTTCTGGTGATTatggcgggaggggaggga
atggcagGGGTGGGTATTGGACAGGCATCCGTCAGAATATTTCTTTTTCA
AGATTGTCGCCCGGGGCTCGTCCCCTGGCCCTGATTCTGACGCAGACAGT
CATGTCTCTTCCCGCGGACCCCTTTTATCCCCCCTCCTACCGCCCTtgtt
cctttctcctcttccctcttgccctgTCCCCCCCATGACCtcaccgtcct
ccctctcgccctccccccccttacGCCAGGCACTCCCGACCCCACCACTT
GATCGACCAGGACAGTGCGATCATCTGCACGGCCCGGATGGAtatggtgg
cggcggccgtcTCCCTAGTCAAGAGCCAGAGGCTGGACCCCGTGAAGGCG
CACGACTTcctgtgag
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Coding sequence (CDS) from alignment at KK037259.1:36949..38264+

>rna9976 ID=rna9976|Name=rna9976|organism=Nannochloropsis gaditana|type=CDS|length=3285bp|location=Sequence derived from alignment at KK037259.1:36949..38264+ (Nannochloropsis gaditana)
ATGCCAGATACGGACGAAACTTTGGCTGTAGTGGCAGGGTTATTGTTGCG
AGTAAGGGAGGACAAAAATATCGGCACGTCAACATATGGTAAAGCAAATA
CCACACCGGAGGCACATAATGAATGCGTGGAAAAAGTTGTCGCCCGCCAA
GATTGCCTGCCAACCACCGATGCTAGCGGCAGGACAAGTGATGTGCATCA
TGCACCGAGAGCGCAGCAGAGCGCGGGCGCGGAAAGTAGCAGAGCCCCGT
CCAAGCAACCGCCCCCCCGCGCCACGGACTCGACAACGACGACGCTCGCC
CCattgggaaagaaaaagcggggTCGACCAAAGGCCTCGCGAATGttgag
ggaagagagaggctTGCCCCGGAAGCGGAGGCTGGGCCCGACCGTGGGct
cgggaaaggaaggaggggggagtaCAACGGGTGACAAGGGAGAGCAAAAG
GATCCCTCAGGCAAAGCattggaagagagggtggtAGCACGCTTCAATGA
CCCTGCTGGGGCCTCGTTCTGGCACTCCCGACCCCACCACTTGATCGACC
AGGACAGTGCGATCATCTGCACGGCCCGGATGGAtatggtggcggcggcc
gtcTCCCTAGTCAAGAGCCAGAGGCTGGACCCCGTGAAGGCGCACGACTT
cctgtgaATGCCAGATACGGACGAAACTTTGGCTGTAGTGGCAGGGTTAT
TGTTGCGAGTAAGGGAGGACAAAAATATCGGCACGTCAACATATGGTAAA
GCAAATACCACACCGGAGGCACATAATGAATGCGTGGAAAAAGTTGTCGC
CCGCCAAGATTGCCTGCCAACCACCGATGCTAGCGGCAGGACAAGTGATG
TGCATCATGCACCGAGAGCGCAGCAGAGCGCGGGCGCGGAAAGTAGCAGA
GCCCCGTCCAAGCAACCGCCCCCCCGCGCCACGGACTCGACAACGACGAC
GCTCGCCCCattgggaaagaaaaagcggggTCGACCAAAGGCCTCGCGAA
TGttgagggaagagagaggctTGCCCCGGAAGCGGAGGCTGGGCCCGACC
GTGGGctcgggaaaggaaggaggggggagtaCAACGGGTGACAAGGGAGA
GCAAAAGGATCCCTCAGGCAAAGCattggaagagagggtggtAGCACGCT
TCAATGACCCTGCTGGGGCCTCGTTCTGGCACTCCCGACCCCACCACTTG
ATCGACCAGGACAGTGCGATCATCTGCACGGCCCGGATGGAtatggtggc
ggcggccgtcTCCCTAGTCAAGAGCCAGAGGCTGGACCCCGTGAAGGCGC
ACGACTTcctgtgaATGCCAGATACGGACGAAACTTTGGCTGTAGTGGCA
GGGTTATTGTTGCGAGTAAGGGAGGACAAAAATATCGGCACGTCAACATA
TGGTAAAGCAAATACCACACCGGAGGCACATAATGAATGCGTGGAAAAAG
TTGTCGCCCGCCAAGATTGCCTGCCAACCACCGATGCTAGCGGCAGGACA
AGTGATGTGCATCATGCACCGAGAGCGCAGCAGAGCGCGGGCGCGGAAAG
TAGCAGAGCCCCGTCCAAGCAACCGCCCCCCCGCGCCACGGACTCGACAA
CGACGACGCTCGCCCCattgggaaagaaaaagcggggTCGACCAAAGGCC
TCGCGAATGttgagggaagagagaggctTGCCCCGGAAGCGGAGGCTGGG
CCCGACCGTGGGctcgggaaaggaaggaggggggagtaCAACGGGTGACA
AGGGAGAGCAAAAGGATCCCTCAGGCAAAGCattggaagagagggtggtA
GCACGCTTCAATGACCCTGCTGGGGCCTCGTTCTGGCACTCCCGACCCCA
CCACTTGATCGACCAGGACAGTGCGATCATCTGCACGGCCCGGATGGAta
tggtggcggcggccgtcTCCCTAGTCAAGAGCCAGAGGCTGGACCCCGTG
AAGGCGCACGACTTcctgtgaATGCCAGATACGGACGAAACTTTGGCTGT
AGTGGCAGGGTTATTGTTGCGAGTAAGGGAGGACAAAAATATCGGCACGT
CAACATATGGTAAAGCAAATACCACACCGGAGGCACATAATGAATGCGTG
GAAAAAGTTGTCGCCCGCCAAGATTGCCTGCCAACCACCGATGCTAGCGG
CAGGACAAGTGATGTGCATCATGCACCGAGAGCGCAGCAGAGCGCGGGCG
CGGAAAGTAGCAGAGCCCCGTCCAAGCAACCGCCCCCCCGCGCCACGGAC
TCGACAACGACGACGCTCGCCCCattgggaaagaaaaagcggggTCGACC
AAAGGCCTCGCGAATGttgagggaagagagaggctTGCCCCGGAAGCGGA
GGCTGGGCCCGACCGTGGGctcgggaaaggaaggaggggggagtaCAACG
GGTGACAAGGGAGAGCAAAAGGATCCCTCAGGCAAAGCattggaagagag
ggtggtAGCACGCTTCAATGACCCTGCTGGGGCCTCGTTCTGGCACTCCC
GACCCCACCACTTGATCGACCAGGACAGTGCGATCATCTGCACGGCCCGG
ATGGAtatggtggcggcggccgtcTCCCTAGTCAAGAGCCAGAGGCTGGA
CCCCGTGAAGGCGCACGACTTcctgtgaATGCCAGATACGGACGAAACTT
TGGCTGTAGTGGCAGGGTTATTGTTGCGAGTAAGGGAGGACAAAAATATC
GGCACGTCAACATATGGTAAAGCAAATACCACACCGGAGGCACATAATGA
ATGCGTGGAAAAAGTTGTCGCCCGCCAAGATTGCCTGCCAACCACCGATG
CTAGCGGCAGGACAAGTGATGTGCATCATGCACCGAGAGCGCAGCAGAGC
GCGGGCGCGGAAAGTAGCAGAGCCCCGTCCAAGCAACCGCCCCCCCGCGC
CACGGACTCGACAACGACGACGCTCGCCCCattgggaaagaaaaagcggg
gTCGACCAAAGGCCTCGCGAATGttgagggaagagagaggctTGCCCCGG
AAGCGGAGGCTGGGCCCGACCGTGGGctcgggaaaggaaggaggggggag
taCAACGGGTGACAAGGGAGAGCAAAAGGATCCCTCAGGCAAAGCattgg
aagagagggtggtAGCACGCTTCAATGACCCTGCTGGGGCCTCGTTCTGG
CACTCCCGACCCCACCACTTGATCGACCAGGACAGTGCGATCATCTGCAC
GGCCCGGATGGAtatggtggcggcggccgtcTCCCTAGTCAAGAGCCAGA
GGCTGGACCCCGTGAAGGCGCACGACTTcctgtga
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Synonyms
Publications