rna9971, rna9971 (mRNA) Nannochloropsis gaditana

Overview
Namerna9971
Unique Namerna9971
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3225
Alignment locationKK037259.1:12583..12904 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100261g5.1654.mrna
Orig protein idgnl|cribi|Naga_100261g5.1654
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:12583..12904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100261g5gene9673Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9971rna9971-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20737.1cds9940Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9971 ID=rna9971|Name=rna9971|organism=Nannochloropsis gaditana|type=mRNA|length=3225bp
ATGGTATTACGACTCCTACCTTATAGCAATACAGTTTTATACAGCTCCAA
TGGCCATGAGAACATTTTGACAGCCTCTACCCCGGCTCCAATCGTGAGAC
GCAGCACGGTCAGCAATATCAGAAATAGGATTTTCAATCATGTATGGACC
GTCCTTCTTTGTGTGCTACTCTTGCCGAAAATGGCCACGGCGTCATTTTC
GCTCGTCAAATTCCTAGAGGGCACTGTCTCGGCTGAAAGCTATCCAGGCC
CGTCGTCTTCGTATCTTCGCACTCGCGACGGACGAAAGCACCGCTACCTA
GCTGTACTTGAACAAGATAAAGTGTCTCGAGATGAAGTTCAGAGGCAGGA
ACCGAGCTGGAGGGGGGGGTCGGGGAGGGCGATCGATGAGCGGGATATTC
ACAGGGGAGGGGAGCGTGAGGAGCGCGATGAGTGGCTCGAGCAATGTTTC
GCGGTCCTTGCTCGCCATCCCGACGCCTCAGCCCTTTGTCACAGCCTCGC
GCGCCCTCGAGCCGCCCACTCCGCACTCGATGCGTCGATGGAGAGCACCG
ACATCGGTGCCTCTGGCCCTCCTCGGTCACACTTCTCCTCCAGAGCCCTC
CACGCCACCATCCAGGACAGCAACGGATTCGCCACTTTTCAAACCCCCTC
GAGCTGGATCCACCTAGGGCTCGCCTTCGCGTGTGTGATGGCTGCGGCCA
TCGCCAGCGGGCTTACTATCGGACTCATGTCCATCGAACCGCTCGAGCTT
GAGATCAAGGAGCGGATCGGAACGGTGGAGGAGCGCAGCCAGGCCCACCG
CCTCCTCCCCCTCCTGAACCGCCGGCACCTCCTCCTTGTCACCCTCCTCC
TCTTCAACGCCGCAGCCGCCGAGGCTCTTCCCCTCTTCCTTGATGCTCTG
GTGCCAGGCTACATTGCTGTTATCCTCTCGGTTACCGCTGTCCTCTTTTT
CGGGGAAATTTTCCCCTCGGCCATCTTCATGGGTCCGAACCAGCTCAAGC
TCGGCTCTCGCATGACCCCAGTGGTCTGGTGCCTCATCTGCTTCTTCTTC
CCCATCGCCTGCCCCATTGCCTGGTGCTTGGACAGGTTCCTCGGCGACGA
GCACGGGCACGGAAAGCGCTACTCTCGGGAGGAGCTCTCAGCCCTGATGG
AGATCCACCTCAAGCAAAGACGGGGAGGGAAGAACGGCGACAAGGCGGAC
GAGGCGCAGGCAACCCCAGGCGCTACTCCCTCCCTCGTGCCCTCCTCCTC
CCTCGCACTCGCCCCGGCGGGAAAGCGGACGCCGGCCTTGCTCTCTCTCC
ACACCGCCTCCTCCTTCCCGCCCTCCGCCCTCGCCTCCCACGCTCTCCTG
GCCAACGCCTCGCCCCTCTCCCCCCCCGAAGTCAGACTCGAGGAGGATGC
ACAGGAGGGGGTTAAGAAAGGCCGACGAACGAAGAAAGGGAAAAAGCACA
ACCAAGGGCAGTCCTCGCACTCCCCGGGGCCGGTCCCGCCCGCCGCGGGC
GCCTTCGCCCCCCCCGCTCCCCACTCCACCCTCCTCTCCAAGCGCGAGGT
AGATATCGTGGTAGGGGTGCTACAGATCTCCAACAAGGTGGTGGCGGACT
GCATGGTGCCCTGGACAAGCGTCTGTTGTCTGGCAGTGGATGCGCCGCTC
AACGAGGAAACGCTGAAGGCGATCCGAGCTGCTGGCTTCAGCCGACTGCC
CGTGTGTTTTCGGCAGGGAGGGGGGAAGGAAGGAAGGGAGGGCGGGCGGG
GAGGAAGTTCCGGGGGGGAAATGAACGGCACTCGAGAAGATGCACGGGCC
TCAGGGAGGGAATGGAGGGAGGGAAGACGGGGAGAAGGGTGGGTGGGAAA
GCGGGAGGCGGCCTCGGTGTGCGGATACGTGCTGACCAAGTCGTTGATCG
AAGTGGATCCCCACGCGGGCCTGACGGTGGGCGCGATGAAGAAGCGGCTG
GTGCGTTGCCCCATCGTGGTGGCGCCCTCCTGCCCCTTGATCGACATCCT
CTCCACCTTTCAGCTCGGACACGCGCACCTGGCCCTGGTCAGTGAGGCAC
CGGAGGAGACTCTGGCCTGCCTGCTGGGCAAGGGCGAGGGCGAGGGCGGG
CTCACGCCTGAGAGGATCGCGCCCGTGGGGATCATCACGCTGGAGGACGT
GATGGAGATGATGCTCCAGACGGAGATCTGGGACGAGACAGATGTCAGGG
AGAGGACGGAGAGCGTGTTGACGGCGGAGGAGGAGGAAGAGGAGAAAGAA
ATGAGCGTGGTGCCGACAGAGGGGAGACGCGAAGAAGCACAGGGAGCTTC
TAGAAGCATGCGATCCTTCTCGCTGAGGGCGCACAGGAAGGGACCTGGGG
ACGGGCCAGGAAGAGAGGGAGGGCAGGACGAAGGGCGGGGAGGCTCCCCG
TTCTCCGTGGGGAGGCATGCCAGCAAGTACGCCCACAGCCCCGCGCTCTT
TCCGAGCATTGCGCACAATCAGGACGGTAGCCCCGTCAGTACCAATGTGA
GCAGCATGACGAGCAGCCAGTCCCAGCTGAGCCTGGCCCGGGGGCTCAGC
AGCAACAAAAGCGTGATAATTTCCAGCGCCATGATGGGTCGCTATCCGTC
CCTGCCCCTCTCCACCCCCGCGGCTTCGGCAACCGCGCGTGCCCTGGCGG
CGGCCGCAGCCGCTGCTGCCTCTGAAGAGGCCCCTCGACGTCCTTCTCCC
TCCTTGGGCGGCGACGCGACGGTCAACACCTCCCTCCGGCCTATCTCCTT
TGTCTCCTCCACCTCGACCTCTTCTTCCACCGCCTCATCTAACACAGTAT
ACAACTGGTTACGGCTCCGGCATGCGGTCAAGCGCTACAGTCGCGCGCAA
CTCGAACAGCTGATGTTGGACGTGGAGGAAGAGGCGGAGCGGGAGAGAGG
TGTGGAAGGGACAACAAAGGGAACTATAACGAGGGACGGGGGTCCAGTCG
AGGAGGAGGAAGAGGGGCCAGAAGAGGACGGGTGGGAGAGAGAGGAAGCA
GGGAGGACCCGGAAAGCAGGAGCAGAGGAGGGAGCGGGCGGCGAGAGGGT
CGTGCAGCTGCAGAAGCTGTCCACTGTTTTGCACCGTAGTTTTCGTGGGG
GAAGCCTGCGCGTGATCCGGGAAGGAAGAAAGGAAGGTGAGGATGTCCAC
GCGGGTGCCATCGCCATACCTCCTGATGTCCAAGAGGCCAACCCCGAGCT
GGTCGAGGAGCTTATGAAGGAGTGA
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protein sequence of rna9971

>rna9971-protein ID=rna9971-protein|Name=rna9971|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MDCQIGRWHQWKNSLCRDIRSSWKSSGSSNKTLLPDSPSLFISLCFKSSI
TDSSPEAFPSTDLYDIIRASIKIFFSF
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mRNA from alignment at KK037259.1:12583..12904+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9971 ID=rna9971|Name=rna9971|organism=Nannochloropsis gaditana|type=mRNA|length=322bp|location=Sequence derived from alignment at KK037259.1:12583..12904+ (Nannochloropsis gaditana)
ATGGACTGCCAAATCGGAAGATGGCACCAGTGGAAGAATAGTTTATGCCG
AGACATCAGATCCTCTTGGAAATCAAGGTGTGTATTGTTTTTTTATGTAA
TCCTACGGCATTTCGCCATTCATCATGAGTTTTTATTTCTGCGTTGTACA
TTTTCCCCTCATCAGCGGCAGCTCCAACAAAACTCTCCTGCCCGACTCAC
CTTCATTGTTTATCAGCTTGTGCTTCAAATCTTCCATCACCGATTCCTCC
CCCGAAGCCTTCCCGTCCACGGACCTCTACGACATCATACGTGCTTCCAT
CAAGATATTCTTCTCTTTTTAA
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Coding sequence (CDS) from alignment at KK037259.1:12583..12904+

>rna9971 ID=rna9971|Name=rna9971|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at KK037259.1:12583..12904+ (Nannochloropsis gaditana)
ATGGACTGCCAAATCGGAAGATGGCACCAGTGGAAGAATAGTTTATGCCG
AGACATCAGATCCTCTTGGAAATCAAGCGGCAGCTCCAACAAAACTCTCC
TGCCCGACTCACCTTCATTGTTTATCAGCTTGTGCTTCAAATCTTCCATC
ACCGATTCCTCCCCCGAAGCCTTCCCGTCCACGGACCTCTACGACATCAT
ACGTGCTTCCATCAAGATATTCTTCTCTTTTTAAATGGACTGCCAAATCG
GAAGATGGCACCAGTGGAAGAATAGTTTATGCCGAGACATCAGATCCTCT
TGGAAATCAAGCGGCAGCTCCAACAAAACTCTCCTGCCCGACTCACCTTC
ATTGTTTATCAGCTTGTGCTTCAAATCTTCCATCACCGATTCCTCCCCCG
AAGCCTTCCCGTCCACGGACCTCTACGACATCATACGTGCTTCCATCAAG
ATATTCTTCTCTTTTTAA
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Synonyms
Publications