EWM20746.1, cds9933 (CDS) Nannochloropsis gaditana

Overview
NameEWM20746.1
Unique Namecds9933
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:119900..119934 -
Alignment locationKK037258.1:119565..119697 -
Alignment locationKK037258.1:119292..119420 -
Alignment locationKK037258.1:119092..119152 -
Alignment locationKK037258.1:118661..118763 -
Alignment locationKK037258.1:118357..118452 -
Alignment locationKK037258.1:118165..118214 -
Alignment locationKK037258.1:117955..118112 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20746.1
Productmembrane protein- a permease
Orig transcript idgnl|cribi|Naga_100249g9.5592.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:119900..119934 -
KK037258.1supercontigKK037258.1:119565..119697 -
KK037258.1supercontigKK037258.1:119292..119420 -
KK037258.1supercontigKK037258.1:119092..119152 -
KK037258.1supercontigKK037258.1:118661..118763 -
KK037258.1supercontigKK037258.1:118357..118452 -
KK037258.1supercontigKK037258.1:118165..118214 -
KK037258.1supercontigKK037258.1:117955..118112 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002549UPF0118
Homology
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|585100608|gb|EWM20746.1| (membrane protein- a permease [Nannochloropsis gaditana])

HSP 1 Score: 514.227 bits (1323), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MAVAHRHGDELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLDGRNGGKPPCAGSEGPRGYYQNRTAEETPIQPVDNNEGKLQTVSTIRVAFPSKKSSSLNSGVNFYMPDVYIKIYGYVFLAEIKKL 254
            MAVAHRHGDELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLDGRNGGKPPCAGSEGPRGYYQNRTAEETPIQPVDNNEGKLQTVSTIRVAFPSKKSSSLNSGVNFYMPDVYIKIYGYVFLAEIKKL
Sbjct:    1 MAVAHRHGDELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLDGRNGGKPPCAGSEGPRGYYQNRTAEETPIQPVDNNEGKLQTVSTIRVAFPSKKSSSLNSGVNFYMPDVYIKIYGYVFLAEIKKL 254          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|298710168|emb|CBJ31878.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 182.185 bits (461), Expect = 2.241e-51
Identity = 83/161 (51.55%), Postives = 118/161 (73.29%), Query Frame = 0
Query:   10 ELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLD 170
            ++RRYIRLKT V +L A +V   L +L V  + +FG++TFVLN++PN GP++AT LP+PL +F PD+S   +VLA VLP+  H  +G  +EP LFGE  E+ P+++LLSLAFW  LWG+ GMIL+VP++   RIVC +L+HPYA+   R++EG +F+A  D
Sbjct:  194 QIRRYIRLKTMVGMLAATVVTTMLWVLGVQMAYVFGIITFVLNFVPNLGPMIATFLPMPLAIFDPDMSHLNQVLAFVLPTTAHLVIGNLVEPGLFGESFELSPVVVLLSLAFWGSLWGIPGMILAVPMVVITRIVCDHLDHPYAKTLMRLLEGNVFEARED 354          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|612400428|ref|XP_007515733.1| (membrane protein [Bathycoccus prasinos] >gi|412994101|emb|CCO14612.1| membrane protein [Bathycoccus prasinos])

HSP 1 Score: 143.28 bits (360), Expect = 1.590e-36
Identity = 79/209 (37.80%), Postives = 120/209 (57.42%), Query Frame = 0
Query:    6 RHGDELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLE--HPYARVAARIIEGRLFDAGLDGRNGGKPPCAG----SEGPRGYYQNRTAEETPIQPVDNNEGK 208
            R    ++RYI LK FV  L   +       L V  + +FG+L FV+N+IP+ GPI+AT+LPLP+V+ S D+      LA++LP + HF +G  +EP+L G HL++HPI +LL L FW +LWG+ GM+L+ P+ A ++I+C+++E  HP A + +  IE       LDG+    PP        EG R   Q+       ++ V    G+
Sbjct:  223 RIETRIKRYILLKFFVSTLNGFIAASIYYALNVELAMVFGVLHFVMNFIPHVGPIIATVLPLPVVLVSKDIHFLHVTLAILLPGMTHFTIGNVVEPKLMGGHLDLHPITVLLCLIFWGMLWGIPGMVLAAPITASLKILCESVEVMHPLALILSGNIE-----EALDGK---APPTVAEPSIEEGVRTVVQDTMDGLHALKEVATTGGE 423          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|551642860|ref|XP_005824226.1| (hypothetical protein GUITHDRAFT_89764 [Guillardia theta CCMP2712] >gi|428168299|gb|EKX37246.1| hypothetical protein GUITHDRAFT_89764 [Guillardia theta CCMP2712])

HSP 1 Score: 142.51 bits (358), Expect = 3.819e-36
Identity = 74/204 (36.27%), Postives = 118/204 (57.84%), Query Frame = 0
Query:   10 ELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLDGRNGGKPPCAGSEGPRGYYQNRTAE-----ETPIQPVDNNEGK 208
            +++RYI  K  +     +++G  L +L+V  + +FGLL  +LN+IPN G +++TLLP+P+V+F P  +     LA  +PS  H   G  +EPR+ G  +++HP+++LLSL  W  LWGV GMILSVP+ A ++I  Q+L+HP  R  A + EGR+        + G+P  + S+ P    ++   E     +    P D +E K
Sbjct:  231 QVKRYIGFKVLLSTTTGIVIGISLLILKVDLALVFGLLAGLLNFIPNVGGVISTLLPMPVVIFDPSKTWLDIFLAFAIPSFVHAVTGNIIEPRVLGGAMDLHPVVVLLSLMLWGSLWGVVGMILSVPITAVIKICLQSLDHPLPRFLAGMFEGRV-------ESPGEPSFSYSQIPSSSVEHEMIEVNVVPDVARSPEDIDESK 427          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|950896519|ref|XP_014529052.1| (hypothetical protein JH06_1183 [Blastocystis sp. subtype 4] >gi|902863663|gb|KNB45609.1| hypothetical protein JH06_1183 [Blastocystis sp. subtype 4])

HSP 1 Score: 135.576 bits (340), Expect = 1.821e-34
Identity = 66/216 (30.56%), Postives = 124/216 (57.41%), Query Frame = 0
Query:    2 AVAHRHGDELRRYIRLKTFVCVLIAVLVGCCLSL-LRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLDGRNGGKPPCAGSEGPRGYYQNRTAEETPIQPVDNNEGKLQTVSTIR 216
            ++ ++  +++ RY+ +KT + +L   +  C   + L VP + +F +L F LN+IP+ GPI+AT +P+PLV+F P  +    +LA+ LPS+ +F +  ++EP++ G+ L +HPI++++ L  W+++WG  G + +VPL AC++I   N++HPYA++    + G      +   N  K     ++      QN T     +     ++ +LQ + T R
Sbjct:   87 SIRYKIENQITRYLIIKTVLSLLAGTISYCIYGVFLHVPMAFIFAMLFFALNFIPHIGPIIATCIPVPLVLFDPRFTNVQIILAIALPSIMNFILQDFIEPKVLGDSLHLHPIVVIVCLVVWAIIWGSIGAVFAVPLTACVKIALHNVDHPYAKIVDAWLAGDFCCVHIHD-NDEKQEDVIAKQLTAEKQNHTIR---VAKHAEDQIQLQKIHTTR 298          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|325189672|emb|CCA24156.1| (transmembrane protein putative [Albugo laibachii Nc14])

HSP 1 Score: 135.961 bits (341), Expect = 8.990e-33
Identity = 80/202 (39.60%), Postives = 125/202 (61.88%), Query Frame = 0
Query:   10 ELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPD--LSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDA--GLDGRNGGKPPCAGSEGP---RGYYQN----RTAEETPIQ 200
            +++R++ LK F+ + +A+LV      L V  + L+G+LTF+LN+IPN G +VA+L+P+ ++V +P   ++   K LA++LP   H FVG ++EPR+FG+ LE+ P+I++LSL+ W +LWGV GMILSVPL A  +I+  +L+     VA  ++EGR F     +   N  +    G E       YY+N    RTA E  I+
Sbjct:  263 DIQRFVTLKCFLSLFVALLVTVVYVWLNVGLAILWGILTFILNWIPNVGAMVASLIPVLIIVITPSSVMNTMEKFLAVLLPMCLHAFVGNFIEPRVFGKKLEMDPVIVILSLSTWGLLWGVVGMILSVPLTAAFKIMLSHLKLWPEVVA--LMEGRYFAKYDCVSTLNDIESKSLGMEAKLDSNDYYENLGLERTATEQQIK 462          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|1088331744|gb|OHB81538.1| (hypothetical protein A2Z38_08875 [Planctomycetes bacterium RBG_19FT_COMBO_48_8])

HSP 1 Score: 131.724 bits (330), Expect = 1.013e-32
Identity = 61/155 (39.35%), Postives = 100/155 (64.52%), Query Frame = 0
Query:    9 DELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGR 163
              ++RY+        +  +LVG  L++L+V F  +FG L F+LN+IP+ G ++ATLLPLP+ +  P L + +KVL LV+P    F +G  ++P++ GE L++HP+++LLSL F+  +WG+ GM L+VP+ A ++I+ Q     Y R  A +I G+
Sbjct:  204 SRIKRYVLTMMLTSGITGILVGLVLTVLKVEFGWMFGFLAFLLNFIPSIGSVIATLLPLPVALIDPQLGIISKVLVLVIPGSIQFVIGNLIQPKMMGESLDLHPVVVLLSLIFFGTIWGIIGMFLAVPITAVVKILLQRFG--YTRAIADLISGK 356          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|575422013|gb|ETX06008.1| (hypothetical protein ETSY2_19635 [Candidatus Entotheonella sp. TSY2])

HSP 1 Score: 129.028 bits (323), Expect = 6.318e-32
Identity = 67/155 (43.23%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   10 ELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRL 164
             ++RYI  KT V      +VG  L+ L V  + +FGL  F+LN+IP+ G I+ATLLPLP+V+  P+ ++T  VLA+ LP L  F +G  +EP++ G  L +HP  IL+SL  W ++WG+ GM L++PL A M+I  +  EH      A I+ GRL
Sbjct:  184 RIQRYIMAKTVVSAATGGIVGGLLAFLGVDLALVFGLFAFLLNFIPSIGSIIATLLPLPVVLVDPESTLTTIVLAIGLPGLSQFLIGSVIEPKVVGGTLNLHPATILISLIVWGMIWGIVGMFLAIPLTAVMQIFFERFEHTAP--IAEILAGRL 336          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|1088307424|gb|OHB60131.1| (hypothetical protein A2168_07520 [Planctomycetes bacterium RBG_13_50_24])

HSP 1 Score: 129.028 bits (323), Expect = 7.563e-32
Identity = 61/155 (39.35%), Postives = 100/155 (64.52%), Query Frame = 0
Query:    9 DELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGR 163
              ++RY+    F   +  +LVG  L++L V F  +FG L F+LN+IPN G I+AT+LPLP+ +  P L + +K+L LV+P    F +G  L+P++ GE L++HP+++LLSL F+  +WG+ GM L+VP+   ++I+ Q   + +A   A +I G+
Sbjct:  190 SRIKRYVLTMIFTSGVTGLLVGLVLTILGVKFGWMFGFLAFLLNFIPNIGSIIATILPLPVALIDPQLGMISKILVLVIPGGIQFVIGNLLQPKMMGESLDLHPVVVLLSLIFFGTIWGIIGMFLAVPITGVVKILLQRFGYTHA--IADLIAGK 342          
BLAST of EWM20746.1 vs. NCBI_GenBank
Match: gi|1179912793|ref|WP_083435148.1| (AI-2E family transporter [Rhodopirellula islandica] >gi|831418114|gb|KLU02067.1| transport facilitation [Rhodopirellula islandica])

HSP 1 Score: 129.798 bits (325), Expect = 7.922e-32
Identity = 62/162 (38.27%), Postives = 101/162 (62.35%), Query Frame = 0
Query:    3 VAHRHGDELRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRL 164
            +A++   ++R Y+ +KT + +   ++ G  L L  VP +  FGLL F+LNYIPN GPI+A++LPLP ++  PD S+T  + A+ +        G  LEP+L G   ++HP++ILL+L FW  LWG++GM L+ P+ A ++I    ++    R  A+++ GRL
Sbjct:  214 LAYQVNRQVRSYLFVKTMISLATGIVFGMALWLFGVPMALTFGLLAFLLNYIPNIGPILASILPLPFILLHPDGSLTWMITAIAVTCSIQVASGNLLEPKLMGNSADLHPVVILLALMFWGTLWGITGMFLATPITAAIKIALDRMD--VTRPVAQVMAGRL 373          
The following BLAST results are available for this feature:
BLAST of EWM20746.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100608|gb|EWM20746.1|0.000e+0100.00membrane protein- a permease [Nannochloropsis gadi... [more]
gi|298710168|emb|CBJ31878.1|2.241e-5151.55conserved unknown protein [Ectocarpus siliculosus][more]
gi|612400428|ref|XP_007515733.1|1.590e-3637.80membrane protein [Bathycoccus prasinos] >gi|412994... [more]
gi|551642860|ref|XP_005824226.1|3.819e-3636.27hypothetical protein GUITHDRAFT_89764 [Guillardia ... [more]
gi|950896519|ref|XP_014529052.1|1.821e-3430.56hypothetical protein JH06_1183 [Blastocystis sp. s... [more]
gi|325189672|emb|CCA24156.1|8.990e-3339.60transmembrane protein putative [Albugo laibachii N... [more]
gi|1088331744|gb|OHB81538.1|1.013e-3239.35hypothetical protein A2Z38_08875 [Planctomycetes b... [more]
gi|575422013|gb|ETX06008.1|6.318e-3243.23hypothetical protein ETSY2_19635 [Candidatus Entot... [more]
gi|1088307424|gb|OHB60131.1|7.563e-3239.35hypothetical protein A2168_07520 [Planctomycetes b... [more]
gi|1179912793|ref|WP_083435148.1|7.922e-3238.27AI-2E family transporter [Rhodopirellula islandica... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9964rna9964Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications