rna9912, rna9912 (mRNA) Nannochloropsis gaditana

Overview
Namerna9912
Unique Namerna9912
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length679
Alignment locationKK037257.1:114392..114871 +

Link to JBrowse

Properties
Property NameValue
Productv-type h -transporting atpase 54 kd subunit
Orig transcript idgnl|cribi|Naga_103249g1.2636.mrna
Orig protein idgnl|cribi|Naga_103249g1.2636
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:114392..114871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103249g1gene9619Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9912rna9912-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20792.1cds9881Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9912 ID=rna9912|Name=rna9912|organism=Nannochloropsis gaditana|type=mRNA|length=679bp
CAGCGAGGGGAATCTCCCCTTATGTACACTTCATCAAAATCTCATTTGGG
CACTTCACGTCCTCGAAATTCACATGCCTCGCGTTTATCTTTCTCTTGCC
CCGAAGGTCGCTACGTGCTGCTTCCTTTTGCGTTCAGGAAGACGAAGCTG
GGACGGTGGAAGAGATAACGAGGACAAGACTCTGTAGGAGGAGACGATGA
CGGAACCCCCTTCGACTCCGACGGGCGCAAGCATCCTCCCGGCCGGGTCG
GACTCCTCGGAAGTTCTCACTGATAGAGAGCAGGTGTTGGCTTCTTTTAC
CAATATCCAGTGGGACACCTACGGACGAACGATGCTGGATGCAGGAGAGG
TGAAGATTTTGAAAGACTGCGACGACAAACCCCTGGACTTCCTTTTGGCC
GACCCTGGGGACGCGTCGAAGCTTGTGGACACGTTGCTGAAGCTTTTGAA
CTCAGTCAGCGACCTGGTCATTCAGCAGTACGCCCTGACCCAGCTTCAAG
ACATCCTCTCCGACAACCTGCCCCAGCGCGCCCCCCTCTTCTCCCACGAC
GGGGGGCAAGACTTTCGACGCTCTGCCTTTTTTTGCGGGCCTTCGATGGC
TCGGACCTGTACTGCAAGCAAAGTGCGGCCACGGTCATGGCGCTCCTGTT
CAAGGTACACCCTCCTGCCTCCCCTCCCT
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protein sequence of rna9912

>rna9912-protein ID=rna9912-protein|Name=rna9912|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MDGDLDGFVSRICSELSNSRNPSIKVIVSPLALLLRTEKSRLVFGAHGGV
GFLTKLLKLQVPSLPPSLPLSLPTSCS
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mRNA from alignment at KK037257.1:114392..114871+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9912 ID=rna9912|Name=rna9912|organism=Nannochloropsis gaditana|type=mRNA|length=480bp|location=Sequence derived from alignment at KK037257.1:114392..114871+ (Nannochloropsis gaditana)
aggtGATGGACGGCGACTTGGACGGCTTCGTGTCTCGCATTTGCTCCGAG
CTTAGCAATTCCCGCAATCCAAGCATCAAGGTATTTCcatcgctttcctt
cctcccttttccccatagggcccctctctccccttccctcccccgtcatc
CCTGCTGGAAgtttcccatcctccctccccttcctccctcccccccttcc
tccgtccctcagGTCATCGTatctcccctcgccctgctcCTACGAACGGA
GAAGTCACGCCTGGTCTTTGGTGCCCATGGCGGCGTTGGATTCCTTACCA
AGCTGCTCAAACTCCaggtgccctccctcccaccctcccttcctctctcc
ctccccacctcctgtTCCTGAATGCGTCGACTCTGCCTTTTCTGTCCTGT
AATCGTGTCTCTTCATCGACCCCGCTCCTTACTCTACCATTTCTCATCCA
CACTcttccgccgcttcctcccttcctccc
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Coding sequence (CDS) from alignment at KK037257.1:114392..114871+

>rna9912 ID=rna9912|Name=rna9912|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at KK037257.1:114392..114871+ (Nannochloropsis gaditana)
ATGGACGGCGACTTGGACGGCTTCGTGTCTCGCATTTGCTCCGAGCTTAG
CAATTCCCGCAATCCAAGCATCAAGGTCATCGTatctcccctcgccctgc
tcCTACGAACGGAGAAGTCACGCCTGGTCTTTGGTGCCCATGGCGGCGTT
GGATTCCTTACCAAGCTGCTCAAACTCCaggtgccctccctcccaccctc
ccttcctctctccctccccacctcctgtTCCTGAATGGACGGCGACTTGG
ACGGCTTCGTGTCTCGCATTTGCTCCGAGCTTAGCAATTCCCGCAATCCA
AGCATCAAGGTCATCGTatctcccctcgccctgctcCTACGAACGGAGAA
GTCACGCCTGGTCTTTGGTGCCCATGGCGGCGTTGGATTCCTTACCAAGC
TGCTCAAACTCCaggtgccctccctcccaccctcccttcctctctccctc
cccacctcctgtTCCTGA
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Synonyms
Publications