EWM20792.1, cds9881 (CDS) Nannochloropsis gaditana

Overview
NameEWM20792.1
Unique Namecds9881
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:114397..114471 +
Alignment locationKK037257.1:114604..114762 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20792.1
Productv-type h -transporting atpase 54 kd subunit
Orig transcript idgnl|cribi|Naga_103249g1.2636.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:114397..114471 +
KK037257.1supercontigKK037257.1:114604..114762 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20792.1 vs. NCBI_GenBank
Match: gi|585100682|gb|EWM20792.1| (v-type h+-transporting atpase 54 kd subunit [Nannochloropsis gaditana])

HSP 1 Score: 150.599 bits (379), Expect = 4.662e-46
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 
Query:    1 MDGDLDGFVSRICSELSNSRNPSIKVIVSPLALLLRTEKSRLVFGAHGGVGFLTKLLKLQVPSLPPSLPLSLPTSCS 77
            MDGDLDGFVSRICSELSNSRNPSIKVIVSPLALLLRTEKSRLVFGAHGGVGFLTKLLKLQVPSLPPSLPLSLPTSCS
Sbjct:    1 MDGDLDGFVSRICSELSNSRNPSIKVIVSPLALLLRTEKSRLVFGAHGGVGFLTKLLKLQVPSLPPSLPLSLPTSCS 77
The following BLAST results are available for this feature:
BLAST of EWM20792.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100682|gb|EWM20792.1|4.662e-46100.00v-type h+-transporting atpase 54 kd subunit [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9912rna9912Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications