rna9906, rna9906 (mRNA) Nannochloropsis gaditana

Overview
Namerna9906
Unique Namerna9906
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length306
Alignment locationKK037257.1:99416..100254 -

Link to JBrowse

Properties
Property NameValue
Productdna polymerase zeta catalytic subunit
Orig transcript idgnl|cribi|Naga_100342g1.379.mrna
Orig protein idgnl|cribi|Naga_100342g1.379
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:99416..100254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100342g1gene9613Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20793.1cds9875Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9906rna9906-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9906 ID=rna9906|Name=rna9906|organism=Nannochloropsis gaditana|type=mRNA|length=306bp
ATGCCTCCACCGCAGATTTACAACGCCTCTCCACGATCTCCACACATTAG
AGATGGCGATACCCCACGATCTCCACACATTAGAGATGGCGATACCCCAC
GATCTCCACACATTAGAGATGGCGATACCCCACGATCTCCACGCATTAGA
GATGACGATACCCCACGATCTCCACACATTAGAGATGGCGATACCCCACG
ATCTCCACACATTAGAGATGGCGATACTCCACCACCTCCTCCCTATCGAC
CACCGCCAACGCCTAGCAGCAACACCCGCCGCCAGGCGCCAGTCGCTCCA
CCGTGA
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protein sequence of rna9906

>rna9906-protein ID=rna9906-protein|Name=rna9906|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MPSPSPVASSSSPPPSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLD
PSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRP
YFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAW
EEKRRAAVGAEVVGEEGGVEAQVSGRVREGGREGGREGG
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mRNA from alignment at KK037257.1:99416..100254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9906 ID=rna9906|Name=rna9906|organism=Nannochloropsis gaditana|type=mRNA|length=839bp|location=Sequence derived from alignment at KK037257.1:99416..100254- (Nannochloropsis gaditana)
GTAACTAAGACACGGACGTTCCTGTGATAGCTTCAAGGTCGACACTATGA
CCGCAATATAGCGTCGGGTGGGTAATGGAGCCAATCGAACCCCACCTCCT
CCTTCCCGGACGCGCCGTCCTCTGTGACCCGGTTTCTGTGTTTTCCAGGC
CCGTTAATGTTCAATCATCCCGCCTCTAGCATTGTGCACTCTTTTCGCAT
CCTTTCCTGAGCCTCATCCTTCCCCCACTTCCCTTCGCTGTATCAGAGAG
GCTTCCCCTCAAGACGGGCCAATGCCCTCTCCTTCACCCGTGGCTTCCTC
CTCTTCCCCCCCCCCTTCCTCCTCGTCGTCCTCCCTGACTCCTCGACACC
CACCCCCTTTCATCTCCATCCGCGTCGTACACGTAGACTTCTACCTCCTT
CAGCTATCTCCGTTGCTTGACCCGTCACACCCCTCTCGCTACCCCGCCCT
CTGTGCCCATGTCATGTCTTCCCCTCCCTCGGCACCCTTCCTCCGGGTCC
CCGTCATCCGCATATTTGGCAGCACGCCTGCGGGGCAAAAGGCATGCCTG
CACGTGCACGGAGGTCGCCCGTACTTCTTGATACGTCCGCGGGATTTACC
CGAGGAAGGGGAGGAAGGCGGGAGGGAGGACGGGCTCGTTCGTCTTTGGA
GGGACCCTGCCAGGCTGAAATCCCTGCTGGGGCGGTTGGAGATGGAAGTG
GAGGAGACAATGATGGCTTGGGAAGAGAAGAGGAGGGCAGCGGTCGGGGC
GGAAGTGGTGGGAGAAGAAGGGGGCGTCGAGGCCCAGGTGAGTGGGCGGG
TGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at KK037257.1:99416..100254-

>rna9906 ID=rna9906|Name=rna9906|organism=Nannochloropsis gaditana|type=CDS|length=568bp|location=Sequence derived from alignment at KK037257.1:99416..100254- (Nannochloropsis gaditana)
ATGCCCTCTCCTTCACCCGTGGCTTCCTCCTCTTCCCCCCCCCCTTCCTC
CTCGTCGTCCTCCCTGACTCCTCGACACCCACCCCCTTTCATCTCCATCC
GCGTCGTACACGTAGACTTCTACCTCCTTCAGCTATCTCCGTTGCTTGAC
CCGTCACACCCCTCTCGCTACCCCGCCCTCTGTGCCCATGTCATGTCTTC
CCCTCCCTCGGCACCCTTCCTCCGGGTCCCCGTCATCCGCATATTTGGCA
GCACGCCTGCGGGGCAAAAGGCATGCCTGCACGTGCACGGAGGTCGCCCG
TACTTCTTGATACGTCCGCGGGATTTACCCGAGGAAGGGGAGGAAGGCGG
GAGGGAGGACGGGCTCGTTCGTCTTTGGAGGGACCCTGCCAGGCTGAAAT
CCCTGCTGGGGCGGTTGGAGATGGAAGTGGAGGAGACAATGATGGCTTGG
GAAGAGAAGAGGAGGGCAGCGGTCGGGGCGGAAGTGGTGGGAGAAGAAGG
GGGCGTCGAGGCCCAGGTGAGTGGGCGGGTGCGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGA
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Synonyms
Publications