EWM20793.1, cds9875 (CDS) Nannochloropsis gaditana

Overview
NameEWM20793.1
Unique Namecds9875
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:99416..99983 -

Link to JBrowse

Properties
Property NameValue
Start range99416
Start range.
Protein idEWM20793.1
Productdna polymerase zeta catalytic subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_100342g1.379.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:99416..99983 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Homology
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|585100684|gb|EWM20793.1| (dna polymerase zeta catalytic subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 370.163 bits (949), Expect = 2.020e-129
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MPSPSPVASSSSPPPSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAWEEKRRAAVGAEVVGEEGGVEAQVSGRVREGGREGGREGG 189
            MPSPSPVASSSSPPPSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAWEEKRRAAVGAEVVGEEGGVEAQVSGRVREGGREGGREGG
Sbjct:    1 MPSPSPVASSSSPPPSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAWEEKRRAAVGAEVVGEEGGVEAQVSGRVREGGREGGREGG 189          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|298715260|emb|CBJ27909.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.7962 bits (190), Expect = 2.374e-13
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0
Query:   29 PFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMA 149
            P IS+RVV+VD+YL + S                            ++PV+RIFGSTPAGQ++CLH+HG  PYF++RP  + EE         +   + DP  L +LL +LE  +E  M +
Sbjct:    7 PLISVRVVNVDWYLSEES----------------------------KLPVVRIFGSTPAGQRSCLHLHGALPYFMVRP--MEEESS------AICAQFEDPGSLNALLPQLEQALESAMAS 91          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1160570721|ref|XP_020435268.1| (hypothetical protein PPL_03941 [Polysphondylium pallidum PN500] >gi|281208976|gb|EFA83151.1| hypothetical protein PPL_03941 [Polysphondylium pallidum PN500])

HSP 1 Score: 68.5514 bits (166), Expect = 2.562e-11
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   30 FISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRD-LPEEGEEGG 117
            F SIR+V +DFYL + +  LD +H            S   ++P   VP++R+FGSTPAGQKACLH+H   PYF I   + LP + + G 
Sbjct:   81 FFSIRIVDIDFYLAKPTVPLDVTH------------SPLDNSPIPLVPIVRVFGSTPAGQKACLHLHKLFPYFFIEYSEKLPLDLDYGN 157          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1183472047|gb|ORY95936.1| (hypothetical protein BCR43DRAFT_316967 [Syncephalastrum racemosum])

HSP 1 Score: 70.4774 bits (171), Expect = 8.954e-11
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 0
Query:   30 FISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLP 110
            +IS+RV ++D YL    PL   + P               + P  +VPVIRIFGSTPAGQKACLH+H   PYF + P  LP
Sbjct:   22 YISVRVTNIDHYLTDPGPLDRSNCPF-------------STEPLTKVPVIRIFGSTPAGQKACLHIHQAYPYFYV-PYTLP 88          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|301119837|ref|XP_002907646.1| (DNA polymerase zeta catalytic subunit, putative [Phytophthora infestans T30-4] >gi|262106158|gb|EEY64210.1| DNA polymerase zeta catalytic subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 68.9366 bits (167), Expect = 3.126e-10
Identity = 49/132 (37.12%), Postives = 67/132 (50.76%), Query Frame = 0
Query:   31 ISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLR---VPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAWEEKRRAAVG 159
            + +  V VD+Y+   SPL         PA    V   P S  +LR   VPVIRIFG+TPAGQKA +HVHG  PYF  R  D P+              + D  RL++LL RL  ++E    + +++R+   G
Sbjct:    9 LRVEAVVVDYYMS--SPL---------PA--DSVKKIPASPCYLRAREVPVIRIFGATPAGQKALVHVHGIFPYFYFRTEDDPD--------------FEDAERLRTLLPRLAKDIEAANASKQKQRQQNNG 113          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1176316376|ref|XP_020660991.1| (DNA polymerase zeta catalytic subunit [Pogona vitticeps])

HSP 1 Score: 68.5514 bits (166), Expect = 3.632e-10
Identity = 42/101 (41.58%), Postives = 52/101 (51.49%), Query Frame = 0
Query:   15 PSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRD----LPE 111
            P++S  +   R      S+RVV  D+YL    P LDP              S    AP  +VPV+RIFG+TPAGQK CLH+HG  PY  + P D    LPE
Sbjct:    8 PATSGCAQRSRSAANMFSVRVVTADYYLSSPLPGLDPCQ------------SHFREAPVKKVPVVRIFGATPAGQKTCLHLHGIFPYLYV-PYDGCGHLPE 95          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1026078783|ref|XP_016538602.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X1 [Capsicum annuum])

HSP 1 Score: 68.5514 bits (166), Expect = 3.719e-10
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 0
Query:   30 FISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGRE--DGLVRLWRDPARLK 133
            F S+R+V +D+Y+    P  D S+            S+        VPVIR++G+TPAGQK CLH+HG  PYF +   +L  + +E G E  + L R      +LK
Sbjct:   10 FFSVRIVSIDYYMSPPLPAFDISY------------STFQGGRVNEVPVIRVYGATPAGQKTCLHLHGALPYFYVPCSELSLQSDEKGSECTNALARALEKVLKLK 103          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1026078785|ref|XP_016538603.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X2 [Capsicum annuum])

HSP 1 Score: 68.5514 bits (166), Expect = 3.790e-10
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 0
Query:   30 FISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGRE--DGLVRLWRDPARLK 133
            F S+R+V +D+Y+    P  D S+            S+        VPVIR++G+TPAGQK CLH+HG  PYF +   +L  + +E G E  + L R      +LK
Sbjct:   10 FFSVRIVSIDYYMSPPLPAFDISY------------STFQGGRVNEVPVIRVYGATPAGQKTCLHLHGALPYFYVPCSELSLQSDEKGSECTNALARALEKVLKLK 103          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|325186586|emb|CCA21132.1| (DNA polymerase zeta catalytic subunit putative [Albugo laibachii Nc14])

HSP 1 Score: 67.781 bits (164), Expect = 6.288e-10
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0
Query:   19 SSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLP 110
            S+ + P +   +I + V+HVD+YL   +PL D           A++  SP      RVPVIR+FGSTPAGQKA +H+HG  PYF +R  + P
Sbjct:    2 STIVEPNNDEEYIRVDVLHVDYYLD--APLPDNE--------LANLPVSPYYQKAHRVPVIRVFGSTPAGQKALVHLHGVLPYFYLRCENDP 83          
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1179551756|ref|XP_020696222.1| (DNA polymerase zeta catalytic subunit isoform X3 [Dendrobium catenatum])

HSP 1 Score: 67.781 bits (164), Expect = 7.461e-10
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 0
Query:   22 LTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLI-RPRDLPEEGEEG 116
            +  ++     S+R+V +D+Y+    P LD          C+   SS        VPVIRI+G+TPAGQK CLHVHG  PYF +  P+ L +  EEG
Sbjct:    1 MASQNDSDVFSVRIVSLDYYMSSPIPDLDS---------CS---SSFLGTKVEEVPVIRIYGATPAGQKTCLHVHGALPYFYVPFPKHLLQSSEEG 84          
The following BLAST results are available for this feature:
BLAST of EWM20793.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100684|gb|EWM20793.1|2.020e-129100.00dna polymerase zeta catalytic subunit, partial [Na... [more]
gi|298715260|emb|CBJ27909.1|2.374e-1336.36conserved unknown protein [Ectocarpus siliculosus][more]
gi|1160570721|ref|XP_020435268.1|2.562e-1142.70hypothetical protein PPL_03941 [Polysphondylium pa... [more]
gi|1183472047|gb|ORY95936.1|8.954e-1145.68hypothetical protein BCR43DRAFT_316967 [Syncephala... [more]
gi|301119837|ref|XP_002907646.1|3.126e-1037.12DNA polymerase zeta catalytic subunit, putative [P... [more]
gi|1176316376|ref|XP_020660991.1|3.632e-1041.58DNA polymerase zeta catalytic subunit [Pogona vitt... [more]
gi|1026078783|ref|XP_016538602.1|3.719e-1035.85PREDICTED: DNA polymerase zeta catalytic subunit i... [more]
gi|1026078785|ref|XP_016538603.1|3.790e-1035.85PREDICTED: DNA polymerase zeta catalytic subunit i... [more]
gi|325186586|emb|CCA21132.1|6.288e-1042.39DNA polymerase zeta catalytic subunit putative [Al... [more]
gi|1179551756|ref|XP_020696222.1|7.461e-1039.58DNA polymerase zeta catalytic subunit isoform X3 [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9906rna9906Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications