EWM20793.1, cds9875 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|585100684|gb|EWM20793.1| (dna polymerase zeta catalytic subunit, partial [Nannochloropsis gaditana]) HSP 1 Score: 370.163 bits (949), Expect = 2.020e-129 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 Query: 1 MPSPSPVASSSSPPPSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAWEEKRRAAVGAEVVGEEGGVEAQVSGRVREGGREGGREGG 189 MPSPSPVASSSSPPPSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAWEEKRRAAVGAEVVGEEGGVEAQVSGRVREGGREGGREGG Sbjct: 1 MPSPSPVASSSSPPPSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAWEEKRRAAVGAEVVGEEGGVEAQVSGRVREGGREGGREGG 189
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|298715260|emb|CBJ27909.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 77.7962 bits (190), Expect = 2.374e-13 Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0 Query: 29 PFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMA 149 P IS+RVV+VD+YL + S ++PV+RIFGSTPAGQ++CLH+HG PYF++RP + EE + + DP L +LL +LE +E M + Sbjct: 7 PLISVRVVNVDWYLSEES----------------------------KLPVVRIFGSTPAGQRSCLHLHGALPYFMVRP--MEEESS------AICAQFEDPGSLNALLPQLEQALESAMAS 91
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1160570721|ref|XP_020435268.1| (hypothetical protein PPL_03941 [Polysphondylium pallidum PN500] >gi|281208976|gb|EFA83151.1| hypothetical protein PPL_03941 [Polysphondylium pallidum PN500]) HSP 1 Score: 68.5514 bits (166), Expect = 2.562e-11 Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 30 FISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRD-LPEEGEEGG 117 F SIR+V +DFYL + + LD +H S ++P VP++R+FGSTPAGQKACLH+H PYF I + LP + + G Sbjct: 81 FFSIRIVDIDFYLAKPTVPLDVTH------------SPLDNSPIPLVPIVRVFGSTPAGQKACLHLHKLFPYFFIEYSEKLPLDLDYGN 157
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1183472047|gb|ORY95936.1| (hypothetical protein BCR43DRAFT_316967 [Syncephalastrum racemosum]) HSP 1 Score: 70.4774 bits (171), Expect = 8.954e-11 Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 0 Query: 30 FISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLP 110 +IS+RV ++D YL PL + P + P +VPVIRIFGSTPAGQKACLH+H PYF + P LP Sbjct: 22 YISVRVTNIDHYLTDPGPLDRSNCPF-------------STEPLTKVPVIRIFGSTPAGQKACLHIHQAYPYFYV-PYTLP 88
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|301119837|ref|XP_002907646.1| (DNA polymerase zeta catalytic subunit, putative [Phytophthora infestans T30-4] >gi|262106158|gb|EEY64210.1| DNA polymerase zeta catalytic subunit, putative [Phytophthora infestans T30-4]) HSP 1 Score: 68.9366 bits (167), Expect = 3.126e-10 Identity = 49/132 (37.12%), Postives = 67/132 (50.76%), Query Frame = 0 Query: 31 ISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLR---VPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGREDGLVRLWRDPARLKSLLGRLEMEVEETMMAWEEKRRAAVG 159 + + V VD+Y+ SPL PA V P S +LR VPVIRIFG+TPAGQKA +HVHG PYF R D P+ + D RL++LL RL ++E + +++R+ G Sbjct: 9 LRVEAVVVDYYMS--SPL---------PA--DSVKKIPASPCYLRAREVPVIRIFGATPAGQKALVHVHGIFPYFYFRTEDDPD--------------FEDAERLRTLLPRLAKDIEAANASKQKQRQQNNG 113
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1176316376|ref|XP_020660991.1| (DNA polymerase zeta catalytic subunit [Pogona vitticeps]) HSP 1 Score: 68.5514 bits (166), Expect = 3.632e-10 Identity = 42/101 (41.58%), Postives = 52/101 (51.49%), Query Frame = 0 Query: 15 PSSSSSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRD----LPE 111 P++S + R S+RVV D+YL P LDP S AP +VPV+RIFG+TPAGQK CLH+HG PY + P D LPE Sbjct: 8 PATSGCAQRSRSAANMFSVRVVTADYYLSSPLPGLDPCQ------------SHFREAPVKKVPVVRIFGATPAGQKTCLHLHGIFPYLYV-PYDGCGHLPE 95
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1026078783|ref|XP_016538602.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X1 [Capsicum annuum]) HSP 1 Score: 68.5514 bits (166), Expect = 3.719e-10 Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 0 Query: 30 FISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGRE--DGLVRLWRDPARLK 133 F S+R+V +D+Y+ P D S+ S+ VPVIR++G+TPAGQK CLH+HG PYF + +L + +E G E + L R +LK Sbjct: 10 FFSVRIVSIDYYMSPPLPAFDISY------------STFQGGRVNEVPVIRVYGATPAGQKTCLHLHGALPYFYVPCSELSLQSDEKGSECTNALARALEKVLKLK 103
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1026078785|ref|XP_016538603.1| (PREDICTED: DNA polymerase zeta catalytic subunit isoform X2 [Capsicum annuum]) HSP 1 Score: 68.5514 bits (166), Expect = 3.790e-10 Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 0 Query: 30 FISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLPEEGEEGGRE--DGLVRLWRDPARLK 133 F S+R+V +D+Y+ P D S+ S+ VPVIR++G+TPAGQK CLH+HG PYF + +L + +E G E + L R +LK Sbjct: 10 FFSVRIVSIDYYMSPPLPAFDISY------------STFQGGRVNEVPVIRVYGATPAGQKTCLHLHGALPYFYVPCSELSLQSDEKGSECTNALARALEKVLKLK 103
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|325186586|emb|CCA21132.1| (DNA polymerase zeta catalytic subunit putative [Albugo laibachii Nc14]) HSP 1 Score: 67.781 bits (164), Expect = 6.288e-10 Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0 Query: 19 SSSLTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLIRPRDLP 110 S+ + P + +I + V+HVD+YL +PL D A++ SP RVPVIR+FGSTPAGQKA +H+HG PYF +R + P Sbjct: 2 STIVEPNNDEEYIRVDVLHVDYYLD--APLPDNE--------LANLPVSPYYQKAHRVPVIRVFGSTPAGQKALVHLHGVLPYFYLRCENDP 83
BLAST of EWM20793.1 vs. NCBI_GenBank
Match: gi|1179551756|ref|XP_020696222.1| (DNA polymerase zeta catalytic subunit isoform X3 [Dendrobium catenatum]) HSP 1 Score: 67.781 bits (164), Expect = 7.461e-10 Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 0 Query: 22 LTPRHPPPFISIRVVHVDFYLLQLSPLLDPSHPSRYPALCAHVMSSPPSAPFLRVPVIRIFGSTPAGQKACLHVHGGRPYFLI-RPRDLPEEGEEG 116 + ++ S+R+V +D+Y+ P LD C+ SS VPVIRI+G+TPAGQK CLHVHG PYF + P+ L + EEG Sbjct: 1 MASQNDSDVFSVRIVSLDYYMSSPIPDLDS---------CS---SSFLGTKVEEVPVIRIYGATPAGQKTCLHVHGALPYFYVPFPKHLLQSSEEG 84 The following BLAST results are available for this feature:
BLAST of EWM20793.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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