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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101438g1.8323.mrna |
| Orig protein id | gnl|cribi|Naga_101438g1.8323 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037257.1 | supercontig | KK037257.1:79734..82255 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9898 ID=rna9898|Name=rna9898|organism=Nannochloropsis gaditana|type=mRNA|length=512bp
TCCCAGGCATGCTCCGGGAGATGCTCCGGCTTCAATTCAAGCCCCTGAAA
TTCCACCCCACCTTCGGACCCCGCTTCGATTTGGAGCGGATAATTGACGA
CTACGTGCTCATGTGCATGTTTGTCGGGAACGATTTTATCCCCCACTTGC
CACACATGGATATCGCCGACGGCGCTTTAAACATGATGATGGCCGTATAC
AGGGAGGCTGTGCCGAGTCTGCTTGGCGGCTACATCACAGACAAGGCGAA
GGTACACCAAGGGCGTTTGGAGCTCTTTCTCCGAGAAATTGCGCGAAGGG
AGCCCTTATACTTCCAGTACCGGGCCAAGGAAGACAAAGACCCACAGTGG
CAGGGTGATGGGTACAAGGACCACTACTACCAAAGCAAGCTGGGGATCCC
CCCGGGGGAGAGCGAGGCATCGCAGCAGGCGAGACGAGACGTGGCACGGA
GCTATTTGGAAGGCTTGTACTGGGTCCTAACCTACTACCACGAGGGAGTG
CGGTGAGCACGG back to topprotein sequence of rna9898 >rna9898-protein ID=rna9898-protein|Name=rna9898|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MGRYPRIPCSNVLDVEHFHRGRRPRREGTNTGSLCVFCTRCFAVILLGNH
RTPSPGRFSPPSSSSVVSRVLRDGRQDDSISHRLQDKEDQPHHRILPSPF
LLRRLCIDPFDSVSRLILSSFPVVGHLATLSVTRTSDPMPSIISATILVS
TRANKS back to topmRNA from alignment at KK037257.1:79734..82255+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9898 ID=rna9898|Name=rna9898|organism=Nannochloropsis gaditana|type=mRNA|length=2522bp|location=Sequence derived from alignment at KK037257.1:79734..82255+ (Nannochloropsis gaditana)
GAAAGGGGTAATCAACGGCGTTCAGTGCCATTCCAGGCGTGTATCTTTCC
CGCGATCTTTCCGTTCCCTCTTTAGTCGTACTTCCGCTAGCACTGGGGGA
AGCTTTTTatgcatggaggagggaaatgaatGCAAAAGAGTGCAAAGTAG
ACGTCATAGAGCCGGATAGGGGAGTGTTTTCACCCTTTCTGGGTCCCGTT
acctcgcccttcccccctccctccctccttccctccctccctgcctacct
gcttcttccttaGACTCAGGAAGACAGTCCGTTGCGGCGCTTCTACCCCC
CTGATTTTGAAACGGACCAGAACGGGAAGCAAAACGCATGGGAGAGTGTG
GTTTTAATCCCCTTTATCGACGAAGACTTGATGGTCTCGGCGTTGGCGCA
GgtacagagggagggagggaaggagggcgggcgaggaaaagCTGTTTTGA
TTCCAAGATTAGAGATTAGCGGGCATCACCCAATTGCTTGCTGGGACCAC
GTGgttgcctcctcttctgatGTCTTTACTTCTGCCTCTTTCATGTCTTT
ACGACTGCAGTCTTTGTGTCTTTATATGTCTTTCATACTCCAACATTCAT
TATTTTTGTGATGACATTCCCAGTGCCTTCCATATTGCGATGTTTACGGC
TGCCGTAATGCGTTCTTAATGCGTTCGGTATACTCTCCTGGTCTTTTATT
TTTGCCCTTTGTGCCTCCCGTAATGCGTTCAGTATGCTTATTATACTTCT
ACTATAATGCCTCTTTCAGGTCGACCATCGGACCGCActctcggaggaag
agcgtgCGCGGAACGTGCTAGGGAAAGAGCACACGTTCTGGCCGGCAAAA
GGgtgggtaggagggagggagggagggagggagggagggagagagggagg
gagggaggggaagaagggaaaacGGAAGGGAAGTAGATCGTACCTTATCT
cggcaggaaaggaagtcATAtagcagggaaggggggcgaggaggaagatg
cggACATACAATCTTCCCAAAGAGCACGAACGAATAGGCTTCAATTGGGT
AACGgtgcaaggagagggattACACAGGCTTTCCTAGCCCCTGAATGTCT
CTAAAAAGGCTCGGAGGGTCCCAAAATTTTAAAATCATTGTTATCCGCCT
GGCACCAAGATTGCGAACGAAGGAgtcccccaccttccccccacccccac
cccttccgtcctcccccgcacAGGCATGGTCCCCCGGTAGGTCGACAGCT
CTCAGGCCTGGTGGATgggcggaagaaagggaagagccGTGCCAGCCACC
ATGGGGTTCCCAGACAAATGCCACAGCCCGAAGAATTTGACGATtgaggg
gaaagcagggccaggaggagaggaggaaggagggagggagggagggaaag
gggcaaaAAAGAcacgaaggaaaggaggacaagcccGGGGGAGTCGACGG
CTGGGACcggcgcggaggagagggagggtggtcaAGTCACCaggggttgg
gggaggggggcgagcgcagagaggaaggggaacgggcTATGTTGCAAAGG
AAGGGTAGAGGGCAAGCGGTCATTATGGAACTAGAGTACGCGGTTACTGC
ATCCTTCGCAACCCCTAGAAAGTAAACAATGGGACGCTATCCTCGGATTC
CGTGCAGCAACGTGCTTGACGTGGAGCATTTCCACAGAGGACGCCGACCC
AGACGCGAGGGTACAAACACAGGAAGCCTGTGCGTTTTTTGCACCAGGTG
CTTCGCAGTAATTCTTTTGGGAAACCACAGGACTCCATCGCCAGGAcgtt
tttcccctccctcatcctcctccgtaGTTTCCCGTGTCCTGCGGGACGGT
CGGCAGGACGACAGCAtctcccatcgcctccaggACAAAGAGGACCAACC
CCATCATCGGatcctgccttctcctttcctccttagGCGTCTCTGCATCG
ATCCCTTCGACTCCGTCTCCCGATTGATTTTGTCCTCATTCCCAGTGGTT
GGGCACCTCGCTACCCTCTCAGTGACTAGGACCTCTGACCCCATGCCCTC
GATTATTTCTGCTACCATTTTAGTTTCAACACGTGCGAATAAGAGTTAAT
AAAAAGTTAAAGCCTTGCCATCTCAGCCTATAATGCTGACGCGAAAATAA
CAAGAAATGcgccattccccccctcaaCAAAAGATttatcaacctcctcc
tctctcaacCGCGAGCAGCGGTCATGGACTGCGGAACATGTGGCGCAAAC
AGTTTTCTTGAGCTTGGCCTTGCCGTCCGTAGGGAAAGCCTGGAGGGAAA
GCTCGCCGATATTTTCTCCAAGGGAAAACACTTTCACCACCTTGAAGGCT
CCTTAACTCCGACCTCGCTGTAAGGCTGGTCCTCGAGGTCCTagttcttt
ttcctcctcccgtccgacctccttcccttttttctcccctccgtcaATGT
CACctgtcttttcccctcccttcgctgcTTCTTCCGCGTCGGACACTGGA
ACtggtttcttcctccctccct back to topCoding sequence (CDS) from alignment at KK037257.1:79734..82255+ >rna9898 ID=rna9898|Name=rna9898|organism=Nannochloropsis gaditana|type=CDS|length=471bp|location=Sequence derived from alignment at KK037257.1:79734..82255+ (Nannochloropsis gaditana)
ATGGGACGCTATCCTCGGATTCCGTGCAGCAACGTGCTTGACGTGGAGCA
TTTCCACAGAGGACGCCGACCCAGACGCGAGGGTACAAACACAGGAAGCC
TGTGCGTTTTTTGCACCAGGTGCTTCGCAGTAATTCTTTTGGGAAACCAC
AGGACTCCATCGCCAGGAcgtttttcccctccctcatcctcctccgtaGT
TTCCCGTGTCCTGCGGGACGGTCGGCAGGACGACAGCAtctcccatcgcc
tccaggACAAAGAGGACCAACCCCATCATCGGatcctgccttctcctttc
ctccttagGCGTCTCTGCATCGATCCCTTCGACTCCGTCTCCCGATTGAT
TTTGTCCTCATTCCCAGTGGTTGGGCACCTCGCTACCCTCTCAGTGACTA
GGACCTCTGACCCCATGCCCTCGATTATTTCTGCTACCATTTTAGTTTCA
ACACGTGCGAATAAGAGTTAA back to top
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