rna9894, rna9894 (mRNA) Nannochloropsis gaditana

Overview
Namerna9894
Unique Namerna9894
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1015
Alignment locationKK037257.1:72343..73351 +

Link to JBrowse

Properties
Property NameValue
Productisochorismatase hydrolase
Orig transcript idgnl|cribi|Naga_101471g1.7265.mrna
Orig protein idgnl|cribi|Naga_101471g1.7265
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:72343..73351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101471g1gene9602Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9894rna9894-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20811.1cds9863Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9894 ID=rna9894|Name=rna9894|organism=Nannochloropsis gaditana|type=mRNA|length=1015bp
GTGCAGCGACTTTTTGACCTTGATGGCCGGCTTGGCGGAGGTGCTGGAGC
ACCCGCCCTCCGCCCCGCCCTCCCGCCCGACCTTCTCCTTGGGGGAAATG
GAAGCGATCACACGGGCGGTGGTGGAGGCGGTGGCGACCGAGGTCAGCGA
GCAGGCAGGTGGCGAGGGAGAGCGGGATGGAGGGCGGGACGGAGGGCGGG
GGGGAAGCGCCTTCCCAGCCGCGTCCCAACTGGTGAGGGTCCAATGCCCG
GAGCTCTCCGTGCTCTACGCCTGTCGTTTGACCTTGGCCTCCCTCATCAA
CACCTCGACGTCACGGGAAAATGGCGGGACCGATGCCCTGGCGCGAGCCT
TGCGACCGCTCTTGTCCACCCTCCCCCCCCTGGGCGGGGTGGCTCCCAAA
CGTCTCTGGCCGCCGTTGCTTCGAACCTGCCTCGCGCTCCTGCAGACGAT
AATGCGGGACCAAGAGAGCAATCCGGGGCCGGAGGTGCCCGCTCCTCCCC
TCTCTCCTGCACAGGCGGCGGCCCTCATGACCTGTATTGCCGAAGTCCAA
GTGACTCATCGGCGGGAGGAATTCTTGGGGTGGGAAGGGAAGGAAGGCTG
GAAGCAGACGCAGCGGCAGGTCTTGGCGGTGGCGCTGGCTCGGGCCTTTG
TCCAGGAGCGGAAGGAAGTGGTGGCCTGGGAGGAGAGGAAGGGGCAGGGA
GGAGGGGGAGGAGGAAAGGGAGGAGGGAGGGAGGGACAGAGGGCGGGGCG
GAGGGAGTCGGCGATGGAGTTGTTGAAGGGCCCGCCCATATTTTAACGTG
TGGGAGAGGAACGCGGAAAGGCGCCTTCCCAACGAAATATCTTCCATGTG
CACGAGTGTGCAAGAGGAATAGCCTGGCAAGGTAGCGGGCTGTCACGCAT
GGAGCCACGTGGCAGGCGGGTCGAGACACCATTCCACGTTCCCGCCTGCC
GCGCGCATCAATGCGTTGTTAATATCAAGCAATGGGACGGCGTCTTGTGT
CGACCAGGGGTTGGA
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protein sequence of rna9894

>rna9894-protein ID=rna9894-protein|Name=rna9894|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MPPIPSSAPSRTNTSSSLSIPAPLSGHVGREGLLVDLRNTILLLHPGDLP
FPVIQNISLLRAAWGKPINACKNEGENGNAGDVFSSSPTVLIVQGGTVTA
DCDEGQLFQPQVPCPALSRFIDAEASVFHTTNLGYILARLFAAMSTSARP
PSPPSRPLSLPPLHHLVIAGAKADTALESTVRDAADMGYIVTYVTDAVSG
SSAQRETRTAYVREGGREAGREGGREGGREGGRKVSAETSGKPS
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mRNA from alignment at KK037257.1:72343..73351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9894 ID=rna9894|Name=rna9894|organism=Nannochloropsis gaditana|type=mRNA|length=1009bp|location=Sequence derived from alignment at KK037257.1:72343..73351+ (Nannochloropsis gaditana)
ACGGCCCAATACAACCATTTTTACCACTCGGCGTTTTGGGGTCTGCATGC
GTTgacttcttttttttccatgGCACGGCAGAAGATGCGTGCACATACAT
CAAAAGGCGGTCCGTCGTCATGAAACACAACAAATTACTTATTGCCGCgt
taacctcctgccccctctatCTAGGCAATTTTACGGGAGAGGGCCGTACC
AACAGCCTAATATGCCGCCGATACCATCGTCAGCCCCGTCACGTAccaac
acctcctcctctttatcCATACCGGCCCCACTTTCCGGGCATGTTGGGCG
TGAAGGCCTTCTGGTTGATCTGCGCAACACGATCCTTCTCTTACATCCGG
GTGATCTCCCATTTCCAGTGATACAAAACATCTCCCTGTTACGTGCGGCA
TGGGGGAAACCAATAAACGCATGCAAAAACGAGGGCGAAAACGGAAATGC
TGGCGacgtcttttcttcctcacccACCGTGCTCATTGTGCAGGGAGGAA
CAGTGACCGCCGACTGCGACGAAGGGCAGCTCTTTCAGCCACAAGTCCCT
TGCCCTGCCCTCAGTCGCTTCATCGATGCCGAAGCCAGTGTGTTCCACAC
CACCAACCTCGGCTACATCCTCGCCCGGCTCTTCGCTGCCatgtccacct
ccgcccgccctccctcccctccctcccgccctctgtccctccctcccctc
catcacctcGTTATCGCCGGAGCGAAAGCGGATACGGCCTTGGAGAGCAC
CGTGCGAGATGCTGCAGATATGGGATACATAGTCACGTACGTCACAGACG
CAGTGAGTGGATCCTCCGCTCAacgggagacgaggacggcctatgtaagg
gagggcgggagggaagcagggagggagggagggagggagggagggaggga
gggggggaggaaggtatcGGCAGAGACATCAGGGAAGCCGTCATAAAACG
CGCGACAATGAGCTGGATGTTGGCCTTTACGCCTCACTTATCTTGTCATG
GACATTTTC
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Coding sequence (CDS) from alignment at KK037257.1:72343..73351+

>rna9894 ID=rna9894|Name=rna9894|organism=Nannochloropsis gaditana|type=CDS|length=735bp|location=Sequence derived from alignment at KK037257.1:72343..73351+ (Nannochloropsis gaditana)
ATGCCGCCGATACCATCGTCAGCCCCGTCACGTAccaacacctcctcctc
tttatcCATACCGGCCCCACTTTCCGGGCATGTTGGGCGTGAAGGCCTTC
TGGTTGATCTGCGCAACACGATCCTTCTCTTACATCCGGGTGATCTCCCA
TTTCCAGTGATACAAAACATCTCCCTGTTACGTGCGGCATGGGGGAAACC
AATAAACGCATGCAAAAACGAGGGCGAAAACGGAAATGCTGGCGacgtct
tttcttcctcacccACCGTGCTCATTGTGCAGGGAGGAACAGTGACCGCC
GACTGCGACGAAGGGCAGCTCTTTCAGCCACAAGTCCCTTGCCCTGCCCT
CAGTCGCTTCATCGATGCCGAAGCCAGTGTGTTCCACACCACCAACCTCG
GCTACATCCTCGCCCGGCTCTTCGCTGCCatgtccacctccgcccgccct
ccctcccctccctcccgccctctgtccctccctcccctccatcacctcGT
TATCGCCGGAGCGAAAGCGGATACGGCCTTGGAGAGCACCGTGCGAGATG
CTGCAGATATGGGATACATAGTCACGTACGTCACAGACGCAGTGAGTGGA
TCCTCCGCTCAacgggagacgaggacggcctatgtaagggagggcgggag
ggaagcagggagggagggagggagggagggagggagggagggggggagga
aggtatcGGCAGAGACATCAGGGAAGCCGTCATAA
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Synonyms
Publications