rna9892, rna9892 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9892
Unique Name	rna9892
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	551
Alignment location	KK037257.1:69896..70554 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101750g1.3188.mrna
Orig protein id	gnl\|cribi\|Naga_101750g1.3188
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:69896..70554 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101750g1	gene9600	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9892	rna9892-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20812.1	cds9861	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:69896..70554+
coding sequence from alignment at KK037257.1:69896..70554+

mRNA sequence

>rna9892 ID=rna9892|Name=rna9892|organism=Nannochloropsis gaditana|type=mRNA|length=551bp
GAAGAAGAAACCGCCGTGACAATTCTCAAGCTTGAGGACGGGGATAAGTG
CAGCAGCCAGAGGGAGGCAGCGGCTACAGGGAACCCAACTCTGATATAAT
CTGTTTGGCTGTCACCAGGTTCTTCGCGCTACGCTCAAAGGAAGCGGAAA
AATCACTTTGGAGCAGGGCATTCGCGTGTTCATCATAAATCTCTGTCGAA
TCACGCCGTGAGAAGCTCGTGTTGTGAATGTCGGTGACCGGGAAGGGCGG
GGTCGGTATCCCCATCATCTTATTGCACGATGCCGAGGGGGGCATCATCA
CAGTTGAAACCAGGACCGGCGAACTCTATCGCGGCCTGCTGGACGAAGCC
GAAGACAACATGAATTTAATCCTGAGGGACGTGACCAAAACCAACGTGCA
CGGCAAGGAGAGTAAAGTGGAGTTGATCTACATCAAGGGCTCCCAGGTAA
ATTTTATGATACTGCCCGACATGCTGAAAAAGGCGCCCATGTTCAAGCGC
ATCAAGGTACGAGCACAACGCTTTGCCTGAAATGGAGGGGAGGGGGAGAG
G

protein sequence of rna9892

>rna9892-protein ID=rna9892-protein|Name=rna9892|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MYDDAEMQVAPPDETEDTFPTSRSSLLAAEGQYLLSSLYATYRALFRHLP
VSVRPAGIDYLERVEGVSSPSLPLSRSGHRERCPALPSLSILRWASRRLR
RSIRRCLAHVDDVIDREARGDAVAALTAQVMSVAAMWGGRHDLSPSFPIP
LPPLLSILPPFLPPFPPSSLSSLSPALLASGEGK

mRNA from alignment at KK037257.1:69896..70554+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9892 ID=rna9892|Name=rna9892|organism=Nannochloropsis gaditana|type=mRNA|length=659bp|location=Sequence derived from alignment at KK037257.1:69896..70554+ (Nannochloropsis gaditana)
GACAAGCACTTCTCCGACTAATACATCACCTGTCAAATCTCCTACCATCA
ACGTATCATTGATACGCATTTTACCCATTTTCCTACATATAGGAAGTGAT
TGCGATGTACGACGATGCCGAGATGCAGGTGGCCCCTCCCGATGAGACCG
AAGACACGTTTCCCACTtcacgctcctccctcctcgccgcagAGGGGCAG
TACCTCCTCTCATCCTTGTATGCCACCTATCGTGCTCTCTTCCGCCACCT
ACCCGTCTCCGTCCGCCCTGCCGGCATCGACTACCTCGAGCGCGTCGAGG
GCGtttcctctccgtccctgcccctttcaCGGTCGGGGCACCGGGAgcgc
tgccccgccctcccttccctttccatcctgcgATGGGCATCCCGGCGCTT
GCGAAGAAGCATCCGCAGGTGTTTGGCCCACGTCGATGACGTCATCGACC
GGGAGGCACGGGGAGATGCCGTGGCAGCGTTAACCGCGCAGGTGATGAGT
GTGGCGGCgatgtggggagggagacatgatctctctccttcctttcctat
ccccctccctcctctcctttcgatcctccctcctttccttcctcccttcc
ccccctcttctctttcttccttaAGCCCAGCCTTGTTGGCAAGTGGCGAA
GGGAAGTAA

Coding sequence (CDS) from alignment at KK037257.1:69896..70554+

>rna9892 ID=rna9892|Name=rna9892|organism=Nannochloropsis gaditana|type=CDS|length=555bp|location=Sequence derived from alignment at KK037257.1:69896..70554+ (Nannochloropsis gaditana)
ATGTACGACGATGCCGAGATGCAGGTGGCCCCTCCCGATGAGACCGAAGA
CACGTTTCCCACTtcacgctcctccctcctcgccgcagAGGGGCAGTACC
TCCTCTCATCCTTGTATGCCACCTATCGTGCTCTCTTCCGCCACCTACCC
GTCTCCGTCCGCCCTGCCGGCATCGACTACCTCGAGCGCGTCGAGGGCGt
ttcctctccgtccctgcccctttcaCGGTCGGGGCACCGGGAgcgctgcc
ccgccctcccttccctttccatcctgcgATGGGCATCCCGGCGCTTGCGA
AGAAGCATCCGCAGGTGTTTGGCCCACGTCGATGACGTCATCGACCGGGA
GGCACGGGGAGATGCCGTGGCAGCGTTAACCGCGCAGGTGATGAGTGTGG
CGGCgatgtggggagggagacatgatctctctccttcctttcctatcccc
ctccctcctctcctttcgatcctccctcctttccttcctcccttcccccc
ctcttctctttcttccttaAGCCCAGCCTTGTTGGCAAGTGGCGAAGGGA
AGTAA

Synonyms

Publications