EWM20812.1, cds9861 (CDS) Nannochloropsis gaditana

Overview
NameEWM20812.1
Unique Namecds9861
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:70000..70554 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20812.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101750g1.3188.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:70000..70554 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20812.1 vs. NCBI_GenBank
Match: gi|585100725|gb|EWM20812.1| (hypothetical protein Naga_101750g1 [Nannochloropsis gaditana])

HSP 1 Score: 359.762 bits (922), Expect = 1.655e-125
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 MYDDAEMQVAPPDETEDTFPTSRSSLLAAEGQYLLSSLYATYRALFRHLPVSVRPAGIDYLERVEGVSSPSLPLSRSGHRERCPALPSLSILRWASRRLRRSIRRCLAHVDDVIDREARGDAVAALTAQVMSVAAMWGGRHDLSPSFPIPLPPLLSILPPFLPPFPPSSLSSLSPALLASGEGK 184
            MYDDAEMQVAPPDETEDTFPTSRSSLLAAEGQYLLSSLYATYRALFRHLPVSVRPAGIDYLERVEGVSSPSLPLSRSGHRERCPALPSLSILRWASRRLRRSIRRCLAHVDDVIDREARGDAVAALTAQVMSVAAMWGGRHDLSPSFPIPLPPLLSILPPFLPPFPPSSLSSLSPALLASGEGK
Sbjct:    1 MYDDAEMQVAPPDETEDTFPTSRSSLLAAEGQYLLSSLYATYRALFRHLPVSVRPAGIDYLERVEGVSSPSLPLSRSGHRERCPALPSLSILRWASRRLRRSIRRCLAHVDDVIDREARGDAVAALTAQVMSVAAMWGGRHDLSPSFPIPLPPLLSILPPFLPPFPPSSLSSLSPALLASGEGK 184
[Close]
BLAST of EWM20812.1 vs. NCBI_GenBank
Match: gi|553191834|ref|XP_005855467.1| (hypothetical protein NGA_0139700 [Nannochloropsis gaditana CCMP526] >gi|422293596|gb|EKU20896.1| hypothetical protein NGA_0139700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 259.225 bits (661), Expect = 7.443e-86
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 
Query:    1 MYDDAEMQVAPPDETEDTFPTSRSSLLAAEGQYLLSSLYATYRALFRHLPVSVRPAGIDYLERVEGVSSPSLPLSRSGHRERCPALPSLSILRWASRRLRRSIRRCLAHVDDVIDREARGDAVAALTAQ 129
            MYDDAEMQVAPPDETEDTFPTSRSSLLAAEGQYLLSSLYATYRALFRHLPVSVRPAGIDYLERVEGVSSPSLPLSRSGHRERCPALPSLSILRWASRRLRRSIRRCLAHVDDVIDREARGDAVAALTAQ
Sbjct:    1 MYDDAEMQVAPPDETEDTFPTSRSSLLAAEGQYLLSSLYATYRALFRHLPVSVRPAGIDYLERVEGVSSPSLPLSRSGHRERCPALPSLSILRWASRRLRRSIRRCLAHVDDVIDREARGDAVAALTAQ 129
The following BLAST results are available for this feature:
BLAST of EWM20812.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100725|gb|EWM20812.1|1.655e-125100.00hypothetical protein Naga_101750g1 [Nannochloropsi... [more]
gi|553191834|ref|XP_005855467.1|7.443e-86100.00hypothetical protein NGA_0139700 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9892rna9892Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications