EWM20813.1, cds9860 (CDS) Nannochloropsis gaditana

Overview
NameEWM20813.1
Unique Namecds9860
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:67431..67490 +
Alignment locationKK037257.1:67704..67862 +
Alignment locationKK037257.1:68222..68305 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20813.1
Productsmall nuclear ribonucleoprotein
Orig transcript idgnl|cribi|Naga_101532g2.42.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:67431..67490 +
KK037257.1supercontigKK037257.1:67704..67862 +
KK037257.1supercontigKK037257.1:68222..68305 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027141LSm4/Sm_D1/D3
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|585100728|gb|EWM20813.1| (small nuclear ribonucleoprotein [Nannochloropsis gaditana])

HSP 1 Score: 202.986 bits (515), Expect = 3.174e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVRAQRFA 100
            MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVRAQRFA
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVRAQRFA 100          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|675169593|ref|XP_008893681.1| (hypothetical protein PPTG_02041 [Phytophthora parasitica INRA-310] >gi|566021747|gb|ETI44658.1| hypothetical protein F443_10649 [Phytophthora parasitica P1569] >gi|567959063|gb|ETK84643.1| hypothetical protein L915_10409 [Phytophthora parasitica] >gi|567987784|gb|ETL38079.1| hypothetical protein L916_10303 [Phytophthora parasitica] >gi|568017005|gb|ETL91182.1| hypothetical protein L917_10241 [Phytophthora parasitica] >gi|568047428|gb|ETM44509.1| hypothetical protein L914_10271 [Phytophthora parasitica] >gi|568107347|gb|ETN21977.1| hypothetical protein PPTG_02041 [Phytophthora parasitica INRA-310] >gi|570325360|gb|ETO73308.1| hypothetical protein F444_10749 [Phytophthora parasitica P1976] >gi|570949211|gb|ETP14468.1| hypothetical protein F441_10589 [Phytophthora parasitica CJ01A1] >gi|570982421|gb|ETP42549.1| hypothetical protein F442_10549 [Phytophthora parasitica P10297])

HSP 1 Score: 134.035 bits (336), Expect = 1.866e-38
Identity = 57/94 (60.64%), Postives = 78/94 (82.98%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
            M+VTGK GVGIP ILLHD EG I+++E +TGE YRGLLDE EDNMN +++D  +T+++G  S+VE +Y++GSQ+ F++ PDMLK APMFKR+K+
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDMLKHAPMFKRVKM 94          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|1173940819|gb|OQR90133.1| (hypothetical protein THRCLA_22585 [Thraustotheca clavata])

HSP 1 Score: 129.028 bits (323), Expect = 1.909e-36
Identity = 55/94 (58.51%), Postives = 75/94 (79.79%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
            M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D  +T++ G+++  + +Y++GSQ+ F+I PDMLK AP FKR+K+
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGQQTHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKL 94          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|325182649|emb|CCA17104.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 128.257 bits (321), Expect = 4.202e-36
Identity = 53/94 (56.38%), Postives = 77/94 (81.91%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
            M+VTGK GVGIP ILLHD EG  +++E ++GE+YRG L+E EDNMN +L++  +T+++G  + VEL+Y++GSQ+ F++ PDMLK APMFKR+K+
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKL 94          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|813158073|ref|XP_012202385.1| (hypothetical protein SPRG_07720 [Saprolegnia parasitica CBS 223.65] >gi|641533001|gb|KDO27008.1| hypothetical protein SPRG_07720 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 128.257 bits (321), Expect = 4.523e-36
Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
            M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D  +T++ G +S  + +Y++GSQ+ F+I PDMLK AP FKR+K+
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKL 94          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|669166800|ref|XP_008618962.1| (small nuclear ribonucleoprotein D3 [Saprolegnia diclina VS20] >gi|530729300|gb|EQC27542.1| small nuclear ribonucleoprotein D3 [Saprolegnia diclina VS20])

HSP 1 Score: 127.487 bits (319), Expect = 7.988e-36
Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
            M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D  +T++ G +S  + +Y++GSQ+ F+I PDMLK AP FKR+K+
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDLRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKL 94          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|813232778|ref|XP_012213179.1| (hypothetical protein SPRG_18352, partial [Saprolegnia parasitica CBS 223.65] >gi|641519276|gb|KDO16114.1| hypothetical protein SPRG_18352, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 125.946 bits (315), Expect = 8.626e-36
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKR 91
            M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D  +T++ G +S  + +Y++GSQ+ F+I PDMLK AP FKR
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKR 91          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|673045007|ref|XP_008876464.1| (hypothetical protein H310_11530 [Aphanomyces invadans] >gi|574467852|gb|ETV94873.1| hypothetical protein H310_11530 [Aphanomyces invadans])

HSP 1 Score: 126.716 bits (317), Expect = 1.681e-35
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
            M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D  +T+V G  +  E +Y++GSQ+ F++LPDMLK AP FKR+K+
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVEMKNGDLYRGYLDETEDNMNCLLKDAIRTDVRGITTHCEHVYLRGSQIVFIVLPDMLKHAPFFKRVKL 94          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|1173944469|gb|OQR93203.1| (hypothetical protein ACHHYP_02804 [Achlya hypogyna])

HSP 1 Score: 126.331 bits (316), Expect = 2.334e-35
Identity = 54/94 (57.45%), Postives = 74/94 (78.72%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
            M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D  +T++ G ++  + +Y++GSQ+ F++ PDMLK AP FKR+K+
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGMQTHCDQVYLRGSQILFIVFPDMLKHAPFFKRVKL 94          
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|698807784|ref|XP_009836921.1| (hypothetical protein H257_11619 [Aphanomyces astaci] >gi|574107986|gb|ETV73495.1| hypothetical protein H257_11619 [Aphanomyces astaci])

HSP 1 Score: 125.946 bits (315), Expect = 3.135e-35
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 0
Query:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94
            M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D  +T+V G  +  E +Y++GSQ+ F++ PDMLK AP FKR+K+
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVEMKNGDLYRGYLDETEDNMNCLLKDAIRTDVRGITTHCEHVYLRGSQIVFIVFPDMLKHAPFFKRVKL 94          
The following BLAST results are available for this feature:
BLAST of EWM20813.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100728|gb|EWM20813.1|3.174e-66100.00small nuclear ribonucleoprotein [Nannochloropsis g... [more]
gi|675169593|ref|XP_008893681.1|1.866e-3860.64hypothetical protein PPTG_02041 [Phytophthora para... [more]
gi|1173940819|gb|OQR90133.1|1.909e-3658.51hypothetical protein THRCLA_22585 [Thraustotheca c... [more]
gi|325182649|emb|CCA17104.1|4.202e-3656.38conserved hypothetical protein [Albugo laibachii N... [more]
gi|813158073|ref|XP_012202385.1|4.523e-3659.57hypothetical protein SPRG_07720 [Saprolegnia paras... [more]
gi|669166800|ref|XP_008618962.1|7.988e-3659.57small nuclear ribonucleoprotein D3 [Saprolegnia di... [more]
gi|813232778|ref|XP_012213179.1|8.626e-3660.44hypothetical protein SPRG_18352, partial [Saproleg... [more]
gi|673045007|ref|XP_008876464.1|1.681e-3560.64hypothetical protein H310_11530 [Aphanomyces invad... [more]
gi|1173944469|gb|OQR93203.1|2.334e-3557.45hypothetical protein ACHHYP_02804 [Achlya hypogyna... [more]
gi|698807784|ref|XP_009836921.1|3.135e-3559.57hypothetical protein H257_11619 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9891rna9891Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications