EWM20813.1, cds9860 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|585100728|gb|EWM20813.1| (small nuclear ribonucleoprotein [Nannochloropsis gaditana]) HSP 1 Score: 202.986 bits (515), Expect = 3.174e-66 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVRAQRFA 100 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVRAQRFA Sbjct: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVRAQRFA 100
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|675169593|ref|XP_008893681.1| (hypothetical protein PPTG_02041 [Phytophthora parasitica INRA-310] >gi|566021747|gb|ETI44658.1| hypothetical protein F443_10649 [Phytophthora parasitica P1569] >gi|567959063|gb|ETK84643.1| hypothetical protein L915_10409 [Phytophthora parasitica] >gi|567987784|gb|ETL38079.1| hypothetical protein L916_10303 [Phytophthora parasitica] >gi|568017005|gb|ETL91182.1| hypothetical protein L917_10241 [Phytophthora parasitica] >gi|568047428|gb|ETM44509.1| hypothetical protein L914_10271 [Phytophthora parasitica] >gi|568107347|gb|ETN21977.1| hypothetical protein PPTG_02041 [Phytophthora parasitica INRA-310] >gi|570325360|gb|ETO73308.1| hypothetical protein F444_10749 [Phytophthora parasitica P1976] >gi|570949211|gb|ETP14468.1| hypothetical protein F441_10589 [Phytophthora parasitica CJ01A1] >gi|570982421|gb|ETP42549.1| hypothetical protein F442_10549 [Phytophthora parasitica P10297]) HSP 1 Score: 134.035 bits (336), Expect = 1.866e-38 Identity = 57/94 (60.64%), Postives = 78/94 (82.98%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94 M+VTGK GVGIP ILLHD EG I+++E +TGE YRGLLDE EDNMN +++D +T+++G S+VE +Y++GSQ+ F++ PDMLK APMFKR+K+ Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDMLKHAPMFKRVKM 94
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|1173940819|gb|OQR90133.1| (hypothetical protein THRCLA_22585 [Thraustotheca clavata]) HSP 1 Score: 129.028 bits (323), Expect = 1.909e-36 Identity = 55/94 (58.51%), Postives = 75/94 (79.79%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94 M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D +T++ G+++ + +Y++GSQ+ F+I PDMLK AP FKR+K+ Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGQQTHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKL 94
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|325182649|emb|CCA17104.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 128.257 bits (321), Expect = 4.202e-36 Identity = 53/94 (56.38%), Postives = 77/94 (81.91%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94 M+VTGK GVGIP ILLHD EG +++E ++GE+YRG L+E EDNMN +L++ +T+++G + VEL+Y++GSQ+ F++ PDMLK APMFKR+K+ Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKL 94
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|813158073|ref|XP_012202385.1| (hypothetical protein SPRG_07720 [Saprolegnia parasitica CBS 223.65] >gi|641533001|gb|KDO27008.1| hypothetical protein SPRG_07720 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 128.257 bits (321), Expect = 4.523e-36 Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94 M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D +T++ G +S + +Y++GSQ+ F+I PDMLK AP FKR+K+ Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKL 94
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|669166800|ref|XP_008618962.1| (small nuclear ribonucleoprotein D3 [Saprolegnia diclina VS20] >gi|530729300|gb|EQC27542.1| small nuclear ribonucleoprotein D3 [Saprolegnia diclina VS20]) HSP 1 Score: 127.487 bits (319), Expect = 7.988e-36 Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94 M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D +T++ G +S + +Y++GSQ+ F+I PDMLK AP FKR+K+ Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDLRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKRVKL 94
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|813232778|ref|XP_012213179.1| (hypothetical protein SPRG_18352, partial [Saprolegnia parasitica CBS 223.65] >gi|641519276|gb|KDO16114.1| hypothetical protein SPRG_18352, partial [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 125.946 bits (315), Expect = 8.626e-36 Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKR 91 M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D +T++ G +S + +Y++GSQ+ F+I PDMLK AP FKR Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGMQSHCDQVYLRGSQILFIIFPDMLKHAPFFKR 91
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|673045007|ref|XP_008876464.1| (hypothetical protein H310_11530 [Aphanomyces invadans] >gi|574467852|gb|ETV94873.1| hypothetical protein H310_11530 [Aphanomyces invadans]) HSP 1 Score: 126.716 bits (317), Expect = 1.681e-35 Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94 M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D +T+V G + E +Y++GSQ+ F++LPDMLK AP FKR+K+ Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVTVEMKNGDLYRGYLDETEDNMNCLLKDAIRTDVRGITTHCEHVYLRGSQIVFIVLPDMLKHAPFFKRVKL 94
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|1173944469|gb|OQR93203.1| (hypothetical protein ACHHYP_02804 [Achlya hypogyna]) HSP 1 Score: 126.331 bits (316), Expect = 2.334e-35 Identity = 54/94 (57.45%), Postives = 74/94 (78.72%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94 M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D +T++ G ++ + +Y++GSQ+ F++ PDMLK AP FKR+K+ Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLKDAYRTDIRGMQTHCDQVYLRGSQILFIVFPDMLKHAPFFKRVKL 94
BLAST of EWM20813.1 vs. NCBI_GenBank
Match: gi|698807784|ref|XP_009836921.1| (hypothetical protein H257_11619 [Aphanomyces astaci] >gi|574107986|gb|ETV73495.1| hypothetical protein H257_11619 [Aphanomyces astaci]) HSP 1 Score: 125.946 bits (315), Expect = 3.135e-35 Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 0 Query: 1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKV 94 M+VTGK GVGIP ILLHD EG I+TVE + G+LYRG LDE EDNMN +L+D +T+V G + E +Y++GSQ+ F++ PDMLK AP FKR+K+ Sbjct: 1 MAVTGKRGVGIPTILLHDGEGTIVTVEMKNGDLYRGYLDETEDNMNCLLKDAIRTDVRGITTHCEHVYLRGSQIVFIVFPDMLKHAPFFKRVKL 94 The following BLAST results are available for this feature:
BLAST of EWM20813.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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