rna9880, rna9880 (mRNA) Nannochloropsis gaditana

Overview
Namerna9880
Unique Namerna9880
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1201
Alignment locationKK037257.1:44541..45458 +

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Properties
Property NameValue
Productglutamate 1-semialdehyde aminotransferase
Orig transcript idgnl|cribi|Naga_100835g1.4730.mrna
Orig protein idgnl|cribi|Naga_100835g1.4730
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:44541..45458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100835g1gene9589Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9880rna9880-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20822.1cds9849Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9880 ID=rna9880|Name=rna9880|organism=Nannochloropsis gaditana|type=mRNA|length=1201bp
AAGGCCAAAAATACGGTAAAAAAAACACAAAATTGACAAAAAGTCACCCG
ACTTCTCCAAAACCTGGCCAACCAGGGTGGTCGTCGGCTGGTAAGAGGAT
CGCACACCTTTTAAAGGCGTGTGTGCGTGCGTGCAGGTCGGATAGTGCCT
ACGGGTTTGGCTGGTGGTTTTAATTTGTGGGCTTCAGCGTCCTTTTTCTG
CTTACACCCACCGCGATTCCGCTATGTCTTGCCAGGCCCGCCATCGTCCC
TCCTCCTGGTCCATGTGGAGACTACATGCAGGGTGCACTGTGAGGAAGTA
ATCGTGCTTGTGCACGCCGGTGACAATGGAGATCGTGCCCTTGTAGTTGT
GTTTTTGGGCCACTTAATGCTTGTTGTCTGCTCGTGCCTCCTTTGTTGCC
CTAATGCAGTATAACCTTCCCCTCTACAGCCTTCACGTCAACGCCGGAGA
AGGAACACCTTCAAACCCTAGACGCACGACAGTAGAAACCTTGAATACAT
GGCGGAAGAAGCGAAAGGCGCGGTGGGGATGGACGAGGATCGCCCCGTCC
CTCATGGAGGAGGCGCCGAAGAGGGCAGTGGGCTAGGCGGTAGCACCAGC
GGGTCCACCTCTGGGGCAGCAGCCCCTCGCTTCGAGATTAAGAAATGGAA
CGCTGTCACCATGTGGTCCTGGGATATCTGCGCCGACACCTGTGCCATTT
GTAGAAATAATCTGAACGAGCCCTCCATCGAATACCAGGCCAACCCGTCT
CCCAACAATGAAAATGGACTTTCCATCGCTTTCGGTTGCTGCTCCCACGT
CTTCCATCTCGATTGCATCCAGCGCTGGTTGAAAGCTCGCTCAGTCTGTC
CGTTGTGCAATAAAGAGTGGGAATTTAGCAAGATTGAGCGCATTCCGGGA
TACAATGCCTTGGGTATATAATGGTCTCGAGTAGGTCCTCCCCCATCCGG
CACTCTCTGTGGTTTCTTGACTACCCCTTGGAGTGTGATCCTTGAATATA
CCTTGCTTGATGTGGGGAGACTGGCGGGTAAATACTCATGAATTTGGGGG
AGAACCAAGCCAGGTTTTGAGCAAAGTCGATAAACGGTTTCTCAAACGTG
TGAAATGGATGGGAATAGCTAAGGCATACCTGTGTAAGTCTATGAAAATG
CGTAAAGTGATAACATACAAAGAAAAATAGAAAGAAACGCAGCATATTTT
C
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protein sequence of rna9880

>rna9880-protein ID=rna9880-protein|Name=rna9880|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
PPSFPPSLRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSD
TVRQTPSCPSSFLSLVRAFSEEGSPPTVHLYQPAFEQLLSLLVFCLPPWH
ILVAPSLLLGLGLRFPPSPPTFDLPAARPVDAGSLSDPKPSLTLPP
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mRNA from alignment at KK037257.1:44541..45458+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9880 ID=rna9880|Name=rna9880|organism=Nannochloropsis gaditana|type=mRNA|length=918bp|location=Sequence derived from alignment at KK037257.1:44541..45458+ (Nannochloropsis gaditana)
cctccctccttccctccctccctccgcagcATCCtcaaggaaggcaaggc
ggCCGGCCACGCGATTTGTGGGGGCCATGTGAGCGGCATGTTCGGTTTCT
TCTTCACGGAAGGGCCAGTCCGCTGCTTCGCCGACGCGGCCAAGAGCGAC
ACGGTACGACAAACACCATCCTGTCCGTCGTCCTTTCTTTCGTTGGTTCG
CGCATTTTCTGAGGAAGGGAGTCCCCCGACAGTGCACCTTTACCAACCCG
CATTCGAACAattgctgtccctccttgtgtTTTGTCTTCCGCCTTGGCAT
ATCCTGGTCGCACCGAGCTtgctgttagggttaggcttgcgtttccctcc
ctctccgccaaCTTTCGACCTTCCCGCCGCCCGTCCAGTGGATGCGGGCA
GTCTCTCCGATCCCAAACCCTccctgaccctccctccctgaccctcccac
cctccctccctccctcgaccctccctccctccctccctcaggccaaATTC
GCCAAGTGGCACCGGGGGATGCTCGAGCACGGTGTTTATCTGGCGCCCTC
CCAGTACGAGGCCGGATTCATGTCTTTGGCACATACCGAGGCGGATATCG
ACGCTACCATCGCGGCGGCGAAAGAGGTGTTCAAGACGTTGTAAAGCGGG
CGTAGGGCcgcgaggaaagcgaggcgaggaggggggttggaggagagaaa
tgAGGCCGggtagggggaggatggaggggaagatatCGAAAGAGCgaaag
tgagggagggaggggaagaaagccaGGATCGAAGGCGAGAGGCGGGGACA
GAAGGGTCAAATATTGGTGTAAGGGCTGTCATGATGGTACCTTAACTTTC
ATCCGTTGCCGAGCGCGGGAAAAGAAACACTGCACCCACATTTGAAGACA
TGCCAGTCTGGCTTTACA
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Coding sequence (CDS) from alignment at KK037257.1:44541..45458+

>rna9880 ID=rna9880|Name=rna9880|organism=Nannochloropsis gaditana|type=CDS|length=441bp|location=Sequence derived from alignment at KK037257.1:44541..45458+ (Nannochloropsis gaditana)
cctccctccttccctccctccctccgcagcATCCtcaaggaaggcaaggc
ggCCGGCCACGCGATTTGTGGGGGCCATGTGAGCGGCATGTTCGGTTTCT
TCTTCACGGAAGGGCCAGTCCGCTGCTTCGCCGACGCGGCCAAGAGCGAC
ACGGTACGACAAACACCATCCTGTCCGTCGTCCTTTCTTTCGTTGGTTCG
CGCATTTTCTGAGGAAGGGAGTCCCCCGACAGTGCACCTTTACCAACCCG
CATTCGAACAattgctgtccctccttgtgtTTTGTCTTCCGCCTTGGCAT
ATCCTGGTCGCACCGAGCTtgctgttagggttaggcttgcgtttccctcc
ctctccgccaaCTTTCGACCTTCCCGCCGCCCGTCCAGTGGATGCGGGCA
GTCTCTCCGATCCCAAACCCTccctgaccctccctccctga
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Synonyms
Publications