EWM20822.1, cds9849 (CDS) Nannochloropsis gaditana

Overview
NameEWM20822.1
Unique Namecds9849
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:44541..44981 +

Link to JBrowse

Properties
Property NameValue
Start range44541
Start range.
Protein idEWM20822.1
Productglutamate 1-semialdehyde aminotransferase
Partialtrue
Orig transcript idgnl|cribi|Naga_100835g1.4730.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:44541..44981 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|585100744|gb|EWM20822.1| (glutamate 1-semialdehyde aminotransferase, partial [Nannochloropsis gaditana])

HSP 1 Score: 284.648 bits (727), Expect = 4.671e-97
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 PPSFPPSLRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVRQTPSCPSSFLSLVRAFSEEGSPPTVHLYQPAFEQLLSLLVFCLPPWHILVAPSLLLGLGLRFPPSPPTFDLPAARPVDAGSLSDPKPSLTLPP 146
            PPSFPPSLRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVRQTPSCPSSFLSLVRAFSEEGSPPTVHLYQPAFEQLLSLLVFCLPPWHILVAPSLLLGLGLRFPPSPPTFDLPAARPVDAGSLSDPKPSLTLPP
Sbjct:    1 PPSFPPSLRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVRQTPSCPSSFLSLVRAFSEEGSPPTVHLYQPAFEQLLSLLVFCLPPWHILVAPSLLLGLGLRFPPSPPTFDLPAARPVDAGSLSDPKPSLTLPP 146          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|1012113351|ref|XP_015960527.1| (glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Arachis duranensis])

HSP 1 Score: 78.9518 bits (193), Expect = 1.862e-16
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    8 LRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVR 53
            +R I++ GK AGHAICGGH+SGMFGFFFTEGPV  FADA KSDT +
Sbjct:    9 VRGIVEAGKKAGHAICGGHISGMFGFFFTEGPVYNFADAKKSDTAK 54          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|551558658|ref|XP_005766304.1| (glutamate 1-semialdehyde 2,1-aminomutase [Emiliania huxleyi CCMP1516] >gi|485616545|gb|EOD13875.1| glutamate 1-semialdehyde 2,1-aminomutase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 84.3445 bits (207), Expect = 2.761e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    8 LRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVR 53
            +  IL  GKAAGHA+CGGH+SGMFGFFFT+GPV+CFADAAKSDT +
Sbjct:  366 INGILDAGKAAGHAVCGGHISGMFGFFFTDGPVKCFADAAKSDTAK 411          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|32307578|gb|AAP79194.1| (glutamate 1-semialdehyde 2,1-aminomutase [Bigelowiella natans])

HSP 1 Score: 80.1073 bits (196), Expect = 1.027e-14
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0
Query:    8 LRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDT 51
            +  IL+ GKAAGH++CGGH+SGMFGFFFTEGPV CFADA KSDT
Sbjct:  416 INGILEAGKAAGHSLCGGHISGMFGFFFTEGPVNCFADATKSDT 459          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|1150087289|ref|XP_020229277.1| (glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Cajanus cajan] >gi|1012342372|gb|KYP53566.1| hypothetical protein KK1_024459 [Cajanus cajan])

HSP 1 Score: 78.1814 bits (191), Expect = 4.227e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    8 LRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVR 53
            ++ I++ GK AGHAICGGH+SGMFGFFFTEGPV  FADA KSDT +
Sbjct:  376 IQGIIEAGKRAGHAICGGHISGMFGFFFTEGPVYNFADAKKSDTAK 421          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|145356284|ref|XP_001422363.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144582605|gb|ABP00680.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 78.1814 bits (191), Expect = 4.659e-14
Identity = 43/81 (53.09%), Postives = 49/81 (60.49%), Query Frame = 0
Query:    8 LRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVRQTPSCPSSFLSLVRAFSEEGSPPTVHLYQPAFEQL 88
            +  ILK GK  GHA+CGGH+SGMFGFFFTEGPV+ FADAAKSDT +        F    RA  EEG       Y+  F  L
Sbjct:  376 IEGILKAGKDNGHAVCGGHISGMFGFFFTEGPVKNFADAAKSDTEK--------FGRWHRAMLEEGVYLAPSQYEAGFMSL 448          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|922854501|gb|KOO23030.1| (glutamate-1-semialdehyde -aminomutase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 77.7962 bits (190), Expect = 6.027e-14
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0
Query:   11 ILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDT 51
            IL  GKAAGHA+ GGH+SGMFGFFF EGPV+CFADAAKSDT
Sbjct:  375 ILAAGKAAGHAVTGGHISGMFGFFFCEGPVKCFADAAKSDT 415          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|1199289777|gb|OUS44882.1| (pyridoxal phosphate-dependent transferase [Ostreococcus tauri])

HSP 1 Score: 77.0258 bits (188), Expect = 9.325e-14
Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 0
Query:    8 LRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVRQTPSCPSSFLSLVRAFSEEGSPPTVHLYQPAFE 86
            +  ILK G+  GHA+CGGH+SGMFGFFFTEGPV+ F DAAKSDT +        F    RA  EEG    V+L    FE
Sbjct:  364 IEGILKAGRDNGHAVCGGHISGMFGFFFTEGPVKNFTDAAKSDTAK--------FGRWHRAMLEEG----VYLAPSQFE 430          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|217074220|gb|ACJ85470.1| (unknown [Medicago truncatula])

HSP 1 Score: 74.3294 bits (181), Expect = 9.582e-14
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    8 LRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVR 53
            ++ I++ GK AGHAICGGH++GMFGFFFTEGPV  F DA KSDT +
Sbjct:   93 VQGIVEAGKRAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSDTAK 138          
BLAST of EWM20822.1 vs. NCBI_GenBank
Match: gi|693495993|emb|CEG00814.1| (Tetrapyrrole biosynthesis,glutamate-1-semialdehyde aminotransferase [Ostreococcus tauri])

HSP 1 Score: 77.0258 bits (188), Expect = 9.643e-14
Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 0
Query:    8 LRSILKEGKAAGHAICGGHVSGMFGFFFTEGPVRCFADAAKSDTVRQTPSCPSSFLSLVRAFSEEGSPPTVHLYQPAFE 86
            +  ILK G+  GHA+CGGH+SGMFGFFFTEGPV+ F DAAKSDT +        F    RA  EEG    V+L    FE
Sbjct:  367 IEGILKAGRDNGHAVCGGHISGMFGFFFTEGPVKNFTDAAKSDTAK--------FGRWHRAMLEEG----VYLAPSQFE 433          
The following BLAST results are available for this feature:
BLAST of EWM20822.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100744|gb|EWM20822.1|4.671e-97100.00glutamate 1-semialdehyde aminotransferase, partial... [more]
gi|1012113351|ref|XP_015960527.1|1.862e-1673.91glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
gi|551558658|ref|XP_005766304.1|2.761e-1676.09glutamate 1-semialdehyde 2,1-aminomutase [Emiliani... [more]
gi|32307578|gb|AAP79194.1|1.027e-1477.27glutamate 1-semialdehyde 2,1-aminomutase [Bigelowi... [more]
gi|1150087289|ref|XP_020229277.1|4.227e-1471.74glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
gi|145356284|ref|XP_001422363.1|4.659e-1453.09predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|922854501|gb|KOO23030.1|6.027e-1482.93glutamate-1-semialdehyde -aminomutase [Chrysochrom... [more]
gi|1199289777|gb|OUS44882.1|9.325e-1453.16pyridoxal phosphate-dependent transferase [Ostreoc... [more]
gi|217074220|gb|ACJ85470.1|9.582e-1467.39unknown [Medicago truncatula][more]
gi|693495993|emb|CEG00814.1|9.643e-1453.16Tetrapyrrole biosynthesis,glutamate-1-semialdehyde... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9880rna9880Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications