rna9855, rna9855 (mRNA) Nannochloropsis gaditana

Overview
Namerna9855
Unique Namerna9855
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1089
Alignment locationKK037256.1:270177..272198 +

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Properties
Property NameValue
ProductCyclin-like protein
Orig transcript idgnl|cribi|Naga_100514g4.5675.mrna
Orig protein idgnl|cribi|Naga_100514g4.5675
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:270177..272198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100514g4gene9567Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9855rna9855-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20851.1cds9824Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9855 ID=rna9855|Name=rna9855|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp
CCACGCAAAATGGGGACGAGATTATCCAGACTTGGGCAGAAGACGAATCG
CTTACCTCGCATTAAACACCAAGCGCCTTGCACACCCTTTTTTACCTCCT
TTCTTTTCCTAGGCAGCCCGTTTATAGGATTCGGAATGCCTCGCAAGGCA
TGGCCCCAGGCTTTTGGTCGGTCATTTTGCGAACGCTAAGTGCATGTACA
CGCACGGAAAATGCGCTTTGACAGTCAATATTCGCACCGATTATGTATTC
ATGAGTTCTTTCAACAATATTATGCCTTAGGGGTGCCGTAGGGGCGGAGC
AGGGTAAAGTGACTGTGGCTGATACCCAGAGGCCTCCAGACTAGTAGCCC
TGATGGCGCTTGAGGCCTGTTCTGGCATTCTTTCCTCCGCATCTACAGCA
TTTCGAGAAGCAAGCTCCACGACCCCGGGATGGATCGTCTTTCTCTCATT
TGGTGCAGGGGCGCTTGTCAGCAGCTTTCTACCAAGCATGCGAAAGACGG
GAAGAAGAAAAAGAGGCCGGCAGTGGCCCTCAGAGGCCTTGGAGGAGGAA
GCGGACGAAGGCAGTGACAGCGAGAGAAGCGACACAGAGGAGTCTGCTGA
TGGAATCACCAGTGCTAAGACGATTCGGGATTTTTCTCTGGTATCTGGCC
CATTCAAAATGGTATTGTGTGTGAACATGGAGCTTTCGATGGGCAAAGGC
AAGATCGCCGCTCAGTGCGGGCACGCGACGTTGGGAGCGTACAAACGGGC
ACGTCGACTGGCTCCCAGGACTCTGCAAGGGTGGGAATACATGGGTCAGG
CAAAAATCTGCCTCAAAGTCCCCGATCAGGTGGAGCTGGAGCGGCTCCGT
GTCCTGGTTACTAAGGCGCAGTTGATCTCCTATCAGGTCGAAGACGCTGG
CCGGACGCAGATTGCAGCCGGCTCTCAGACAGTTTTGGCCATCGGACCCG
CCCCCGTCCAAGAAATCGACCGCATCACGGGGCACCTCAAACTGTTGTAG
GCCACGCTTTCTGCTCTTGTCAAGGGAAAGGAAAGCCATAAATCGAGGGC
AGGGATGACCAAATCAAGCATGGCGTCGGTCGCGTACCT
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protein sequence of rna9855

>rna9855-protein ID=rna9855-protein|Name=rna9855|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MKMGESNRSIKRHSVRLRSMQSAGTADVTHEGGKDPFESTLSPRSKTRRR
QGSCAAFSRAFPPSVVLGAVLHLLLPSGARSLSSPEYPSFPPSSGSFPSS
SAHEYISPSFPSPEPPLPQAGHHPPYLPPRPPPFALPSPPSPSGPIAAFL
RTLPEKDPAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRP
SLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYPSSLTVHRLLLAA
VMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPP
HQLFAYGTKALQYKKLPVFRQESP
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mRNA from alignment at KK037256.1:270177..272198+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9855 ID=rna9855|Name=rna9855|organism=Nannochloropsis gaditana|type=mRNA|length=2022bp|location=Sequence derived from alignment at KK037256.1:270177..272198+ (Nannochloropsis gaditana)
ttttttttaaaagccTGTGCGTTGTAGTGCCGACACACACGCACACTGTG TGCAGGCAGACAACGCTTGGATATCGTTTCCCTCCAAATAATGTGAAAGT TGAAAAAGCGTGCGTGgaccacctccttcaagcAGGTGCAAGCCCATTCC TGTAGTAAAGTGACAGGACCAGTACGCGGAGCATATGTCTGAAGTGCGCC ATAACAGCTTTAGCGTGACCGAATCTCATACTACACAAACTCTTCCGTGT ACTGGCAGGAGGCATTCCCCTTGACTCCTGAGCCGGGCAGCGGgtctcgc ctctctctcatcAAACTCAAGTGTGATTACTCCTTGGCCCCGTCACCTCT AAAGGCAGACGCCGCAGGACGCAGCACAGAGTAGGAATTTGCGAAACTAT TGCCATTCAAATACCCGCTGGCGGGAGACATTGCATGAAGATGGGCGAGA GTAACAGGAGCATAAAGAGGCATAGCGTACGGCTGAGGAGTATGCAATCA GCTGGGACAGCCGACGTCACGCACGAGGGTGGCAAGGACCCATTCGAATC AACATTAAGCCCACGCAGCAAAACAAGACGACGCCAAGGCTCTTGCGCCG CCTTTTCacgcgctttcccccccagtGTCGTCCTAGGTGcggtcctccac ctcctccttccctccggggCTCGCTCTCTCTCGAGCCCGGAatacccctc cttcccaccgtcctccggctctttcccctcctcctccgcacacGAGtaca tttctccttccttcccttccccggagccgccccttccccaggctggccac catcctccctacctccccccccgtcccccccccttcgccctcccttcccc tccttccccttccggcCCCATCGCGGCTTTCCTGCGCACGCTTCCCGAGA AAGACCCAGCCGAAGTGGCCTCTCGCTGTCTGGCGCCTCTGCTGGACACC GTCGTCGATGCGAACGAACGGTTGCAGCAGGCAGGcgcccaacctcctcc tcgcaaaGCTATTTTCCGGCTCCAGCGTcgaccttccctttccatcaaGA CCTACCTCTCCCGCATTGTCgagtagggaggagggagcaaggaagcaggg cgggagggcgggaggaaaacgcTCAGGTGCTTGCCTGCCGTGGTGTCCTC ATACCTCGCCCGCTCCAtcccttgcttcctctctctctctctctcaccAG GATCACTGGGCCTTCCACCCGTTGTCTCATCACGGCCTTGATTTATCTAG ATCGCATCTCCGCCAAGGAATACCCCTCTTCTTTAACAGTGCATCGGTAT TTCCCGCTCCCAGGCTTCCTCGCTCATGATCCCCTCGCTCCAACATGTTG CCTCCCCCGACCCGCTCTTCTGCATGacttccccccacctcctatGCCAT TGCATGTCCTCTGCAATTCCTTGCTCATCCCGCTACTGACTTTCcttgcc tctttttcttcttgccatcctcctGCCAGTCTCCTCTTGGCCGCTGTCAT GCTAGCTGCGAAGCACACCGGAGACGGCAACAGCTCCTGGTCTTACGACA TCTACACAAGGGCCACAGGCGTGCCTGTAGTTGAGCTCAAGGTAAGAAGG CTCcctgtttccctctttcctcccttgtaATCCCTTTTATTGGTGctctc gcgccctcccttttgGTTTTTTGCAGGCACTTTTGAGGTCCTTTCCCCGG CGGAGGGTGTGATGGCGAATAAATAACGATTGCACCCTTTTTTaaccttt tctttctcgtccgacctctcctccttccattttcttgcttGCTTGTCTCC ACGCACTCAGATTCTCGAAATGGAGATGCTTCGGATGTTGCAGTACGACC TTGTCGTCCCGCCCCATCAATTGTTTGCTTACGGAACGAAAGCCTTGCAG TACAAAAAGCTCCCTGTATTCCGACAAGAGAGTCCCTGAGGCTTCATGTA GTACACACATGatttccctttcccgttTTTTGTgggagcagaaagaagaa atCAAAAACTGGCAGTGCAGAA
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Coding sequence (CDS) from alignment at KK037256.1:270177..272198+

>rna9855 ID=rna9855|Name=rna9855|organism=Nannochloropsis gaditana|type=CDS|length=3900bp|location=Sequence derived from alignment at KK037256.1:270177..272198+ (Nannochloropsis gaditana)
ATGAAGATGGGCGAGAGTAACAGGAGCATAAAGAGGCATAGCGTACGGCT
GAGGAGTATGCAATCAGCTGGGACAGCCGACGTCACGCACGAGGGTGGCA
AGGACCCATTCGAATCAACATTAAGCCCACGCAGCAAAACAAGACGACGC
CAAGGCTCTTGCGCCGCCTTTTCacgcgctttcccccccagtGTCGTCCT
AGGTGcggtcctccacctcctccttccctccggggCTCGCTCTCTCTCGA
GCCCGGAatacccctccttcccaccgtcctccggctctttcccctcctcc
tccgcacacGAGtacatttctccttccttcccttccccggagccgcccct
tccccaggctggccaccatcctccctacctccccccccgtccccccccct
tcgccctcccttcccctccttccccttccggcCCCATCGCGGCTTTCCTG
CGCACGCTTCCCGAGAAAGACCCAGCCGAAGTGGCCTCTCGCTGTCTGGC
GCCTCTGCTGGACACCGTCGTCGATGCGAACGAACGGTTGCAGCAGGCAG
GcgcccaacctcctcctcgcaaaGCTATTTTCCGGCTCCAGCGTcgacct
tccctttccatcaaGACCTACCTCTCCCGCATTGTCgaGATCACTGGGCC
TTCCACCCGTTGTCTCATCACGGCCTTGATTTATCTAGATCGCATCTCCG
CCAAGGAATACCCCTCTTCTTTAACAGTGCATCGTCTCCTCTTGGCCGCT
GTCATGCTAGCTGCGAAGCACACCGGAGACGGCAACAGCTCCTGGTCTTA
CGACATCTACACAAGGGCCACAGGCGTGCCTGTAGTTGAGCTCAAGATTC
TCGAAATGGAGATGCTTCGGATGTTGCAGTACGACCTTGTCGTCCCGCCC
CATCAATTGTTTGCTTACGGAACGAAAGCCTTGCAGTACAAAAAGCTCCC
TGTATTCCGACAAGAGAGTCCCTGAATGAAGATGGGCGAGAGTAACAGGA
GCATAAAGAGGCATAGCGTACGGCTGAGGAGTATGCAATCAGCTGGGACA
GCCGACGTCACGCACGAGGGTGGCAAGGACCCATTCGAATCAACATTAAG
CCCACGCAGCAAAACAAGACGACGCCAAGGCTCTTGCGCCGCCTTTTCac
gcgctttcccccccagtGTCGTCCTAGGTGcggtcctccacctcctcctt
ccctccggggCTCGCTCTCTCTCGAGCCCGGAatacccctccttcccacc
gtcctccggctctttcccctcctcctccgcacacGAGtacatttctcctt
ccttcccttccccggagccgccccttccccaggctggccaccatcctccc
tacctccccccccgtcccccccccttcgccctcccttcccctccttcccc
ttccggcCCCATCGCGGCTTTCCTGCGCACGCTTCCCGAGAAAGACCCAG
CCGAAGTGGCCTCTCGCTGTCTGGCGCCTCTGCTGGACACCGTCGTCGAT
GCGAACGAACGGTTGCAGCAGGCAGGcgcccaacctcctcctcgcaaaGC
TATTTTCCGGCTCCAGCGTcgaccttccctttccatcaaGACCTACCTCT
CCCGCATTGTCgaGATCACTGGGCCTTCCACCCGTTGTCTCATCACGGCC
TTGATTTATCTAGATCGCATCTCCGCCAAGGAATACCCCTCTTCTTTAAC
AGTGCATCGTCTCCTCTTGGCCGCTGTCATGCTAGCTGCGAAGCACACCG
GAGACGGCAACAGCTCCTGGTCTTACGACATCTACACAAGGGCCACAGGC
GTGCCTGTAGTTGAGCTCAAGATTCTCGAAATGGAGATGCTTCGGATGTT
GCAGTACGACCTTGTCGTCCCGCCCCATCAATTGTTTGCTTACGGAACGA
AAGCCTTGCAGTACAAAAAGCTCCCTGTATTCCGACAAGAGAGTCCCTGA
ATGAAGATGGGCGAGAGTAACAGGAGCATAAAGAGGCATAGCGTACGGCT
GAGGAGTATGCAATCAGCTGGGACAGCCGACGTCACGCACGAGGGTGGCA
AGGACCCATTCGAATCAACATTAAGCCCACGCAGCAAAACAAGACGACGC
CAAGGCTCTTGCGCCGCCTTTTCacgcgctttcccccccagtGTCGTCCT
AGGTGcggtcctccacctcctccttccctccggggCTCGCTCTCTCTCGA
GCCCGGAatacccctccttcccaccgtcctccggctctttcccctcctcc
tccgcacacGAGtacatttctccttccttcccttccccggagccgcccct
tccccaggctggccaccatcctccctacctccccccccgtccccccccct
tcgccctcccttcccctccttccccttccggcCCCATCGCGGCTTTCCTG
CGCACGCTTCCCGAGAAAGACCCAGCCGAAGTGGCCTCTCGCTGTCTGGC
GCCTCTGCTGGACACCGTCGTCGATGCGAACGAACGGTTGCAGCAGGCAG
GcgcccaacctcctcctcgcaaaGCTATTTTCCGGCTCCAGCGTcgacct
tccctttccatcaaGACCTACCTCTCCCGCATTGTCgaGATCACTGGGCC
TTCCACCCGTTGTCTCATCACGGCCTTGATTTATCTAGATCGCATCTCCG
CCAAGGAATACCCCTCTTCTTTAACAGTGCATCGTCTCCTCTTGGCCGCT
GTCATGCTAGCTGCGAAGCACACCGGAGACGGCAACAGCTCCTGGTCTTA
CGACATCTACACAAGGGCCACAGGCGTGCCTGTAGTTGAGCTCAAGATTC
TCGAAATGGAGATGCTTCGGATGTTGCAGTACGACCTTGTCGTCCCGCCC
CATCAATTGTTTGCTTACGGAACGAAAGCCTTGCAGTACAAAAAGCTCCC
TGTATTCCGACAAGAGAGTCCCTGAATGAAGATGGGCGAGAGTAACAGGA
GCATAAAGAGGCATAGCGTACGGCTGAGGAGTATGCAATCAGCTGGGACA
GCCGACGTCACGCACGAGGGTGGCAAGGACCCATTCGAATCAACATTAAG
CCCACGCAGCAAAACAAGACGACGCCAAGGCTCTTGCGCCGCCTTTTCac
gcgctttcccccccagtGTCGTCCTAGGTGcggtcctccacctcctcctt
ccctccggggCTCGCTCTCTCTCGAGCCCGGAatacccctccttcccacc
gtcctccggctctttcccctcctcctccgcacacGAGtacatttctcctt
ccttcccttccccggagccgccccttccccaggctggccaccatcctccc
tacctccccccccgtcccccccccttcgccctcccttcccctccttcccc
ttccggcCCCATCGCGGCTTTCCTGCGCACGCTTCCCGAGAAAGACCCAG
CCGAAGTGGCCTCTCGCTGTCTGGCGCCTCTGCTGGACACCGTCGTCGAT
GCGAACGAACGGTTGCAGCAGGCAGGcgcccaacctcctcctcgcaaaGC
TATTTTCCGGCTCCAGCGTcgaccttccctttccatcaaGACCTACCTCT
CCCGCATTGTCgaGATCACTGGGCCTTCCACCCGTTGTCTCATCACGGCC
TTGATTTATCTAGATCGCATCTCCGCCAAGGAATACCCCTCTTCTTTAAC
AGTGCATCGTCTCCTCTTGGCCGCTGTCATGCTAGCTGCGAAGCACACCG
GAGACGGCAACAGCTCCTGGTCTTACGACATCTACACAAGGGCCACAGGC
GTGCCTGTAGTTGAGCTCAAGATTCTCGAAATGGAGATGCTTCGGATGTT
GCAGTACGACCTTGTCGTCCCGCCCCATCAATTGTTTGCTTACGGAACGA
AAGCCTTGCAGTACAAAAAGCTCCCTGTATTCCGACAAGAGAGTCCCTGA
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Synonyms
Publications