EWM20851.1, cds9824 (CDS) Nannochloropsis gaditana

Overview
NameEWM20851.1
Unique Namecds9824
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:270611..271248 +
Alignment locationKK037256.1:271377..271472 +
Alignment locationKK037256.1:271656..271767 +
Alignment locationKK037256.1:271987..272115 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20851.1
ProductCyclin-like protein
Orig transcript idgnl|cribi|Naga_100514g4.5675.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:270611..271248 +
KK037256.1supercontigKK037256.1:271377..271472 +
KK037256.1supercontigKK037256.1:271656..271767 +
KK037256.1supercontigKK037256.1:271987..272115 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0065009regulation of molecular function
GO:0007049cell cycle
GO:0006464cellular protein modification process
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0019901protein kinase binding
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like
IPR013922Cyclin_PHO80-like
Homology
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|585100789|gb|EWM20851.1| (Cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query:    1 MKMGESNRSIKRHSVRLRSMQSAGTADVTHEGGKDPFESTLSPRSKTRRRQGSCAAFSRAFPPSVVLGAVLHLLLPSGARSLSSPEYPSFPPSSGSFPSSSAHEYISPSFPSPEPPLPQAGHHPPYLPPRPPPFALPSPPSPSGPIAAFLRTLPEKDPAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYPSSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQYKKLPVFRQESP 324
            MKMGESNRSIKRHSVRLRSMQSAGTADVTHEGGKDPFESTLSPRSKTRRRQGSCAAFSRAFPPSVVLGAVLHLLLPSGARSLSSPEYPSFPPSSGSFPSSSAHEYISPSFPSPEPPLPQAGHHPPYLPPRPPPFALPSPPSPSGPIAAFLRTLPEKDPAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYPSSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQYKKLPVFRQESP
Sbjct:    1 MKMGESNRSIKRHSVRLRSMQSAGTADVTHEGGKDPFESTLSPRSKTRRRQGSCAAFSRAFPPSVVLGAVLHLLLPSGARSLSSPEYPSFPPSSGSFPSSSAHEYISPSFPSPEPPLPQAGHHPPYLPPRPPPFALPSPPSPSGPIAAFLRTLPEKDPAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYPSSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQYKKLPVFRQESP 324          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|727147943|emb|CEG69725.1| (Putative Cyclin [Rhizopus microsporus])

HSP 1 Score: 91.2781 bits (225), Expect = 3.300e-18
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 0
Query:  158 PAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYP----SSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQY 313
            P E+  + +A LL ++V  N++L             F  +  P + I  YLSRI++ T  S   L++ LIY DRI+  + P    +SLTVHRLL+ ++++A+K T D    +S   Y +  G+P+ EL  LE+E L + ++DL V    + AYG + L +
Sbjct:   14 PTELLVKIVADLLISIVKENDKLSNRSVTH------FHSRTVPPIGIYAYLSRILKFTSFSNEALLSTLIYFDRIAQHKGPNYAVNSLTVHRLLITSILVASKFTSD--VFYSNTRYAKVGGIPLCELNQLELEFLFLCKFDLHVKLENMQAYGDQLLTH 165          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|145494266|ref|XP_001433127.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124400244|emb|CAK65730.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 89.3521 bits (220), Expect = 5.169e-18
Identity = 50/156 (32.05%), Postives = 80/156 (51.28%), Query Frame = 0
Query:  166 LAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKE---YPSSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQYKKLPV 318
            +A +LD ++   + L+         ++ F   + PS+SI  YL RI + T  S +C + ALIYLDR+  K      +S  +HR LL A+++A K+  D      Y  Y +  GV V E+ ILE E L ++ + L +     F Y  K L+Y ++ +
Sbjct:   11 VANILDEIIKETDTLEI----EQDSQSYFHANKAPSISIHNYLQRIAKYTHCSEQCFVIALIYLDRLQEKHPYLVLNSKCIHRFLLLAIVMAIKYQDDDYYKNEY--YAKVGGVSVKEIFILEQEFLELMDHQLFIDEQYYFLYEKKLLEYGEIEM 160          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|1178048605|gb|ORE04269.1| (cyclin-domain-containing protein [Rhizopus microsporus var. microsporus])

HSP 1 Score: 90.8929 bits (224), Expect = 5.512e-18
Identity = 54/160 (33.75%), Postives = 88/160 (55.00%), Query Frame = 0
Query:  158 PAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYP----SSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQY 313
            P ++  + +A LL ++V  N++L             F  +  P + I  YLSRI++ T  S   L++ LIY DRI+  + P    +SLTVHRLL+ ++++A+K T D    +S   Y +  G+P+ EL  LE+E L + ++DL V    + AYG + L +
Sbjct:   14 PTDLLVKIVADLLISIVKENDKLSNQSVTH------FHSRTVPPIGIYAYLSRILKFTSFSNEALLSTLIYFDRIAQHKGPNYAVNSLTVHRLLITSILVASKFTSD--VFYSNTRYAKVGGIPLCELNQLELEFLFLCKFDLHVKLENMQAYGDQLLTH 165          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|729709091|emb|CEI94479.1| (Putative Cyclin [Rhizopus microsporus])

HSP 1 Score: 91.6633 bits (226), Expect = 5.966e-18
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 0
Query:  158 PAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYP----SSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQY 313
            P E+  + +A LL ++V  N++L             F  +  P + I  YLSRI++ T  S   L++ LIY DRI+  + P    +SLTVHRLL+ ++++A+K T D    +S   Y +  G+P+ EL  LE+E L + ++DL V    + AYG + L +
Sbjct:   48 PTELLVKIVADLLISIVKENDKLSNRSVTH------FHSRTVPPIGIYAYLSRILKFTSFSNEALLSTLIYFDRIAQHKGPNYAVNSLTVHRLLITSILVASKFTSD--VFYSNTRYAKVGGIPLCELNQLELEFLFLCKFDLHVKLENMQAYGDQLLTH 199          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|168064171|ref|XP_001784038.1| (predicted protein [Physcomitrella patens] >gi|162664424|gb|EDQ51144.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 87.8113 bits (216), Expect = 1.984e-17
Identity = 52/136 (38.24%), Postives = 76/136 (55.88%), Query Frame = 0
Query:  166 LAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKE---YPSSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVV 298
            LA +LD +V  NE+   A +Q   +  IF   R PS++I  YL RI + T  S  C +   +YLDR+  ++     +SL VHRLL+ +VM+A K   D + + ++  + R  GV VVEL  LE+E L  L + L V
Sbjct:   17 LAAVLDRLVSRNEQFANAPSQQGKKLTIFHGLRAPSINIAKYLERIFKYTNCSPSCFVVGYVYLDRLIHRQPDLLVTSLNVHRLLVTSVMVATKMLDDVHFNNAF--FARVGGVSVVELNRLELEFLFRLDFKLSV 150          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|573944024|ref|XP_006654367.1| (PREDICTED: cyclin-P3-1 [Oryza brachyantha])

HSP 1 Score: 89.7373 bits (221), Expect = 1.998e-17
Identity = 62/162 (38.27%), Postives = 88/162 (54.32%), Query Frame = 0
Query:  166 LAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAK--EYPSSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQY-KKLPVFRQESP 324
            LA  LD VV  NE L  +  +      IF  QR P LSIK Y  RI + +  S  C + ALIY++R   +   Y +SL+VHRLL+ +V++AAK T D   + ++  Y R  G+  VE+  LE+++L  L + L V    L  +G+  LQ  K+  VF  E P
Sbjct:   40 LATYLDRVVQKNEDLLDSN-EIKNSSTIFHGQRAPDLSIKLYAERIFKYSECSPSCFVLALIYMERYLQQPHVYMTSLSVHRLLITSVVVAAKFTDDAFFNNAF--YARVGGISTVEMNRLELDLLFNLDFRLKVD---LDTFGSYCLQLEKETRVFALERP 195          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|544211251|ref|XP_005536025.1| (similar to PREG1-like negative regulator [Cyanidioschyzon merolae strain 10D] >gi|449016337|dbj|BAM79739.1| similar to PREG1-like negative regulator [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 92.0485 bits (227), Expect = 2.541e-17
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 0
Query:  140 PSPSGPIAAFLRTLP-EKDPAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYP---SSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAY 306
            PSPS  + ++   +  +++  ++  R L+  L + V  NE+ +  G Q     + F   R PS+S++ Y  RI      S  C + AL+YLDR+SA+      +S T HRLL+ AVMLAAK   D   + +Y  Y +  G+P+ E+  LE+ MLR L Y L V   + + +
Sbjct:  137 PSPSASLISWSAEINNDREKGDLVGRILSAALLSWVADNEQTRARGMQMQ-EASPFHASRIPSISVEAYFERIYTFAFCSKACYVIALLYLDRLSARNANLALTSFTAHRLLITAVMLAAKFFDDIFYNNAY--YAKVGGLPLSEMNALEVRMLRELSYQLNVSVEEFYNF 304          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|1178062623|gb|ORE17117.1| (cyclin-domain-containing protein [Rhizopus microsporus])

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 54/160 (33.75%), Postives = 88/160 (55.00%), Query Frame = 0
Query:  158 PAEVASRCLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKE---YP-SSLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGTKALQY 313
            P E+  + +A LL ++V  N++L          + +      P + I  YLSRI++ T  S   L++ LIY DRI+  +   Y  +SLTVHRLL+ ++++A+K T D    +S   Y +  G+P+ EL  LE+E L + ++DL V    + AYG + L +
Sbjct:   14 PTELLVKIVADLLISIVKENDKLSNQSVTHFHSRTV------PPIGIYAYLSRILKFTSFSNEALLSTLIYFDRIAQHKGLNYAVNSLTVHRLLITSILVASKFTSD--VFYSNTRYAKVGGIPLCELNQLELEFLFLCKFDLHVKLENMQAYGDQLLTH 165          
BLAST of EWM20851.1 vs. NCBI_GenBank
Match: gi|1029109429|ref|XP_016721855.1| (PREDICTED: cyclin-U4-1-like isoform X1 [Gossypium hirsutum] >gi|1050627057|ref|XP_017636447.1| PREDICTED: cyclin-U4-1-like [Gossypium arboreum])

HSP 1 Score: 88.1965 bits (217), Expect = 3.326e-17
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 0
Query:  165 CLAPLLDTVVDANERLQQAGAQPPPRKAIFRLQRRPSLSIKTYLSRIVEITGPSTRCLITALIYLDRISAKEYPS----SLTVHRLLLAAVMLAAKHTGDGNSSWSYDIYTRATGVPVVELKILEMEMLRMLQYDLVVPPHQLFAYGT 308
            CL   +    D N R Q      P + ++F    RP++SI++YL RI +    S  C I A IYLDR  AK+ P+    S  VHRLL+ +VM+AAK   D   + +Y  Y +  G+  +E+  LEM+ L  L + L V P+  + Y T
Sbjct:   19 CLLQKVAESNDVNCRFQ------PQKVSVFHGLTRPTISIQSYLDRIYKYANCSPSCFIVAYIYLDRF-AKKKPTLPINSFNVHRLLITSVMVAAKFMDDIYYNNAY--YAKVGGISTIEMNYLEMDFLFGLGFHLNVAPNTFYTYFT 157          
The following BLAST results are available for this feature:
BLAST of EWM20851.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100789|gb|EWM20851.1|0.000e+0100.00Cyclin-like protein [Nannochloropsis gaditana][more]
gi|727147943|emb|CEG69725.1|3.300e-1834.38Putative Cyclin [Rhizopus microsporus][more]
gi|145494266|ref|XP_001433127.1|5.169e-1832.05hypothetical protein [Paramecium tetraurelia strai... [more]
gi|1178048605|gb|ORE04269.1|5.512e-1833.75cyclin-domain-containing protein [Rhizopus microsp... [more]
gi|729709091|emb|CEI94479.1|5.966e-1834.38Putative Cyclin [Rhizopus microsporus][more]
gi|168064171|ref|XP_001784038.1|1.984e-1738.24predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|573944024|ref|XP_006654367.1|1.998e-1738.27PREDICTED: cyclin-P3-1 [Oryza brachyantha][more]
gi|544211251|ref|XP_005536025.1|2.541e-1733.92similar to PREG1-like negative regulator [Cyanidio... [more]
gi|1178062623|gb|ORE17117.1|2.857e-1733.75cyclin-domain-containing protein [Rhizopus microsp... [more]
gi|1029109429|ref|XP_016721855.1|3.326e-1736.49PREDICTED: cyclin-U4-1-like isoform X1 [Gossypium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9855rna9855Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications