rna9841, rna9841 (mRNA) Nannochloropsis gaditana

Overview
Namerna9841
Unique Namerna9841
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length627
Alignment locationKK037256.1:234968..236515 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100164g2.9736.mrna
Orig protein idgnl|cribi|Naga_100164g2.9736
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:234968..236515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100164g2gene9554Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9841rna9841-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20856.1cds9810Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9841 ID=rna9841|Name=rna9841|organism=Nannochloropsis gaditana|type=mRNA|length=627bp
ATGGCAGGGGGTTACACTTTTGTCGGGGGAGGAACGCACATATGTATTGG
CTCTCCCTCGGTCGCTGCCCAGTCGACCGCCCAAGAAGCCGGCATTGGAG
GGACGTTCTATTTGGCAGCGGGCTATGTCACTGCCATCGGGAGTCCGGTC
GTTGATTTTGTTGGCATTGCCCTTAGCACGTTGGCGGGGGAATTTGTGGC
AGTAGGGGCTGGCTTCCTAGTCTGGATTGGAGGTCCCTTTGTGGAGTACA
GTGCCATCGAGGTCTTCAAAGGCTACGGCGGGACTCTCTTTGTAGGGACG
GGAGCCTTGGTCGTCGGCTACTCCCCCTTGGCGGAAGCGATTGCCATCGT
TCCCCCCCACAAAGATTATTGGGTGCAGGGGACTTGCGAGCCCTACGAGG
CGGCCTGGGCTCCGGGTCCGCCCTTTTTCGTGACGGGAGGGGGAAAAAAT
TGCGACGTGTACGAAGAGCCGCCCGAGGAGAAGCAGAAAAATTGGCGACA
AAGCGGGAGGGACGAGGCCCGGGTCATGTTGAATGCCCTTTTCCGCGAGC
AGGAAGACAGTCAGCGGCGGAGGCGACTCAACTACCGCCAATCCCCTCTT
TTGTGGAATATACGGAGCAGTTTTTGA
back to top

protein sequence of rna9841

>rna9841-protein ID=rna9841-protein|Name=rna9841|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MGRAFSPLSSILLLLLMLVLMHSPAFAGTKRNKVTRAERRERKKGCILKF
YPKNPKEAWPTTASSDGVYRLAVVIRNRKRGSLYKNVYFSFQKPATASWA
GEPRAKPALPGATLIPPFLPSAWWLYGPFNVSGGRRQYVEIAYTLSACSP
GIIWNVTTSIVPVPPFFQRPPSEALPATCLAYAYGRQYAGKTPCV
back to top

mRNA from alignment at KK037256.1:234968..236515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9841 ID=rna9841|Name=rna9841|organism=Nannochloropsis gaditana|type=mRNA|length=1548bp|location=Sequence derived from alignment at KK037256.1:234968..236515- (Nannochloropsis gaditana)
AGGCGACACCGTCATCTTTACAACTTCACAAGTGATTTATTTGATTTTTA
TATGCTAAGCACATGAAGGATTAAATTTGCGAGTCTGGCATACTCACACC
AACATTCAATGGTTTGTGTCCCTCCTATCTTTATTTCGACAAAAACATAG
CGCGACCATGGGGCGAGCATTTTCTCCTCTTTCAAGTATTCTTCTCCTCC
TTTTAATGCTTGTACTCATGCATTCTCCGGCATTCGCTGGCACCAAAAGA
AATAAAGTGACCCGTGCTGAGCGTCGAGAGCGGAAAAAGGGATGCATTTT
GAAATTTTATCCAAAAAACCCCAAGGAGGCTTGGCCCACGACTGCCTCTT
CAGACGGTGTTTATCGCCTGGCCGTAGTCATCCGAAACCGGAAAAGGGGT
TCTTTGTACAAGAACGTCTATTTTTCTTTTCAAAAACCCGCCACGGCTTC
CTGGGCAGGGGAGCCCCGGGCAAAGCCGGCCTTGCCGGGCGCGACTCTGA
TTCCTCCTTTCTTGCCAAGCGCATGGTGGCTATATGGCCCATTCAACGTA
AGCGGAGGGAGACGACAGTATGTTGAGATTGCCTATACACTGTCGGCCTG
CTCGCCTGGCATTATATGGAATGTAACCACCAGCATCGTCCCAGTTCCTC
CATTTTTCCAACGGCCACCCTCAGAGGCTTTACCAGCGACATGCCTGGCG
TATGCATATGGGGTGAGTAGCCACGAAAATACATGACTAGATTGAAAGGG
AGCACTTTGTGCATTCAAATGAAGCTTACCTGCAGGGCTGGGAGTGTAGA
GAAGGGAAGAGATCTTTCTGGACGTATTCGTGAGGTGTGGAATTACGTAC
TCTCGGGCCACAGAGGCGAGTGACCGCCTGTAGGACAAAGTGAAGACGAA
TGTAGCCTTACTAACTGTCATTTACGAAAATGTATTTTTTCCCCCCTTAC
TTCGATCAATGATTACAGCGTCAATATGCGGGCAAGACTCCATGTGTTTA
GGAGAATTTATTTCGTCCACACGCTTAGATATGCGAGTTTGCTCGATGGC
GAGATAAAAGATTGAATCTGCTACCCATGTCAGTTGGAAGAAAGTCCAAG
CAGGAGATACATCACTATATCAAGAGTTGTTCCGCCAGAAGCCTAAAAGG
ATCAACTTTACCATACGACTTATTCTGTGAGCATGCTGTTAAAGAGTTTT
ATAGACACAAAAAGCCCCACATGTATCGAAATGACATCAAGTGGTGAATG
GCCAAGATGTCGAAATATTTTATTTCGGGCATCCGCGACATTGATCCGCC
GAGTGCCGACTCCACCCTTTTGAGATGATTCTTGGCTTCCTCCCAAAATT
CCACCATACAGCCTCCTTATCCTTTCAATTGCTCGATTTGAGGCTCAGTA
TTATATTCTTGCTCACATATGTCACGTTGCGCCATTAAATCACTGGCATT
ACAAAAGCCTCTAGCATGCGCATTTGATCCCTTACGCGCAGCACGTGTCT
ATGGTCAGCCTCCCAACTTTAGTTTAAATAGTCCCAAAAAATTTAAGT
back to top

Coding sequence (CDS) from alignment at KK037256.1:234968..236515-

>rna9841 ID=rna9841|Name=rna9841|organism=Nannochloropsis gaditana|type=CDS|length=1176bp|location=Sequence derived from alignment at KK037256.1:234968..236515- (Nannochloropsis gaditana)
CGTCAATATGCGGGCAAGACTCCATGTGTTTAGATGGGGCGAGCATTTTC
TCCTCTTTCAAGTATTCTTCTCCTCCTTTTAATGCTTGTACTCATGCATT
CTCCGGCATTCGCTGGCACCAAAAGAAATAAAGTGACCCGTGCTGAGCGT
CGAGAGCGGAAAAAGGGATGCATTTTGAAATTTTATCCAAAAAACCCCAA
GGAGGCTTGGCCCACGACTGCCTCTTCAGACGGTGTTTATCGCCTGGCCG
TAGTCATCCGAAACCGGAAAAGGGGTTCTTTGTACAAGAACGTCTATTTT
TCTTTTCAAAAACCCGCCACGGCTTCCTGGGCAGGGGAGCCCCGGGCAAA
GCCGGCCTTGCCGGGCGCGACTCTGATTCCTCCTTTCTTGCCAAGCGCAT
GGTGGCTATATGGCCCATTCAACGTAAGCGGAGGGAGACGACAGTATGTT
GAGATTGCCTATACACTGTCGGCCTGCTCGCCTGGCATTATATGGAATGT
AACCACCAGCATCGTCCCAGTTCCTCCATTTTTCCAACGGCCACCCTCAG
AGGCTTTACCAGCGACATGCCTGGCGTATGCATATGGGCGTCAATATGCG
GGCAAGACTCCATGTGTTTAGATGGGGCGAGCATTTTCTCCTCTTTCAAG
TATTCTTCTCCTCCTTTTAATGCTTGTACTCATGCATTCTCCGGCATTCG
CTGGCACCAAAAGAAATAAAGTGACCCGTGCTGAGCGTCGAGAGCGGAAA
AAGGGATGCATTTTGAAATTTTATCCAAAAAACCCCAAGGAGGCTTGGCC
CACGACTGCCTCTTCAGACGGTGTTTATCGCCTGGCCGTAGTCATCCGAA
ACCGGAAAAGGGGTTCTTTGTACAAGAACGTCTATTTTTCTTTTCAAAAA
CCCGCCACGGCTTCCTGGGCAGGGGAGCCCCGGGCAAAGCCGGCCTTGCC
GGGCGCGACTCTGATTCCTCCTTTCTTGCCAAGCGCATGGTGGCTATATG
GCCCATTCAACGTAAGCGGAGGGAGACGACAGTATGTTGAGATTGCCTAT
ACACTGTCGGCCTGCTCGCCTGGCATTATATGGAATGTAACCACCAGCAT
CGTCCCAGTTCCTCCATTTTTCCAACGGCCACCCTCAGAGGCTTTACCAG
CGACATGCCTGGCGTATGCATATGGG
back to top
Synonyms
Publications