EWM20856.1, cds9810 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20856.1
Unique Name	cds9810
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037256.1:235804..236358 -
Alignment location	KK037256.1:235515..235547 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20856.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100164g2.9736.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:235804..236358 -
KK037256.1	supercontig	KK037256.1:235515..235547 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM20856.1 vs. NCBI_GenBank
Match: gi|585100796|gb|EWM20856.1| (hypothetical protein Naga_100164g2 [Nannochloropsis gaditana])

HSP 1 Score: 395.201 bits (1014), Expect = 3.141e-139
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0

Query:    1 MGRAFSPLSSILLLLLMLVLMHSPAFAGTKRNKVTRAERRERKKGCILKFYPKNPKEAWPTTASSDGVYRLAVVIRNRKRGSLYKNVYFSFQKPATASWAGEPRAKPALPGATLIPPFLPSAWWLYGPFNVSGGRRQYVEIAYTLSACSPGIIWNVTTSIVPVPPFFQRPPSEALPATCLAYAYGRQYAGKTPCV 195
            MGRAFSPLSSILLLLLMLVLMHSPAFAGTKRNKVTRAERRERKKGCILKFYPKNPKEAWPTTASSDGVYRLAVVIRNRKRGSLYKNVYFSFQKPATASWAGEPRAKPALPGATLIPPFLPSAWWLYGPFNVSGGRRQYVEIAYTLSACSPGIIWNVTTSIVPVPPFFQRPPSEALPATCLAYAYGRQYAGKTPCV
Sbjct:    1 MGRAFSPLSSILLLLLMLVLMHSPAFAGTKRNKVTRAERRERKKGCILKFYPKNPKEAWPTTASSDGVYRLAVVIRNRKRGSLYKNVYFSFQKPATASWAGEPRAKPALPGATLIPPFLPSAWWLYGPFNVSGGRRQYVEIAYTLSACSPGIIWNVTTSIVPVPPFFQRPPSEALPATCLAYAYGRQYAGKTPCV 195

[Close]

BLAST of EWM20856.1 vs. NCBI_GenBank
Match: gi|553182597|ref|XP_005853755.1| (hypothetical protein NGA_0476301 [Nannochloropsis gaditana CCMP526] >gi|422295308|gb|EKU22607.1| hypothetical protein NGA_0476301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 394.045 bits (1011), Expect = 8.810e-139
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0

Query:    1 MGRAFSPLSSILLLLLMLVLMHSPAFAGTKRNKVTRAERRERKKGCILKFYPKNPKEAWPTTASSDGVYRLAVVIRNRKRGSLYKNVYFSFQKPATASWAGEPRAKPALPGATLIPPFLPSAWWLYGPFNVSGGRRQYVEIAYTLSACSPGIIWNVTTSIVPVPPFFQRPPSEALPATCLAYAYGRQYAGKTPCV 195
            MGRAFSPLSSILLLLLMLVLMHSPAFAG+KRNKVTRAERRERKKGCILKFYPKNPKEAWPTTASSDGVYRLAVVIRNRKRGSLYKNVYFSFQKPATASWAGEPRAKPALPGATLIPPFLPSAWWLYGPFNVSGGRRQYVEIAYTLSACSPGIIWNVTTSIVPVPPFFQRPPSEALPATCLAYAYGRQYAGKTPCV
Sbjct:    1 MGRAFSPLSSILLLLLMLVLMHSPAFAGSKRNKVTRAERRERKKGCILKFYPKNPKEAWPTTASSDGVYRLAVVIRNRKRGSLYKNVYFSFQKPATASWAGEPRAKPALPGATLIPPFLPSAWWLYGPFNVSGGRRQYVEIAYTLSACSPGIIWNVTTSIVPVPPFFQRPPSEALPATCLAYAYGRQYAGKTPCV 195

The following BLAST results are available for this feature:

BLAST of EWM20856.1 vs. NCBI_GenBank

BLAST of EWM20856.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585100796\|gb\|EWM20856.1\|	3.141e-139	100.00	hypothetical protein Naga_100164g2 [Nannochloropsi...	[more]
gi\|553182597\|ref\|XP_005853755.1\|	8.810e-139	99.49	hypothetical protein NGA_0476301 [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9841	rna9841	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications