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Properties
| Property Name | Value |
|---|
| Product | Ovarian tumor, otubain |
| Orig transcript id | gnl|cribi|Naga_100201g11.6913.mrna |
| Orig protein id | gnl|cribi|Naga_100201g11.6913 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037256.1 | supercontig | KK037256.1:180407..182520 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9818 ID=rna9818|Name=rna9818|organism=Nannochloropsis gaditana|type=mRNA|length=1465bp
CTCGACGAAATGGACCGCATGGTCTGACTGCATCTCTCTCACAAACCCAC
CCTCCTTTGCTTCCTCCCATTGTTCCTTGCAGGAGGACCACCGTGCCCCT
CGAAAGCAATCGCAAGCGACATCGTCACCCCTTCGAGCATGTCCCAAGCC
AAGCAAAGCCCCAGCAAGATGCTGGTTATGCTCCCCATTTTTTTCATGGC
TCAAAAGGTCACCTACACCGACGATCTTGTCAACATTCTCCGTATTTCCT
ACTACGCCGTCCAAGCCGTCACCCTTCTTGTCGCCTACGTATACATTCGC
AACAAAATCATGGCGGCCAACGATCGCACCCCCATATACCTTCCCCCTGT
GGCCTTGCCCTTCGGCATGGGTCCTGCTGCGGACAACCCCCGGCCAAAGG
AAACCAGCTACTTTGACCACGAGATGGAGCAGTTGAACACACTGATCCGT
TCCACCCTGATCGGCGTCGCGATGGTCTCTTTCATGCATTGGAAGATGGG
CGTGAAACCCGTCCTCCTGCTCCAAACCCTCATGGGCCCGATGAACCTGA
TGGACAATGGGCTGGTTAAGAAATACGTGTTGGGGAGCAAGGAGCGTGTC
TGGGGGGAGCTTCTAGACGGGGAAGATGACGCGACGATCCCTGTCGGGGC
TGTCGGGGCGGTGGAGAAGGAGGGAGAAGGGGAGAGCGTGGAGGAGAAGG
CTAAACGGATGGAGAAGGTGATGGACGAGGTCTTTAACAAGGAGAAGCCC
TGTGCGGCCCTGCTCAAAGTGTTACAGAAGGAGAATGTCAATTACCAGAC
GCAGCAGGAGCAATACAGCCCCCTCACTGTTCTTTGCAGCCGCCCCGATG
TGACGGAGGAGCAAGTCAAGCAAGCGCTGTTCCTGGGTGCCCATAAATTC
CATAGGGACGAAGACGGGTGCACGGCCCTACATTGGGCAGCCATGAAAGG
GGCGGTGGCGGCTGCTACGGTTTTGACCTCAGGGAATAACCGTGACGTCG
AGAAATTGCTTGGAATGCAAGATGGGGACAAGAAAACGGCCGTGGAACTG
GCGAAAGAAAGTATTGAGCCGACTCACGAGCAAGTGGAGGCAATTTTACA
GGCTGCGGAGAAGAGGATTGAGGCAGCGATGGTAGAAAATTTGGATTGAA
TGGGCTGCATCCAGTATAGGAAGGAGGTTTGAGTTTGTGGTGAGCGAGGA
ACAACGCTGTGAATAGAGTGGAAGAAACGGATTGAGTTGAGGACAGTGTC
TCGATCAAGAGAAGCAGATAGAAGAATTAAATTTTTGGAAGCGCTATGAA
GAAATGAGAAGAAGGATATGGGGGATGTTGTTTCTTGATGCGAGGCACAG
CTTTTTGCAAGTGATGCACTTTCATGTCCAAGGGCGCCAAAAGTGAAATG
CGTGGTCTCTTCATTCCAGTAAAGTAAAAACAAACGATCAAATTCTCCAA
CAAGATCCATGTGGT back to topprotein sequence of rna9818 >rna9818-protein ID=rna9818-protein|Name=rna9818|organism=Nannochloropsis gaditana|type=polypeptide|length=306bp
MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPL
VEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTIL
RLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQM
LRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESV
ENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGA
VAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEV
QVSGWE back to topmRNA from alignment at KK037256.1:180407..182520+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9818 ID=rna9818|Name=rna9818|organism=Nannochloropsis gaditana|type=mRNA|length=2114bp|location=Sequence derived from alignment at KK037256.1:180407..182520+ (Nannochloropsis gaditana)
CCAGCTATTCTTACGAATAAGTAATTGCCTTCGGAGTCATATGTGCCATG
ATAATCCACCTACAAAGGAGCCCGCATAGTCACAAACAGCTAAAGAAAGG
ATCACCACAAGGATGACGGCTTCCCAATCCCCTTCCACATCTCATCAGGG
TAAAGaaatcacctcctccctgacaAAAACTTCAAACCTAAGGGCCCAAT
CTGTCGACAAGCGCTGTTTACAGCTGCTATGCGTCGATGCGCCTCCCCGT
TTGGAATGATTCCTCCCGAGGAATCAGAATGCAACGACGTAGGGGAAGGC
CATGGCATAGAAGCAAGAGAAGCTGAGTTACAGCCCGCAGTTGACAGCTT
GGCCTCAAGCATGTCGTACCATCCTTTAGTAGAAGACCCCGAATGGAAAC
TCTTCGCGTCGTTCGACAGTCTGGATTTCAGTTTTGTGGGGGGAGCTATC
GGAGTCTGTCGGCCAGTACCACAAGAGGTGAGTGAGGGACGTATTTTTCC
GGTCTTCCaaaagggggagagcagCTGTTGAGGCAAAGCTTTAATTGATT
ATTAACGAATAGAGCTGAAACAGAAACGTGAGCACTTCTCATTCCCCTTT
GCCTGCTCTGTCGATCTTCTCTTCTGCTCTTCCTCAGTTTTCCCCGATTT
ACAAAGCCACCCTGACGATGCTGAAGCCCACGATCCTCCGACTCACTGGC
CTTGGAtctctctttcttggcaAAAAAGAGCGCGAAGTCATGCTTTGGGA
CACACCAATTTCCCCCACAGCCGCTTCCGTCAGTcgaccatcctcctccc
gccctcccgcagACAATTTGCGATTAGCGGATCAGATGCTTCGTCTCGCC
TTGGTGGGGAAGCCACGCCGTTACTCCTACTGGTATTTGCAATATTTCAC
AACTACGGACGTCGGTAAATTACTGGGGCGATGGCATGGAGATTATAGGG
AGGAGTCaatggagggacggaggcagggagagagcgtGGAGAACAACGTG
ATCCTGGCTAAGATCGAAGAGATGACAGGGACGAGGATCTTGGTGGCGCC
CCATGATGGAATGGGGGTGCGTCGGTGTTTCCTGCTGATGGGCGAAGAGG
AGTTGGTGACACGAGCGCTAACTTTGTTACAGGGCGCCGTCGCGCAAAAG
ATATGCCCGAGtcgaaaggaaggggcggagataCTGGcgaagatgggagg
gagggagggaggactaGGCAGGGACGAAAGATTGGAGGAGATCCGCCTCG
AGTTGCGGGATAAACACAAGctgaggatgatggaggtgCAGGTGAGTGGA
TGGGAATGACGCTGCACGGGACTTGAAGAGAGAATGGGTGATGGTGGTGT
CCTGGCATGCCCAACGCACGACCCCATCGAGCAAATATGCCTCCATgttt
tccttccctacccTCCGGAAGCCAGCTATCACCGTTACCGTGCCTCACTC
TCAGTCCTCTAGtatcctctttctctgcctcaaTGCCCGCAGCGAGATGG
AAACTGCCTCTTTCGAGCCCTCTCGGCTTTCGAGCATGGCACCGAGAGCC
AGCACAAGCAGGTGCGCGCCATGATTGTCGcccgcttggaggaggccccG
GAGGCCATGGCAGTGACGGCACTAGTGGAAGGTGTTTCGGAGGAAGAGTA
TGTGAAAGGCATGGCCCAAGACCGGCAGTGGGGGGGCTACACCGAGTGCA
TCGCATATTcggaggcaaggggaaggtCTGTGCGCCTGTTCGTGGAGAAC
GAGAAAATTGGACTGCGTTGCACGGACATTGACGCCGGACAAGGGCCTCA
GCAGGACGATGGGAGCCGAGTACACTTGTTACTTTACAAATCGCACTACT
GGTTACTAGTGCGAGGGTGATCTATGATCGCATTAGTTGAAGGAAATTAT
CAGATTCAGCAGTTTTCAACATTCGTGCACAGCGATTTTTAAAAACATCG
TTTTGAGAAATGTATGTGAGCATGTACAAGTTTGTGGTGAGGTTAAGATA
GCTGTCAACCACCTTAAAATTGGAGTCGCTCAGAACAGAACTGATCTGCT
CGATTGAATTTCATATACACATTTATATAATTTCTGGAAGAAGAATGTGA
AGTAGGCGAATGTA back to topCoding sequence (CDS) from alignment at KK037256.1:180407..182520+ >rna9818 ID=rna9818|Name=rna9818|organism=Nannochloropsis gaditana|type=CDS|length=1842bp|location=Sequence derived from alignment at KK037256.1:180407..182520+ (Nannochloropsis gaditana)
ATGCGTCGATGCGCCTCCCCGTTTGGAATGATTCCTCCCGAGGAATCAGA
ATGCAACGACGTAGGGGAAGGCCATGGCATAGAAGCAAGAGAAGCTGAGT
TACAGCCCGCAGTTGACAGCTTGGCCTCAAGCATGTCGTACCATCCTTTA
GTAGAAGACCCCGAATGGAAACTCTTCGCGTCGTTCGACAGTCTGGATTT
CAGTTTTGTGGGGGGAGCTATCGGAGTCTGTCGGCCAGTACCACAAGAGT
TTTCCCCGATTTACAAAGCCACCCTGACGATGCTGAAGCCCACGATCCTC
CGACTCACTGGCCTTGGAtctctctttcttggcaAAAAAGAGCGCGAAGT
CATGCTTTGGGACACACCAATTTCCCCCACAGCCGCTTCCGTCAGTcgac
catcctcctcccgccctcccgcagACAATTTGCGATTAGCGGATCAGATG
CTTCGTCTCGCCTTGGTGGGGAAGCCACGCCGTTACTCCTACTGGTATTT
GCAATATTTCACAACTACGGACGTCGGTAAATTACTGGGGCGATGGCATG
GAGATTATAGGGAGGAGTCaatggagggacggaggcagggagagagcgtG
GAGAACAACGTGATCCTGGCTAAGATCGAAGAGATGACAGGGACGAGGAT
CTTGGTGGCGCCCCATGATGGAATGGGGGTGCGTCGGTGTTTCCTGCTGA
TGGGCGAAGAGGAGTTGGTGACACGAGCGCTAACTTTGTTACAGGGCGCC
GTCGCGCAAAAGATATGCCCGAGtcgaaaggaaggggcggagataCTGGc
gaagatgggagggagggagggaggactaGGCAGGGACGAAAGATTGGAGG
AGATCCGCCTCGAGTTGCGGGATAAACACAAGctgaggatgatggaggtg
CAGGTGAGTGGATGGGAATGAATGCGTCGATGCGCCTCCCCGTTTGGAAT
GATTCCTCCCGAGGAATCAGAATGCAACGACGTAGGGGAAGGCCATGGCA
TAGAAGCAAGAGAAGCTGAGTTACAGCCCGCAGTTGACAGCTTGGCCTCA
AGCATGTCGTACCATCCTTTAGTAGAAGACCCCGAATGGAAACTCTTCGC
GTCGTTCGACAGTCTGGATTTCAGTTTTGTGGGGGGAGCTATCGGAGTCT
GTCGGCCAGTACCACAAGAGTTTTCCCCGATTTACAAAGCCACCCTGACG
ATGCTGAAGCCCACGATCCTCCGACTCACTGGCCTTGGAtctctctttct
tggcaAAAAAGAGCGCGAAGTCATGCTTTGGGACACACCAATTTCCCCCA
CAGCCGCTTCCGTCAGTcgaccatcctcctcccgccctcccgcagACAAT
TTGCGATTAGCGGATCAGATGCTTCGTCTCGCCTTGGTGGGGAAGCCACG
CCGTTACTCCTACTGGTATTTGCAATATTTCACAACTACGGACGTCGGTA
AATTACTGGGGCGATGGCATGGAGATTATAGGGAGGAGTCaatggaggga
cggaggcagggagagagcgtGGAGAACAACGTGATCCTGGCTAAGATCGA
AGAGATGACAGGGACGAGGATCTTGGTGGCGCCCCATGATGGAATGGGGG
TGCGTCGGTGTTTCCTGCTGATGGGCGAAGAGGAGTTGGTGACACGAGCG
CTAACTTTGTTACAGGGCGCCGTCGCGCAAAAGATATGCCCGAGtcgaaa
ggaaggggcggagataCTGGcgaagatgggagggagggagggaggactaG
GCAGGGACGAAAGATTGGAGGAGATCCGCCTCGAGTTGCGGGATAAACAC
AAGctgaggatgatggaggtgCAGGTGAGTGGATGGGAATGA back to top
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