EWM20888.1, cds9787 (CDS) Nannochloropsis gaditana

Overview
NameEWM20888.1
Unique Namecds9787
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:180635..180883 +
Alignment locationKK037256.1:181044..181715 +

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Properties
Property NameValue
Protein idEWM20888.1
ProductOvarian tumor, otubain
Orig transcript idgnl|cribi|Naga_100201g11.6913.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:180635..180883 +
KK037256.1supercontigKK037256.1:181044..181715 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20888.1 vs. NCBI_GenBank
Match: gi|585100839|gb|EWM20888.1| (Ovarian tumor, otubain [Nannochloropsis gaditana])

HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0 
Query:    1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSGWE 306
            MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSGWE
Sbjct:    1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSGWE 306
[Close]
BLAST of EWM20888.1 vs. NCBI_GenBank
Match: gi|585100838|gb|EWM20887.1| (Ovarian tumor, otubain [Nannochloropsis gaditana])

HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 302/304 (99.34%), Postives = 302/304 (99.34%), Query Frame = 0 
Query:    1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSG 304
            MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQ  G
Sbjct:    1 MRRCASPFGMIPPEESECNDVGEGHGIEAREAELQPAVDSLASSMSYHPLVEDPEWKLFASFDSLDFSFVGGAIGVCRPVPQEFSPIYKATLTMLKPTILRLTGLGSLFLGKKEREVMLWDTPISPTAASVSRPSSSRPPADNLRLADQMLRLALVGKPRRYSYWYLQYFTTTDVGKLLGRWHGDYREESMEGRRQGESVENNVILAKIEEMTGTRILVAPHDGMGVRRCFLLMGEEELVTRALTLLQGAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDG 304
[Close]
BLAST of EWM20888.1 vs. NCBI_GenBank
Match: gi|553190080|ref|XP_005855122.1| (cre-duo-3 protein [Nannochloropsis gaditana CCMP526] >gi|422293941|gb|EKU21241.1| cre-duo-3 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 107.842 bits (268), Expect = 6.923e-25
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0 
Query:  249 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQVSG 304
            GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQ  G
Sbjct:    3 GAVAQKICPSRKEGAEILAKMGGREGGLGRDERLEEIRLELRDKHKLRMMEVQRDG 58
The following BLAST results are available for this feature:
BLAST of EWM20888.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100839|gb|EWM20888.1|0.000e+0100.00Ovarian tumor, otubain [Nannochloropsis gaditana][more]
gi|585100838|gb|EWM20887.1|0.000e+099.34Ovarian tumor, otubain [Nannochloropsis gaditana][more]
gi|553190080|ref|XP_005855122.1|6.923e-2596.43cre-duo-3 protein [Nannochloropsis gaditana CCMP52... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9818rna9818Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications