rna9808, rna9808 (mRNA) Nannochloropsis gaditana

Overview
Namerna9808
Unique Namerna9808
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1119
Alignment locationKK037256.1:159707..160598 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101411g1.2364.mrna
Orig protein idgnl|cribi|Naga_101411g1.2364
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:159707..160598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101411g1gene9523Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9808rna9808-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20897.1cds9777Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9808 ID=rna9808|Name=rna9808|organism=Nannochloropsis gaditana|type=mRNA|length=1119bp
CCCCCACCTCTTTTTCCAGTGCTTGTATGCCCCCTATTTCTCGTCGGCAG
GAAGCGGCGTCCAGATCATACCAAGGACATCTTTTTTCGTGTCAAATTGG
GATTGAGTTTCTATTGACGGGACTCAAAGTGGGGACATAAGCATGGCCGG
GTACAACCATTACTCCCTCGCGTCCTAATTTACCTTTCCATATGGCCCCG
CCTTCATGCCCTGAGTAGCATGCAAAGGCATTTACTAACCGTACACGATC
TCCCCAATTGTAATACACCTCGATGAGGGTGCCTTTCTGCGTAAGTATGA
ATGATCCCGCGCTCAAAGGAAACCTGCTCTGAGTTGAAGCTCTGAGAAGG
AGCCTCTGAGAAATACCTCACTCACGAGCGAGCTGTATATACGGAATGAG
CGGAAGAAGATGCATAAATACGCATGATATGCCCTTACTACGTAGTGTTC
TCAATAGTACCAGTAAGGGGCTTCTTTCGATACGGAGCTTTGACCTCTCT
CCTGTCCTCCCCCCTGGAGTCAGCCCCCTCGTTTCTCCGTCCCACGAAGA
GCCTCATGCCGTGGTCGCGACGTCCTCCCTTTTCTCCCACCGACCATGTA
GGTATCAGCATGTCAACAATAAAAGATGACGGCGACACAATGCCTCATCC
ACTCTCCTCGCAAGAGAATTTCGCCGCGAGCACAAACCCTAGCGACGACG
AATTCAGGGATCACGACTTGGACCATTACCTCCAGGTCGCCGAGTCGGCG
GCCCTGCAGGCGGGCAACTTCATCCGGGCATCTCTGGAGCGGCGGACAAG
TCTGGGTCTGACCGTGAACGACAAGGCCGCAGTCGGTGCCGCCCGCGTGG
ATTTGGTCACGGAGGTAGACCTGCAGGCAGAGGAGATCATCATCCCCTCC
ATCCGAAAGGCAGTGACGGGCCGGCACATCTTCGTGGGGGAGGAGTCCGC
CTTTTTGACCGGGACCCAGGCCTTGACCGACGACCCCCACTGGTTCGTCG
ACCCTGTGGACGGAACCACCAACTTCATCCATGGCTACCCTTTTGTGACG
GTGGGGAGGGCGGGAGGGAGGGCGCAGGCTGCGTCCTGGGGATGGGAGGG
CGGCGAGGAGGGAGTGTAG
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protein sequence of rna9808

>rna9808-protein ID=rna9808-protein|Name=rna9808|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MTTTEGEGSAVAPAPSKTASTATSTSSSSSPAPSATAVKPRVFTSRNLNP
TLQAVASKSEAQAPRVALPGSTSRLTVINKPFPSPEEPGPGPGENGERGK
GGGFRGRPSSWVDASLAASRASLGAPVGGGWRGKEGGRTEARGGGTEARE
AGSQGRLFPLPGPGPASTDGEGPRQADEGPLANYRSPQSKGDGPSSLPPS
LPSSLPPYDPSSSRAGQGKSGPPVERRTL
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mRNA from alignment at KK037256.1:159707..160598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9808 ID=rna9808|Name=rna9808|organism=Nannochloropsis gaditana|type=mRNA|length=892bp|location=Sequence derived from alignment at KK037256.1:159707..160598+ (Nannochloropsis gaditana)
GGAGTAGGCGGGTGTGCATCTTCATTGCTTAAAGTCGTGGAGGCTGCATT
AGTCTTACAACGATTTTGCTGTCTCATGTGTGTGACAGGGAGCCTCGATT
CCACCTGGACTTctgcttttctccccctccctccgctcccctcACGTTCC
CTGCCACCGTCCCTGTACTGCACAGGACCTTCCCACCATACGGTCAGGCT
TTAAATGACCACCACTGAGGGCGAAGGCAGTGCTGTGGCACCGGCACCCT
CAAAAACCGCTTCGACGGcgacttccacctcctcatcctcctccccggcc
ccctctGCCACCGCTGTCAAGCCGCGTGTATTCACCTCCCGGAACTTGAA
CCCCACTTTGCAAGCTGTCGCGTCGAAATCCGAAGCCCAAGCCCCCCGAG
TGGCCTTGCCAGGATCCACGTCGCGTCTGACAGTGATCAACAAACCGTTT
CCCAGTCCGGAGGAGCCAGGGCCGGGAccgggggaaaatggagagcgcgg
gaaaggcggagggtTTCGAGGAAGGCCCAGCAGTTGGGTCGACGCGTCCC
TGGCGGCGTCCAGGGCCAGCCTGGGGGCTCCtgtgggagggggatggagg
gggaaggagggggggcggacggaggccaggggcgggggtacggaggcgag
ggaggcaggctcCCAAGGGCGTTTGTTCCCGCTGCCAGGACCCGGGCCCG
CCTCTACGGACGGCGAGGGGCCCAGGCAGGCGGACGAAGGCCCGCTGGCG
AACTATCGGTCGCCGCAGTCCAAAGGAGatggcccttcctccctccctcc
ctccctcccttcctccctccctccctacgacccctcctcctcccgtgccg
GGCAGGGCAAGTCGGGGCCGCCTGTGGAAAGAAGGACCCTGC
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Coding sequence (CDS) from alignment at KK037256.1:159707..160598+

>rna9808 ID=rna9808|Name=rna9808|organism=Nannochloropsis gaditana|type=CDS|length=688bp|location=Sequence derived from alignment at KK037256.1:159707..160598+ (Nannochloropsis gaditana)
ATGACCACCACTGAGGGCGAAGGCAGTGCTGTGGCACCGGCACCCTCAAA
AACCGCTTCGACGGcgacttccacctcctcatcctcctccccggccccct
ctGCCACCGCTGTCAAGCCGCGTGTATTCACCTCCCGGAACTTGAACCCC
ACTTTGCAAGCTGTCGCGTCGAAATCCGAAGCCCAAGCCCCCCGAGTGGC
CTTGCCAGGATCCACGTCGCGTCTGACAGTGATCAACAAACCGTTTCCCA
GTCCGGAGGAGCCAGGGCCGGGAccgggggaaaatggagagcgcgggaaa
ggcggagggtTTCGAGGAAGGCCCAGCAGTTGGGTCGACGCGTCCCTGGC
GGCGTCCAGGGCCAGCCTGGGGGCTCCtgtgggagggggatggaggggga
aggagggggggcggacggaggccaggggcgggggtacggaggcgagggag
gcaggctcCCAAGGGCGTTTGTTCCCGCTGCCAGGACCCGGGCCCGCCTC
TACGGACGGCGAGGGGCCCAGGCAGGCGGACGAAGGCCCGCTGGCGAACT
ATCGGTCGCCGCAGTCCAAAGGAGatggcccttcctccctccctccctcc
ctcccttcctccctccctccctacgacccctcctcctcccgtgccgGGCA
GGGCAAGTCGGGGCCGCCTGTGGAAAGAAGGACCCTGC
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Synonyms
Publications