rna9784, rna9784 (mRNA) Nannochloropsis gaditana

Overview
Namerna9784
Unique Namerna9784
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length618
Alignment locationKK037256.1:102996..103814 +

Link to JBrowse

Properties
Property NameValue
ProductMajor facilitator superfamily
Orig transcript idgnl|cribi|Naga_100061g10.8551.mrna
Orig protein idgnl|cribi|Naga_100061g10.8551
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:102996..103814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100061g10gene9500Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9784rna9784-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20918.1cds9753Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9784 ID=rna9784|Name=rna9784|organism=Nannochloropsis gaditana|type=mRNA|length=618bp
ATGAAAACAAGGGGTCCGGACAAAGGCACTAGCAGCAGTGAAGGCCCTGA
GCGGGGAGTAGAACTAGAGAATGACGAACGGGGTATGTCTGATACCTACC
AAGGACCTGTACCCAACACTTCCACAAAACCTTTGTTATTGCCGCTTTCG
ATGACAAGTTTGGACGTTAACTCCGCTGCTAGTAAACACAAGGGAGACGC
ATTGATTTTATCAGGGGAACCACATACTGATCTGTCACCTGCTATGGCCG
TGGCCGAGCATAAAGGCACGGCGAGGTATCGGGAACTTCTGTACGTCTAC
CTGGCCATTGTAGCGGACGCTGTCACTTCCAACGTGATGGCACCCTATGC
CCAAGAATGGGTACTGCATACATTTCAAACGAATAACATCGGACTCTACT
CTGGCATTTTGGTGGGCTCCATGGCCTTCGCCCGGGCCCTGTCATCACCT
TTCTTCGGCTGGCTTTCGGACAGCATAGGGCGACGTTTAGACTGTGGCGA
CCGCCGCTATTGGAGATTTGGCCACAGGGCAGGAGCGAAAGGTGGCCTTC
GGAGACAGCAAAGCAGCCTCGCAGGTTGCCAAGATTCTCACATCCATGAT
CGGCGGCTTTACCTTTAA
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protein sequence of rna9784

>rna9784-protein ID=rna9784-protein|Name=rna9784|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MEPTPVTAILPRGDRTFQGRPTLFQGVRYVLSSPRLVRLILVLSLTSFLN
GGLFLSVKLLTLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRL
GPKRANMLGLLGTSLGVLVLPLADAFVEARTWALWTCTVASVLVFASSYM
LVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQE
ARLPVLTFLFLTCGYLVSFLALRGVPRAALEGECNLLNVEGVDFPPIRLD
EITIVCKECLYFKKWLQFKADE
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mRNA from alignment at KK037256.1:102996..103814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9784 ID=rna9784|Name=rna9784|organism=Nannochloropsis gaditana|type=mRNA|length=819bp|location=Sequence derived from alignment at KK037256.1:102996..103814+ (Nannochloropsis gaditana)
ATGGAGCCCACGCCCGTCACTGCCATCTTACCGCGCGGGGACCGCACCTT
CCAGGGGCGCCCGACGCTTTTCCAGGGCGTCCGCTACGTCCTCTCGTCCC
CCCGTCTTGTGCGGCTCATTCtggtcctctccctcacatCATTCTTGAAC
GGcgggctcttcctctccgtgAAGCTGCTCACCCTCCACTCGGAAGGCTT
CGACATGCAGCCCCGCGagtcctccaccatccttcttctcttcggCTGCT
GGGCCATGGCCTTTAACGCTTGCCTCTTCCGACCCCTCGTCCGTCGCCTG
GGCCCCAAGCGGGCCAACATGCTGGGTCTCCTCGGCACAAgcctcggcgt
cctcgtcctaCCCCTCGCCGACGCCTTCGTGGAGGCGCGCACCTGGGCGC
TGTGGACCTGTACTGTCGCCAGCGTCCTTGTCTTCGCTTCGAGCTACATG
CTCGTCAACAGCCTCCTGGTTGGCTTCATATCCGCGCACGCCTCCCCCAG
CATGCAGGGGATCACCCAGGGTCTTGCGGTCTCCCTGAGCTCCAGCCTCT
CAGGACTCGAGCCGGTCGTTTTAGGCTCAGTGGCAAACGCGGCGCAGGAG
GCGAGACTCCCGGTCTTGACTTTCTTGTTCCTCACTTGTGGGTACTTGGT
ATCATTCCTAGCCCTCAGAGGTGTTCCACGGGCTGCGCTTGAAGGGGAGT
GTAATTTATTGAATGTCGAGGGTGTTGATTTTCCCCCCATCAGACTCGAT
GAAATAACAATTGTATGTAAAGAATGCTTGTATTTCAAGAAATGGCTACA
ATTTAAAGCTGACGAATAA
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Coding sequence (CDS) from alignment at KK037256.1:102996..103814+

>rna9784 ID=rna9784|Name=rna9784|organism=Nannochloropsis gaditana|type=CDS|length=819bp|location=Sequence derived from alignment at KK037256.1:102996..103814+ (Nannochloropsis gaditana)
ATGGAGCCCACGCCCGTCACTGCCATCTTACCGCGCGGGGACCGCACCTT
CCAGGGGCGCCCGACGCTTTTCCAGGGCGTCCGCTACGTCCTCTCGTCCC
CCCGTCTTGTGCGGCTCATTCtggtcctctccctcacatCATTCTTGAAC
GGcgggctcttcctctccgtgAAGCTGCTCACCCTCCACTCGGAAGGCTT
CGACATGCAGCCCCGCGagtcctccaccatccttcttctcttcggCTGCT
GGGCCATGGCCTTTAACGCTTGCCTCTTCCGACCCCTCGTCCGTCGCCTG
GGCCCCAAGCGGGCCAACATGCTGGGTCTCCTCGGCACAAgcctcggcgt
cctcgtcctaCCCCTCGCCGACGCCTTCGTGGAGGCGCGCACCTGGGCGC
TGTGGACCTGTACTGTCGCCAGCGTCCTTGTCTTCGCTTCGAGCTACATG
CTCGTCAACAGCCTCCTGGTTGGCTTCATATCCGCGCACGCCTCCCCCAG
CATGCAGGGGATCACCCAGGGTCTTGCGGTCTCCCTGAGCTCCAGCCTCT
CAGGACTCGAGCCGGTCGTTTTAGGCTCAGTGGCAAACGCGGCGCAGGAG
GCGAGACTCCCGGTCTTGACTTTCTTGTTCCTCACTTGTGGGTACTTGGT
ATCATTCCTAGCCCTCAGAGGTGTTCCACGGGCTGCGCTTGAAGGGGAGT
GTAATTTATTGAATGTCGAGGGTGTTGATTTTCCCCCCATCAGACTCGAT
GAAATAACAATTGTATGTAAAGAATGCTTGTATTTCAAGAAATGGCTACA
ATTTAAAGCTGACGAATAA
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Synonyms
Publications