EWM20918.1, cds9753 (CDS) Nannochloropsis gaditana

Overview
NameEWM20918.1
Unique Namecds9753
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037256.1:102996..103814 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20918.1
ProductMajor facilitator superfamily
Orig transcript idgnl|cribi|Naga_100061g10.8551.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:102996..103814 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of EWM20918.1 vs. NCBI_GenBank
Match: gi|585100874|gb|EWM20918.1| (Major facilitator superfamily [Nannochloropsis gaditana])

HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MEPTPVTAILPRGDRTFQGRPTLFQGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKLLTLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLADAFVEARTWALWTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQEARLPVLTFLFLTCGYLVSFLALRGVPRAALEGECNLLNVEGVDFPPIRLDEITIVCKECLYFKKWLQFKADE 272
            MEPTPVTAILPRGDRTFQGRPTLFQGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKLLTLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLADAFVEARTWALWTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQEARLPVLTFLFLTCGYLVSFLALRGVPRAALEGECNLLNVEGVDFPPIRLDEITIVCKECLYFKKWLQFKADE
Sbjct:    1 MEPTPVTAILPRGDRTFQGRPTLFQGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKLLTLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLADAFVEARTWALWTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQEARLPVLTFLFLTCGYLVSFLALRGVPRAALEGECNLLNVEGVDFPPIRLDEITIVCKECLYFKKWLQFKADE 272          
BLAST of EWM20918.1 vs. NCBI_GenBank
Match: gi|1160558981|ref|XP_020432042.1| (hypothetical protein PPL_06742 [Polysphondylium pallidum PN500] >gi|281205733|gb|EFA79922.1| hypothetical protein PPL_06742 [Polysphondylium pallidum PN500])

HSP 1 Score: 79.7221 bits (195), Expect = 2.548e-13
Identity = 56/204 (27.45%), Postives = 100/204 (49.02%), Query Frame = 0
Query:   18 QGRPTLFQGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKL---LTLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLA-DAFVEARTWALWTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQEARLPVLTFLFLTCGYLV 217
            Q   +L +G+R +    +++ L+L+ S+ SF NGGL LS  L   L++   G  M   E+  I  + G     F    F+ L + +G K+  +LG +   +G++V PL    ++      +W      V + +  +M    ++ G ++  A P +QG+TQG + SL+S L    P + G++   +    +P L F  L+  YL+
Sbjct:  301 QKDFSLIEGLRILSKDKKIMMLLLLGSVNSFSNGGLLLSFVLFASLSIEHRGLGMDASENGIIFTILGFVGFLFQITFFKRLSKSIGLKKQYLLGTVLLCIGMMVFPLTYTGYLMQGKAMVWVLICIIVPLTSIGFMQCLPIVGGMVANAAKPELQGLTQGTSQSLNSLLRSFGPAISGAIFTLSVTNSIPFLLFAILSFTYLI 504          
BLAST of EWM20918.1 vs. NCBI_GenBank
Match: gi|831777862|ref|XP_012755235.1| (hypothetical protein SAMD00019534_053100 [Acytostelium subglobosum LB1] >gi|735855867|dbj|GAM22135.1| hypothetical protein SAMD00019534_053100 [Acytostelium subglobosum LB1])

HSP 1 Score: 75.8702 bits (185), Expect = 6.679e-12
Identity = 54/199 (27.14%), Postives = 100/199 (50.25%), Query Frame = 0
Query:   23 LFQGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKL---LTLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLA--DAFVEARTWALWTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQEARLPVLTFLFLTCGYL 216
            L++G++ +    ++V L+++ S+ SF NGGL L+  L   L++   G  M P E+  I  + G +   F    F+ L R LG KR  ++G +   LG++  PL      ++ +   +W   +  V + +  +M    ++ G I+  + P +QG+TQG A S +S L    P + G++   + +  +  L F  L+  Y+
Sbjct:  376 LWEGLKSMAKDRKIVMLLILGSVNSFNNGGLLLAFVLFSSLSIEHRGLGMDPFENGIIFSVLGFFGFIFQITFFKRLSRTLGLKRQYLMGSMLLCLGMMTFPLTFMGYLIQGKA-TVWVILMIIVPITSVGFMQCLPIVGGMIANASRPELQGLTQGTAQSANSLLRSFGPAISGAIFTFSIKYSVSWLLFFVLSVIYV 573          
BLAST of EWM20918.1 vs. NCBI_GenBank
Match: gi|330802937|ref|XP_003289468.1| (hypothetical protein DICPUDRAFT_153859 [Dictyostelium purpureum] >gi|325080469|gb|EGC34024.1| hypothetical protein DICPUDRAFT_153859 [Dictyostelium purpureum])

HSP 1 Score: 75.0998 bits (183), Expect = 1.288e-11
Identity = 53/197 (26.90%), Postives = 100/197 (50.76%), Query Frame = 0
Query:   25 QGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKL---LTLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLAD-AFVEARTWALWTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQEARLPVLTFLFLTCGYLV 217
             G+R +++   ++ LI+V  L S+ NGGL LS+ L   L++  +G   +P  +  I  + G +   +   LF+ L   +G KR   +G++  S+G+ + PL    ++++ T  +W     SV + +  +M    L+   I       +QG+TQG   S++S L    P + G++ + +    +P L F+ L+  Y+V
Sbjct:  394 DGMRMIINDRAVLLLIVVGGLNSYSNGGLLLSLVLFSALSIDLKGLGFEPSGTGIIFTILGFFGFVWQVTLFKKLSLTIGLKRQFTMGMILLSIGMALFPLTYVGYIKSGTTMVWVLIFISVPIISVGFMNGLPLVSAMIGTVCRSEIQGLTQGTTQSINSMLRSFGPTLSGALFSWSSNRSIPWLLFINLSIIYVV 590          
BLAST of EWM20918.1 vs. NCBI_GenBank
Match: gi|470239490|ref|XP_004351714.1| (hypothetical protein DFA_09814 [Dictyostelium fasciculatum] >gi|328866611|gb|EGG14994.1| hypothetical protein DFA_09814 [Dictyostelium fasciculatum])

HSP 1 Score: 74.3294 bits (181), Expect = 1.939e-11
Identity = 50/176 (28.41%), Postives = 88/176 (50.00%), Query Frame = 0
Query:   22 TLFQGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKL---LTLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLA-DAFVEARTWALWTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGS 193
            TL +G++ +     LV L ++ S+ S+ NGGL LS+ L   L     G  M P E+  I  + G +   F    F+ L R++G K+  +LG +  ++G+ + PL    ++      +W   +  V + +  +M    ++ G I+  +   +QG+TQG A SL+S L    P + G+
Sbjct:  362 TLKEGLKLLAQDHSLVLLFIIGSINSYNNGGLLLSIVLYASLPTDKHGLGMDPSENGIIFSVLGLFGFLFQITFFKKLSRKIGLKKQYLLGSMLLAVGMAIFPLTFMGYIVQGKAMVWVLLMIIVPINSIGFMQCLPIVQGMIANASRTELQGLTQGTAQSLNSLLRSFGPTISGA 537          
BLAST of EWM20918.1 vs. NCBI_GenBank
Match: gi|1013939686|gb|KYQ93375.1| (hypothetical protein DLAC_06052 [Dictyostelium lacteum])

HSP 1 Score: 73.559 bits (179), Expect = 3.392e-11
Identity = 55/211 (26.07%), Postives = 99/211 (46.92%), Query Frame = 0
Query:   22 TLFQGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKLL---TLHSEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLA-DAFVEARTWALWTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQEARLPVLTFLFLTCGYLVSFLALRGVPRA 228
            T  QG+R ++    LV L+++  + SF NGGL L + L     +   G    P ++  +  + G     F    F+ L   +G KR  +LG+    +G+ + PL    ++      +W      + V +  +M    ++ G ++  ++P +QG+TQG A SLSS L    P V G +  A+ +  +  L F+ L+  Y+   +A   +P +
Sbjct:  386 TFTQGMRVIIQDRGLVLLLIIGGVNSFNNGGLLLGIVLFCSTAITDRGLGFGPPQTGVVFTILGFAGFFFQILFFKRLSASIGLKRQYILGMALLCVGIALFPLTFTGYLIQGEALVWVWIGIIIPVISIGFMQGLPIVQGMVANASNPQIQGLTQGTAQSLSSFLRAFGPAVSGGIFTASIKNNITWLLFIVLSVLYVFIAIASLWIPES 596          
BLAST of EWM20918.1 vs. NCBI_GenBank
Match: gi|66806743|ref|XP_637094.1| (hypothetical protein DDB_G0287843 [Dictyostelium discoideum AX4] >gi|60465483|gb|EAL63568.1| hypothetical protein DDB_G0287843 [Dictyostelium discoideum AX4])

HSP 1 Score: 60.4622 bits (145), Expect = 8.078e-7
Identity = 55/210 (26.19%), Postives = 105/210 (50.00%), Query Frame = 0
Query:   11 PRGDRTFQGRPTLFQGVRYVLSSPRLVRLILVLSLTSFLNGGLFLSVKLLTLH---SEGFDMQPRESSTILLLFGCWAMAFNACLFRPLVRRLGPKRANMLGLLGTSLGVLVLPLADAFVEARTWAL-WTCTVASVLVFASSYMLVNSLLVGFISAHASPSMQGITQGLAVSLSSSLSGLEPVVLGSVANAAQEARLPVLTFLFLTCGYL 216
            P+ D+TF+      +G++ +L    L+ L++V  L SF NGGL LS+ L +     + G  +    S  I  + G +   +   LF+ +  R G KR   +G++  S+G+ + PL+      + + L W      V + +  +M    ++ G ++  ++P +QG+TQG   S++S L    P + G++ +A+     P + F+ L+  Y+
Sbjct:  405 PKKDKTFK------EGMQIILKDRGLLLLMVVGGLNSFNNGGLLLSLVLFSSAPTVNRGLGLDSMGSGIIFTILGFFGFLWQILLFKKVSGRFGLKRQYTVGMILLSIGMALFPLSYVAWNIQGYPLVWVTIGIVVPIISVGFMSGLPIVQGMVANCSNPEIQGLTQGSTQSINSMLRSFGPAISGAIFSASTAHSQPWVLFIVLSIIYV 608          
The following BLAST results are available for this feature:
BLAST of EWM20918.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585100874|gb|EWM20918.1|0.000e+0100.00Major facilitator superfamily [Nannochloropsis gad... [more]
gi|1160558981|ref|XP_020432042.1|2.548e-1327.45hypothetical protein PPL_06742 [Polysphondylium pa... [more]
gi|831777862|ref|XP_012755235.1|6.679e-1227.14hypothetical protein SAMD00019534_053100 [Acytoste... [more]
gi|330802937|ref|XP_003289468.1|1.288e-1126.90hypothetical protein DICPUDRAFT_153859 [Dictyostel... [more]
gi|470239490|ref|XP_004351714.1|1.939e-1128.41hypothetical protein DFA_09814 [Dictyostelium fasc... [more]
gi|1013939686|gb|KYQ93375.1|3.392e-1126.07hypothetical protein DLAC_06052 [Dictyostelium lac... [more]
gi|66806743|ref|XP_637094.1|8.078e-726.19hypothetical protein DDB_G0287843 [Dictyostelium d... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9784rna9784Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications