rna9727, rna9727 (mRNA) Nannochloropsis gaditana

Overview
Namerna9727
Unique Namerna9727
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length779
Alignment locationKK037255.1:272702..274001 -

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Properties
Property NameValue
ProductProtein of unknown function DUF2064
Orig transcript idgnl|cribi|Naga_100442g1.7159.mrna
Orig protein idgnl|cribi|Naga_100442g1.7159
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:272702..274001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100442g1gene9446Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9727rna9727-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20974.1cds9696Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9727 ID=rna9727|Name=rna9727|organism=Nannochloropsis gaditana|type=mRNA|length=779bp
AGAATGTTTGACATGTGTGCGGGTGTTTTGGAATAAAAGGGGGGTGATTG
CACTCAAAAGTTCTCCCTTTTCAGGCCGTGGTTTTACGCTCCTGTTCAAC
CGCCGTGCTGCCAGTTGTGGCCTCCCCCATGACAAGCGGCTACCGAAGGC
GTGCAAGTCAAATAATGCAATGGAAGGCATGATGTCATGTGGATGGAAGA
CTGACAAACCCTCAGCATCGCTCTCTCCCTTCTTGTGTTTTTCCCCCTGC
TCAAGACTCCTGACACCGCCCCTCGCCCAGCCCTAGCCCTATCTCCCATC
GCCCGCTCCTCGCGACAGCACGAGCATTGCTATGCGCAGCCTTCGGAAAA
GAAGGCGGAGGGGCGATCACTCAGCTCCTCGTCTCCTCCTCCTCCTCTGT
CTCGTCCTTCTCCTCCTCCTCCCCTCCCTCTCCTTCCTACCCTTTCCACC
CTGTACGCCCTCCTCCCTCCTCGCTTCTCCCCCCCCCACCCGTCCCTCCG
CCCACTCCGATGCAAGCCCACCCACGCCGCCCTCCCTCCCTCCTTCTCCG
CTACCGCGGGCCCTCTACATCCATCTCCCGTTCTGTCGGCGTCGGTGCTT
CTATTGCGACTTTCCCATCAAGGTGGTGGGAGACGGCGCCCATGCGGCCG
ACGAATACAGCGAGGCCTACATAAACCTGCTCCTGCGGGAGATGCAGGCT
GCCTACAGAAGGACAGCGGAGGACGGTGGGAGGGCGGAAGGAGGGGGCGA
GGGAGGGCGGGAGGGAGGGAGGGAAGGAG
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protein sequence of rna9727

>rna9727-protein ID=rna9727-protein|Name=rna9727|organism=Nannochloropsis gaditana|type=polypeptide|length=394bp
MRTRPPAPTPVLLVLTISHAVCAKRNSGWLEPWPRKIVQQDCRGYFPKTT
DLVLPASVATSHYSSLWTATALPSLSMVINSISAARPPLLDRGNVPPIPP
ARDVGWGGDGRPERNDAYHDKIYGQHTPASLAGSATPSLAPRVYLFTKYP
VPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQD
ARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLA
AATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEE
EEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAES
LGLKVKLLEALSDMDRPQDLALWRPPPLTSVVIPVVNEAEEGGR
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mRNA from alignment at KK037255.1:272702..274001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9727 ID=rna9727|Name=rna9727|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp|location=Sequence derived from alignment at KK037255.1:272702..274001- (Nannochloropsis gaditana)
ATGAGGACCCGCCCTCCGGCGCCAACACCGGTCCTTCTCGTGCTGACTAT
TTCCCATGCAGTCTGCGCCAAGAGAAATAGTGGCTGGCTCGAGCCCTGGC
CGCGCAAGATCGTACAGCAGGATTGCAGAGGCTACTTTCCAAAGACGACA
GACCTAGTGCTTCCTGCCTCAGTGGCTACATCCCATTATTCCTCCCTCTG
GACAGCCACAGCACTGCCTTCACTCAGCATGGTGATAAATAGTATCTCCG
CTGCCCGCCCTCCTCTCCTCGACCGTGGTAATGTCCCGCCCATACCACCC
GCGCGTGACGTCGGGTGGGGGGGAGATGGGCGTCCTGAACGCAACGATGC
TTATCACGACAAAATCTACGGACAGCACACGCCCGCCTCCCTAGCCGGGT
CAGCAACACCATCCTTGGCTCCTCGAGTGTATTTATTCACGAAATACCCG
GTGCCCGGCCAGGTCAAGACCAGGATGATCCCCGCCTTGGGGCGTGAAGG
GGCAATGAGGCTGCACCGCCGCTTGGTCCACCGGACCTTGGCGTCTCTGG
ATGCTTTTCGGAGGCAAGGGTGCCCGGGCCGCAGAAAGAGGGGCCAGGAC
GCACGCGGGGAAGGGGCGGTCGTGGATTGCCGCGTCCGGTACGACGATGG
CTTGACCGGACAGGGCGGGATGGCCTTGATGCAGGCGTGGCTGGGGATGG
ACTGGATCTACGAGGCGCAAGGCCCCGGGGATTTGGGGGCTCGCCTGGCC
GCCGCGACAGCCATGGCCGACGGGGGCGAGGAAGGGGTCGGGTCTGTGGT
CGTGGTCGGGAGCGACTGCCCCTTCCTCCGTCCCCGGCACCTGCGGGCGG
CAATCCGCGCCCTGTCCGACACCCAAGAGGGCGGAGGAGAGGAGGAGGAG
GAGGAAGGGGGGCATGACCTGGTGCTTGGTCCGGCCACGGACGGGGGGTA
TTGGTTGGTAGGCCTCCGTCGGCCCTGCCCCGCCCTCTTTAGGGACGTGG
ATTGGGGCACCTCGCGCGTGCTGAACCAGACGTTGGCCCGCGCCGAGAGC
CTGGGGTTGAAGGTGAAGCTTTTGGAGGCGCTCTCCGACATGGACCGGCC
CCAAGACCTGGCCCTCTGGCGCCCTCCGCCCCTGACCTCGGTGGTAATCC
CTGTGGTGAACGAGGCGGAGTGCTTGACCGCCACCTTGGCGGCAGTCTTC
AACGGCACGAGCACGCATCGGGCGGCGGCGACGGCCGGGGCGGACAGGAC
CGGGGACAACACGGGAAGGGGGCGGGGCTGGAAGGGAGGGAGGAAGGTGA
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Coding sequence (CDS) from alignment at KK037255.1:272702..274001-

>rna9727 ID=rna9727|Name=rna9727|organism=Nannochloropsis gaditana|type=CDS|length=2370bp|location=Sequence derived from alignment at KK037255.1:272702..274001- (Nannochloropsis gaditana)
GGAGGGAGGAAGGTGAATGAGGACCCGCCCTCCGGCGCCAACACCGGTCC
TTCTCGTGCTGACTATTTCCCATGCAGTCTGCGCCAAGAGAAATAGTGGC
TGGCTCGAGCCCTGGCCGCGCAAGATCGTACAGCAGGATTGCAGAGGCTA
CTTTCCAAAGACGACAGACCTAGTGCTTCCTGCCTCAGTGGCTACATCCC
ATTATTCCTCCCTCTGGACAGCCACAGCACTGCCTTCACTCAGCATGGTG
ATAAATAGTATCTCCGCTGCCCGCCCTCCTCTCCTCGACCGTGGTAATGT
CCCGCCCATACCACCCGCGCGTGACGTCGGGTGGGGGGGAGATGGGCGTC
CTGAACGCAACGATGCTTATCACGACAAAATCTACGGACAGCACACGCCC
GCCTCCCTAGCCGGGTCAGCAACACCATCCTTGGCTCCTCGAGTGTATTT
ATTCACGAAATACCCGGTGCCCGGCCAGGTCAAGACCAGGATGATCCCCG
CCTTGGGGCGTGAAGGGGCAATGAGGCTGCACCGCCGCTTGGTCCACCGG
ACCTTGGCGTCTCTGGATGCTTTTCGGAGGCAAGGGTGCCCGGGCCGCAG
AAAGAGGGGCCAGGACGCACGCGGGGAAGGGGCGGTCGTGGATTGCCGCG
TCCGGTACGACGATGGCTTGACCGGACAGGGCGGGATGGCCTTGATGCAG
GCGTGGCTGGGGATGGACTGGATCTACGAGGCGCAAGGCCCCGGGGATTT
GGGGGCTCGCCTGGCCGCCGCGACAGCCATGGCCGACGGGGGCGAGGAAG
GGGTCGGGTCTGTGGTCGTGGTCGGGAGCGACTGCCCCTTCCTCCGTCCC
CGGCACCTGCGGGCGGCAATCCGCGCCCTGTCCGACACCCAAGAGGGCGG
AGGAGAGGAGGAGGAGGAGGAAGGGGGGCATGACCTGGTGCTTGGTCCGG
CCACGGACGGGGGGTATTGGTTGGTAGGCCTCCGTCGGCCCTGCCCCGCC
CTCTTTAGGGACGTGGATTGGGGCACCTCGCGCGTGCTGAACCAGACGTT
GGCCCGCGCCGAGAGCCTGGGGTTGAAGGTGAAGCTTTTGGAGGCGCTCT
CCGACATGGACCGGCCCCAAGACCTGGCCCTCTGGCGCCCTCCGCCCCTG
ACCTCGGTGGTAATCCCTGTGGTGAACGAGGCGGAGGAGGGAGGAAGGTG
AATGAGGACCCGCCCTCCGGCGCCAACACCGGTCCTTCTCGTGCTGACTA
TTTCCCATGCAGTCTGCGCCAAGAGAAATAGTGGCTGGCTCGAGCCCTGG
CCGCGCAAGATCGTACAGCAGGATTGCAGAGGCTACTTTCCAAAGACGAC
AGACCTAGTGCTTCCTGCCTCAGTGGCTACATCCCATTATTCCTCCCTCT
GGACAGCCACAGCACTGCCTTCACTCAGCATGGTGATAAATAGTATCTCC
GCTGCCCGCCCTCCTCTCCTCGACCGTGGTAATGTCCCGCCCATACCACC
CGCGCGTGACGTCGGGTGGGGGGGAGATGGGCGTCCTGAACGCAACGATG
CTTATCACGACAAAATCTACGGACAGCACACGCCCGCCTCCCTAGCCGGG
TCAGCAACACCATCCTTGGCTCCTCGAGTGTATTTATTCACGAAATACCC
GGTGCCCGGCCAGGTCAAGACCAGGATGATCCCCGCCTTGGGGCGTGAAG
GGGCAATGAGGCTGCACCGCCGCTTGGTCCACCGGACCTTGGCGTCTCTG
GATGCTTTTCGGAGGCAAGGGTGCCCGGGCCGCAGAAAGAGGGGCCAGGA
CGCACGCGGGGAAGGGGCGGTCGTGGATTGCCGCGTCCGGTACGACGATG
GCTTGACCGGACAGGGCGGGATGGCCTTGATGCAGGCGTGGCTGGGGATG
GACTGGATCTACGAGGCGCAAGGCCCCGGGGATTTGGGGGCTCGCCTGGC
CGCCGCGACAGCCATGGCCGACGGGGGCGAGGAAGGGGTCGGGTCTGTGG
TCGTGGTCGGGAGCGACTGCCCCTTCCTCCGTCCCCGGCACCTGCGGGCG
GCAATCCGCGCCCTGTCCGACACCCAAGAGGGCGGAGGAGAGGAGGAGGA
GGAGGAAGGGGGGCATGACCTGGTGCTTGGTCCGGCCACGGACGGGGGGT
ATTGGTTGGTAGGCCTCCGTCGGCCCTGCCCCGCCCTCTTTAGGGACGTG
GATTGGGGCACCTCGCGCGTGCTGAACCAGACGTTGGCCCGCGCCGAGAG
CCTGGGGTTGAAGGTGAAGCTTTTGGAGGCGCTCTCCGACATGGACCGGC
CCCAAGACCTGGCCCTCTGGCGCCCTCCGCCCCTGACCTCGGTGGTAATC
CCTGTGGTGAACGAGGCGGA
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Synonyms
Publications