EWM20986.1, cds9689 (CDS) Nannochloropsis gaditana

Overview
NameEWM20986.1
Unique Namecds9689
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:247161..247250 -
Alignment locationKK037255.1:246820..246884 -
Alignment locationKK037255.1:245982..246220 -
Alignment locationKK037255.1:245574..245624 -
Alignment locationKK037255.1:245070..245182 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20986.1
Productsplicing arginine serine-rich 2
Orig transcript idgnl|cribi|Naga_100487g3.5517.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:247161..247250 -
KK037255.1supercontigKK037255.1:246820..246884 -
KK037255.1supercontigKK037255.1:245982..246220 -
KK037255.1supercontigKK037255.1:245574..245624 -
KK037255.1supercontigKK037255.1:245070..245182 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|585100981|gb|EWM20986.1| (splicing arginine serine-rich 2 [Nannochloropsis gaditana])

HSP 1 Score: 353.599 bits (906), Expect = 5.795e-123
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query:    1 MGDNGENGEPNRDGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRDGGGGHRGGDEAAAATDDDRDRRGGYYGGGGGGYDDRGGRGYGGGYPDRRDRSRSPPRRRSRSRSPPRYD 185
            MGDNGENGEPNRDGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRDGGGGHRGGDEAAAATDDDRDRRGGYYGGGGGGYDDRGGRGYGGGYPDRRDRSRSPPRRRSRSRSPPRYD
Sbjct:    1 MGDNGENGEPNRDGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDHFRDGGGGHRGGDEAAAATDDDRDRRGGYYGGGGGGYDDRGGRGYGGGYPDRRDRSRSPPRRRSRSRSPPRYD 185          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|194761376|ref|XP_001962905.1| (uncharacterized protein Dana_GF15672 [Drosophila ananassae] >gi|190616602|gb|EDV32126.1| uncharacterized protein Dana_GF15672 [Drosophila ananassae])

HSP 1 Score: 114.39 bits (285), Expect = 1.331e-28
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 0
Query:   13 DGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
            +GGG  G R PP+IDGM +LK+DN+ Y  T EDLR +F+  GE+GD+YIPRD  + ++RGFAFVR+++K DAE ALE +DG    GR+LRV +A   RP
Sbjct:    3 NGGGLGGARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 101          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|929355526|ref|XP_014086923.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Bactrocera oleae])

HSP 1 Score: 113.62 bits (283), Expect = 2.133e-28
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0
Query:   14 GGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
            GGG    R PP+IDGM +LK+DN+ Y  T EDLR +F+  GE+GD+YIPRD  + ++RGFAFVR+++K DAE ALE +DG    GR+LRV +A   RP
Sbjct:    3 GGGNNSARPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 100          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|751801113|ref|XP_011210585.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Bactrocera dorsalis])

HSP 1 Score: 113.62 bits (283), Expect = 2.216e-28
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 0
Query:   13 DGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
             GGG    R PP+IDGM +LK+DN+ Y  T EDLR +F+  GE+GD+YIPRD  + ++RGFAFVR+++K DAE ALE +DG    GR+LRV +A   RP
Sbjct:    2 SGGGNNSARPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 100          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|1098676648|ref|XP_018798400.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Bactrocera latifrons])

HSP 1 Score: 113.235 bits (282), Expect = 2.562e-28
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0
Query:   14 GGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
            GGG    R PP+IDGM +LK+DN+ Y  T EDLR +F+  GE+GD+YIPRD  + ++RGFAFVR+++K DAE ALE +DG    GR+LRV +A   RP
Sbjct:    3 GGGNNSARPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 100          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|498942705|ref|XP_004521759.1| (serine/arginine-rich splicing factor 2 [Ceratitis capitata])

HSP 1 Score: 113.235 bits (282), Expect = 2.733e-28
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0
Query:   14 GGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
            GGG    R PP+IDGM +LK+DN+ Y  T EDLR +F+  GE+GD+YIPRD  + ++RGFAFVR+++K DAE ALE +DG    GR+LRV +A   RP
Sbjct:    3 GGGNNSARPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRP 100          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|1048007377|ref|XP_017464155.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Rhagoletis zephyria] >gi|1048007379|ref|XP_017464161.1| PREDICTED: serine/arginine-rich splicing factor 2 [Rhagoletis zephyria])

HSP 1 Score: 113.235 bits (282), Expect = 2.930e-28
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 0
Query:   13 DGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDH 113
             GGG    R PP+I+GM +LK+DN+ Y  T EDLR +F+  GE+GD+YIPRD  + ++RGFAFVR+++K DAE ALE +DG    GR+LRV +A   RP+ 
Sbjct:    2 SGGGNNAARPPPRIEGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRPNS 102          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|1036992947|ref|XP_017099830.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Drosophila bipectinata])

HSP 1 Score: 112.849 bits (281), Expect = 4.893e-28
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 0
Query:   13 DGGGGAGGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVA 106
            +GGG  G R PP+IDGM +LK+DN+ Y  T EDLR +F+  GE+GD+YIPRD  + ++RGFAFVR+++K DAE ALE +DG    GR+LRV +A
Sbjct:    3 NGGGLGGARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMA 96          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|221117570|ref|XP_002161458.1| (PREDICTED: serine/arginine-rich splicing factor 2-like isoform X1 [Hydra vulgaris])

HSP 1 Score: 111.309 bits (277), Expect = 1.788e-27
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0
Query:   19 GGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRPDH 113
            G RGPP+I+GM +LK+DN+ Y  + EDL   FK  GE+GD+YIPRD N+ ++RGFAFVRY+E+ DAE A++ +DG    GR++RV++A   RP +
Sbjct:    7 GSRGPPQIEGMVSLKVDNLTYRTSMEDLERYFKKYGELGDIYIPRDRNTHESRGFAFVRYYEERDAEDAMDSMDGKVIDGREIRVAMARYGRPSN 101          
BLAST of EWM20986.1 vs. NCBI_GenBank
Match: gi|907631062|ref|XP_013098882.1| (PREDICTED: serine/arginine-rich splicing factor 2 [Stomoxys calcitrans] >gi|907631065|ref|XP_013098883.1| PREDICTED: serine/arginine-rich splicing factor 2 [Stomoxys calcitrans])

HSP 1 Score: 110.923 bits (276), Expect = 4.194e-27
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 0
Query:   19 GGRGPPKIDGMTTLKIDNIRYDCTTEDLRELFKDTGEIGDVYIPRDHNSGDNRGFAFVRYHEKEDAERALEKVDGTDFKGRDLRVSVATRKRP 111
            GGR PP+IDGM +LK+DN+ Y  T EDLR +F+  G++GD+YIPRD  + ++RGFAFVR+++K DAE ALE +DG    GR+LRV +A   RP
Sbjct:   13 GGRPPPRIDGMISLKVDNLTYRTTPEDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFYDKRDAEEALEAMDGRKLDGRELRVQMARYGRP 105          
The following BLAST results are available for this feature:
BLAST of EWM20986.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100981|gb|EWM20986.1|5.795e-123100.00splicing arginine serine-rich 2 [Nannochloropsis g... [more]
gi|194761376|ref|XP_001962905.1|1.331e-2855.56uncharacterized protein Dana_GF15672 [Drosophila a... [more]
gi|929355526|ref|XP_014086923.1|2.133e-2855.10PREDICTED: serine/arginine-rich splicing factor 2 ... [more]
gi|751801113|ref|XP_011210585.1|2.216e-2854.55PREDICTED: serine/arginine-rich splicing factor 2 ... [more]
gi|1098676648|ref|XP_018798400.1|2.562e-2855.10PREDICTED: serine/arginine-rich splicing factor 2 ... [more]
gi|498942705|ref|XP_004521759.1|2.733e-2855.10serine/arginine-rich splicing factor 2 [Ceratitis ... [more]
gi|1048007377|ref|XP_017464155.1|2.930e-2852.48PREDICTED: serine/arginine-rich splicing factor 2 ... [more]
gi|1036992947|ref|XP_017099830.1|4.893e-2856.38PREDICTED: serine/arginine-rich splicing factor 2 ... [more]
gi|221117570|ref|XP_002161458.1|1.788e-2752.63PREDICTED: serine/arginine-rich splicing factor 2-... [more]
gi|907631062|ref|XP_013098882.1|4.194e-2755.91PREDICTED: serine/arginine-rich splicing factor 2 ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9720rna9720Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications