EWM21008.1, cds9669 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21008.1
Unique Name	cds9669
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037255.1:187953..189170 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21008.1
Product	glyceraldehyde-3-phosphate dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100081g16.755.mrna
Gene	GapC1
Gbkey	CDS
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:187953..189170 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0009056	catabolic process
GO:0006091	generation of precursor metabolites and energy
GO:0005975	carbohydrate metabolic process
GO:0006006	glucose metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005829	cytosol

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0000166	nucleotide binding
GO:0050661	NADP binding
GO:0051287	NAD binding
GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Vocabulary: **INTERPRO**
Term	Definition
IPR020830	GlycerAld_3-P_DH_AS
IPR020829	GlycerAld_3-P_DH_cat
IPR006424	Glyceraldehyde-3-P_DH_1
IPR016040	NAD(P)-bd_dom
IPR020828	GlycerAld_3-P_DH_NAD(P)-bd
IPR020831	GlycerAld/Erythrose_P_DH

Homology

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|585101006|gb|EWM21008.1| (glyceraldehyde-3-phosphate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 835.099 bits (2156), Expect = 0.000e+0
Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0

Query:    1 MRILTALLFPLLACSATLTAYFSRSAFKMAPVQSTLIGALALAGSASAFVTPSFKLNAVQHARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQDGVSL 405
            MRILTALLFPLLACSATLTAYFSRSAFKMAPVQSTLIGALALAGSASAFVTPSFKLNAVQHARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQDGVSL
Sbjct:    1 MRILTALLFPLLACSATLTAYFSRSAFKMAPVQSTLIGALALAGSASAFVTPSFKLNAVQHARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQDGVSL 405

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|585101005|gb|EWM21007.1| (glyceraldehyde-3-phosphate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 778.089 bits (2008), Expect = 0.000e+0
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 0

Query:   29 MAPVQSTLIGALALAGSASAFVTPSFKLNAVQHARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQDGVSL 405
            MAPVQSTLIGALALAGSASAFVTPSFKLNAVQHARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQDGVSL
Sbjct:    1 MAPVQSTLIGALALAGSASAFVTPSFKLNAVQHARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQDGVSL 377

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|224809175|dbj|BAH28795.1| (glyceraldehyde-3-phosphate dehydrogenase, partial [Nannochloropsis oculata])

HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 282/299 (94.31%), Postives = 292/299 (97.66%), Query Frame = 0

Query:   80 RIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVA 378
            RIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGD IIIDG R+ TTHTRKPEEIGWGKLGA+YLCESTGAFLTKDTCQVH+DGGAKKVVMSAPAKDDSQVIVMGVNE DY GA+ILSCASCTTNGLAPIVK++NDEFGIEEALMTTVH+FTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVP PDVSVVDLTARLSKPTTYEAICAA++KASETTHKGV+GYTELPMVSQDFVSD RSTIFDAGAGIALNPQFVKLVA
Sbjct:    1 RIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDTIIIDGQRVMTTHTRKPEEIGWGKLGATYLCESTGAFLTKDTCQVHIDGGAKKVVMSAPAKDDSQVIVMGVNEDDYVGANILSCASCTTNGLAPIVKIINDEFGIEEALMTTVHAFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPVPDVSVVDLTARLSKPTTYEAICAAVEKASETTHKGVVGYTELPMVSQDFVSDSRSTIFDAGAGIALNPQFVKLVA 299

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|156179570|gb|ABU54833.1| (chloroplast glyceraldehyde-3-phosphate dehydrogenase precursor [Dictyota dichotoma] >gi|156888515|gb|ABU96662.1| chloroplast glyceraldehyde-3-phosphate dehydrogenase precursor [Dictyota dichotoma])

HSP 1 Score: 513.457 bits (1321), Expect = 2.407e-179
Identity = 259/377 (68.70%), Postives = 302/377 (80.11%), Query Frame = 0

Query:   29 MAPVQSTLIGALALAGSASAFVTPS-FKLNAVQHARTNDVHMA-VPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGA-DILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASET-THKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQD 401
            MAPV +  + A+ALAGSASAFV PS FK  AV         ++ V  GINGFGRIGRLVAR  +K+P  NL  INTGA  EYMAYQFKYD+VHG+FDG V+V+G D+I+DG R+ T+HTR PEEI +   GA+Y+CESTGAFLT++  Q HL  GAKK+V SAPAKDDS  IVMGVNE  Y+ +  ++SCASCTTNGLAP VKV+ND FGI++ALMTTVH+ TATQMVVDG+SKKDWRGGR AS NIIPSSTGAAKAVTKVIP+LKGKLTGMAFRVPTP+VSVVDLT  L K TTYE IC AIK A+E+   KG++GYTE P+VS DF+SD RS+IFDAGAGI LNP FVK+VAWYDNEWGYS RV+DL+  +A  D
Sbjct:    1 MAPVVNA-VAAMALAGSASAFVVPSAFKGTAVNTRAAAPTKLSMVDCGINGFGRIGRLVARSMIKNPDTNLKLINTGAAPEYMAYQFKYDTVHGKFDGSVEVDGMDLILDGQRVPTSHTRNPEEIPFVATGAAYVCESTGAFLTEEKVQPHLAAGAKKIVFSAPAKDDSHTIVMGVNEDSYESSMKLVSCASCTTNGLAPTVKVINDNFGIKDALMTTVHAMTATQMVVDGTSKKDWRGGRCASSNIIPSSTGAAKAVTKVIPALKGKLTGMAFRVPTPNVSVVDLTCTLEKGTTYEEICGAIKDAAESGPMKGIVGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKVVAWYDNEWGYSQRVMDLMCHMAAVD 376

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|298709303|emb|CBJ31240.1| (glyceraldehyde 3-phosphate dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 513.072 bits (1320), Expect = 3.252e-179
Identity = 265/379 (69.92%), Postives = 302/379 (79.68%), Query Frame = 0

Query:   29 MAPVQSTLIGALALAGSASAFVTPS-FKLNAVQH---ARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGA-DILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASET-THKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQD 401
            MAPV +     LALAGS SAFV PS FK  AV     A +  + MAV  GINGFGRIGRLVAR  VK+P+ NL  INTGA  EYMAYQFKYD+VHG++DG V+V+G D+I+DG R+ T+HTR PEEI +   GA Y+CESTGAFLT++  Q HL  GAKK+V SAPAKDDS  IVMGVN   Y  + D++SCASCTTNGLAP VKV+ND FGI+EALMTTVH+ TATQMVVDG+SKKDWRGGR AS NIIPSSTGAAKAVTKVIPSL+GKLTGMAFRVPTP+VSVVDLT  L K T+YE ICAAIK+ASE+   KGVIGYTE P+VS DF+SD RS+IFDAGAGI LNP FVK VAWYDNEWGYS RV+DL+  +A  D
Sbjct:    1 MAPVLNAAA-TLALAGSCSAFVAPSAFKGAAVTSKASASSTKLSMAVDTGINGFGRIGRLVARSMVKNPETNLKLINTGAAPEYMAYQFKYDTVHGKYDGTVEVDGMDLILDGQRVPTSHTRNPEEIPFTSTGAEYVCESTGAFLTEEKVQPHLKAGAKKIVFSAPAKDDSHTIVMGVNAETYDPSMDLVSCASCTTNGLAPTVKVINDNFGIKEALMTTVHAMTATQMVVDGTSKKDWRGGRTASANIIPSSTGAAKAVTKVIPSLQGKLTGMAFRVPTPNVSVVDLTCTLDKATSYEEICAAIKEASESGPMKGVIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMATVD 378

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|33337515|gb|AAQ13415.1|AF029888_1 (glyceraldehyde 3-phosphate dehydrogenase precursor [Ascophyllum nodosum])

HSP 1 Score: 506.523 bits (1303), Expect = 1.502e-176
Identity = 254/372 (68.28%), Postives = 295/372 (79.30%), Query Frame = 0

Query:   29 MAPVQSTLIGALALAGSASAFVTPS-FKLNAVQH---ARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGA-DILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASET-THKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLI 394
            MAPV +  + A+A AGSASAFV PS F   AV       +  + MA   GINGFGRIGRLVAR  VK+P+ NL  INTGA  EYMAYQFKYD+VHG+F G V+V+G D+I+DG R+ T+HTR PEEI +   GA Y+CESTGAFLT++  Q HL  GAKK+V SAPAKDDS  IVMGVN   Y+ + +++SCASCTTNGLAP VKV+ND F I++ALMTTVH+ TATQMVVDG+SKKDWRGGR AS NIIPSSTGAAKAVTKVIP LKGKLTGMAFRVPTP+VSVVDLT  L K T+YE ICAA+K ASE+    G+IGYTE P+VS DF+SD RS+IFDAGAGI LNP FVK+VAWYDNEWGYS RV+DL+
Sbjct:    1 MAPVINA-VAAMAFAGSASAFVAPSAFNGAAVSTNSATSSTKLSMATDCGINGFGRIGRLVARSMVKNPETNLKLINTGAAPEYMAYQFKYDTVHGKFGGTVEVDGMDLILDGQRVPTSHTRNPEEIPFVATGAEYVCESTGAFLTEEKVQPHLKAGAKKIVFSAPAKDDSHTIVMGVNAETYESSMNLVSCASCTTNGLAPTVKVINDNFVIKDALMTTVHAMTATQMVVDGTSKKDWRGGRCASSNIIPSSTGAAKAVTKVIPQLKGKLTGMAFRVPTPNVSVVDLTCTLEKSTSYEEICAAVKSASESGPMAGIIGYTEEPLVSTDFISDSRSSIFDAGAGIMLNPNFVKVVAWYDNEWGYSQRVMDLM 371

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|156888507|gb|ABU96658.1| (chloroplast glyceraldehyde-3-phosphate dehydrogenase precursor [Saccharina latissima])

HSP 1 Score: 498.049 bits (1281), Expect = 3.100e-173
Identity = 250/359 (69.64%), Postives = 284/359 (79.11%), Query Frame = 0

Query:   49 FVTPS-FKLNAVQH---ARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDY-KGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASET-THKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQD 401
            FV PS F   AV     A +  + MAV  GINGFGRIGRLVAR  VK+P+ NL  INTGA  EYMAYQFKYD+VHG+FDG V+V+G D+I+DG R+ T+HTR PEEI +   GA Y+CESTGAFLT+   Q HL  GAKK+V SAPAKDDS  IVMGVN   Y    D++SCASCTTNGLAP VKV++D FGI+EALMTTVH+ TATQMVVDG+SKKDWRGGR AS NIIPSSTGAAKAVTKVIPSL GKLTGMAFRVPTP+VSVVDLT  L K T+YE +CAAIK ASE+   KGVIGY + P+VS DF+SDPRS+IFDAGAGI LNP FVK VAWYDNEWGYS RV+DL+  +A  D
Sbjct:   20 FVAPSAFNGAAVTSKSAASSTQLSMAVDTGINGFGRIGRLVARSMVKNPETNLKLINTGAAPEYMAYQFKYDTVHGKFDGTVEVDGMDLILDGQRVPTSHTRNPEEIPFTATGAQYVCESTGAFLTEAAVQPHLKAGAKKIVFSAPAKDDSHTIVMGVNAESYVSSMDLVSCASCTTNGLAPTVKVIDDNFGIKEALMTTVHAMTATQMVVDGTSKKDWRGGRCASSNIIPSSTGAAKAVTKVIPSLLGKLTGMAFRVPTPNVSVVDLTCTLEKGTSYEELCAAIKSASESGPMKGVIGYCDEPLVSTDFISDPRSSIFDAGAGIMLNPNFVKCVAWYDNEWGYSQRVMDLMVHMANVD 378

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|398372860|gb|AFO84289.1| (glyceraldehyde-3-phosphate dehydrogenase [Ditylum brightwellii])

HSP 1 Score: 490.73 bits (1262), Expect = 1.711e-170
Identity = 241/365 (66.03%), Postives = 288/365 (78.90%), Query Frame = 0

Query:   41 ALAGSASAFVTPSFKLNAVQHARTND--VHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTG-ADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGA-DILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQD 401
            AL GSA+A+   SF  +A++ + +ND  + MA  MG+NGFGRIGRLV RI ++D +C L  IN G A  +YMAYQ+KYD++HG+  G V+V+GD +++DG +I+T+  R P+E+GWG LGA Y+CESTG FLTK++ Q  +DGGAKKV+ SAPAKDDS  IVMGVN   Y G+ D +SCASCTTNGLAP+VK ++DEF IEEALMTTVH+ TATQ VVD SS+KDWRGGRAAS NIIPSSTGAAKAVTKVIPSL GK+TGMAFRVPT DVSVVDLT R  K TTYE ICA IK  SE   KG +GY++ P+VS DF SD RS+IFDA AGI LNP FVKL+AWYDNEWGYS RVVDL+K VA  D
Sbjct:   10 ALVGSAAAYSFSSFTGSALKSSASNDASMSMATGMGVNGFGRIGRLVTRIMMEDDECKLSGINAGSATPDYMAYQYKYDTIHGKAKGTVEVDGDFLVLDGKKIQTSRCRDPKEVGWGALGADYVCESTGVFLTKESAQSIIDGGAKKVIYSAPAKDDSLTIVMGVNAEAYDGSEDFISCASCTTNGLAPMVKAIHDEFVIEEALMTTVHAMTATQAVVDSSSRKDWRGGRAASGNIIPSSTGAAKAVTKVIPSLVGKITGMAFRVPTIDVSVVDLTCRTEKSTTYEEICAVIKAKSEGEMKGFLGYSDEPLVSTDFESDSRSSIFDADAGIMLNPNFVKLIAWYDNEWGYSGRVVDLMKHVAAVD 374

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|223993043|ref|XP_002286205.1| (glyceraldehyde-3-phosphate dehydrogenase precursor, partial [Thalassiosira pseudonana CCMP1335] >gi|220977520|gb|EED95846.1| glyceraldehyde-3-phosphate dehydrogenase precursor, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 489.574 bits (1259), Expect = 4.240e-170
Identity = 240/369 (65.04%), Postives = 290/369 (78.59%), Query Frame = 0

Query:   36 LIGALALAGSASAFVTPSFKLNAVQH-ARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTG-ADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGA-DILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQD 401
             I AL+L   ASA+   +F  ++++  +  + + MA  MG+NGFGRIGRLV RI ++D    L AIN G A  +YMAYQ+KYD++HG   G VD++GD ++++G +I+T+  R P+E+GWG LGA Y+CESTG FLTK+  Q  +DGGAKKV+ SAPAKDDSQ IVMGVN+ +Y G+ D +SCASCTTNGLAP+VK ++DEF I+EALMTTVH+ TATQ VVD SS+KDWRGGRAAS NIIPSSTGAAKAVTKVIPSL+GKLTGMAFRVPT DVSVVDLT +L K TTYE ICA IK  SE   KG++GY + P+VS DF SD RS+IFDAGAGI LNP FVKLVAWYDNEWGYS RVVDL+K VA  D
Sbjct:    2 FIAALSLVAGASAYAPSAFSGSSLRATSNGSSMSMATGMGVNGFGRIGRLVTRIMMEDDDIKLSAINAGSATPDYMAYQYKYDTIHGIAKGTVDIDGDFLVLNGEKIQTSRCRDPKEVGWGALGADYVCESTGVFLTKEKAQAIIDGGAKKVIYSAPAKDDSQTIVMGVNQGEYDGSEDFISCASCTTNGLAPMVKAIHDEFDIQEALMTTVHAMTATQAVVDSSSRKDWRGGRAASGNIIPSSTGAAKAVTKVIPSLQGKLTGMAFRVPTIDVSVVDLTCKLGKATTYEEICAVIKAKSEGEMKGILGYCDEPLVSTDFESDSRSSIFDAGAGIMLNPTFVKLVAWYDNEWGYSGRVVDLMKHVAAVD 370

[Close]

BLAST of EWM21008.1 vs. NCBI_GenBank
Match: gi|1210525740|dbj|GAX15346.1| (hypothetical protein FisN_8Lu366 [Fistulifera solaris])

HSP 1 Score: 485.723 bits (1249), Expect = 1.670e-168
Identity = 241/366 (65.85%), Postives = 286/366 (78.14%), Query Frame = 0

Query:   40 LALAGSASAFVTPSFKLNAVQHARTND--VHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAINTG-ADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGA-DILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQD 401
            +A  GSA+AF   SF   ++     ND  + MA  MG+NGFGRIGRLV RI ++D    L  IN G A  +YMAYQ+KYD++HG+    V+++GD +I+DG +I+T+  R P+E+GWG LGA Y+CESTG FLTK+  Q  +DGGAKKV+ SAPAKDDSQ IVMGVN+ DY G+ D +SCASCTTNGLAP+VK +NDEFGI+EALMTTVH+ TATQ VVD SS+KDWRGGRAAS NIIPSSTGAAKAVTKVIP LKGKLTGMAFRVPT DVSVVDLTARLSK TTYE ICA IK  +E   K  +GY++ P+VS DF  D RS+IFDA AGI LNP+FVKL+AWYDNE+GYS RVVDL+K VA  D
Sbjct:    9 VATIGSAAAFTGSSFAGTSLSQGVRNDSSLKMANGMGVNGFGRIGRLVTRIMMEDKDIALNGINAGSATPDYMAYQYKYDTIHGKAKQTVEIDGDFLILDGKKIQTSRCRDPKEVGWGALGADYVCESTGVFLTKEKAQAIIDGGAKKVIYSAPAKDDSQTIVMGVNQGDYDGSEDFISCASCTTNGLAPMVKAINDEFGIDEALMTTVHAMTATQAVVDSSSRKDWRGGRAASGNIIPSSTGAAKAVTKVIPELKGKLTGMAFRVPTIDVSVVDLTARLSKETTYEEICAHIKSKAEGDMKPFLGYSDEPLVSTDFEGDIRSSIFDAEAGIMLNPRFVKLIAWYDNEYGYSARVVDLMKHVAMVD 374

The following BLAST results are available for this feature:

BLAST of EWM21008.1 vs. NCBI_GenBank

BLAST of EWM21008.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585101006\|gb\|EWM21008.1\|	0.000e+0	100.00	glyceraldehyde-3-phosphate dehydrogenase [Nannochl...	[more]
gi\|585101005\|gb\|EWM21007.1\|	0.000e+0	100.00	glyceraldehyde-3-phosphate dehydrogenase [Nannochl...	[more]
gi\|224809175\|dbj\|BAH28795.1\|	0.000e+0	94.31	glyceraldehyde-3-phosphate dehydrogenase, partial ...	[more]
gi\|156179570\|gb\|ABU54833.1\|	2.407e-179	68.70	chloroplast glyceraldehyde-3-phosphate dehydrogena...	[more]
gi\|298709303\|emb\|CBJ31240.1\|	3.252e-179	69.92	glyceraldehyde 3-phosphate dehydrogenase [Ectocarp...	[more]
gi\|33337515\|gb\|AAQ13415.1\|AF029888_1	1.502e-176	68.28	glyceraldehyde 3-phosphate dehydrogenase precursor...	[more]
gi\|156888507\|gb\|ABU96658.1\|	3.100e-173	69.64	chloroplast glyceraldehyde-3-phosphate dehydrogena...	[more]
gi\|398372860\|gb\|AFO84289.1\|	1.711e-170	66.03	glyceraldehyde-3-phosphate dehydrogenase [Ditylum ...	[more]
gi\|223993043\|ref\|XP_002286205.1\|	4.240e-170	65.04	glyceraldehyde-3-phosphate dehydrogenase precursor...	[more]
gi\|1210525740\|dbj\|GAX15346.1\|	1.670e-168	65.85	hypothetical protein FisN_8Lu366 [Fistulifera sola...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9700	rna9700	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications