EWM21037.1, cds9638 (CDS) Nannochloropsis gaditana

Overview
NameEWM21037.1
Unique Namecds9638
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:106395..107096 +
Alignment locationKK037255.1:107308..107559 +
Alignment locationKK037255.1:107730..108863 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21037.1
Producttranslation initiation factor if-2
Orig transcript idgnl|cribi|Naga_100422g3.3151.mrna
GenePTIF2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:106395..107096 +
KK037255.1supercontigKK037255.1:107308..107559 +
KK037255.1supercontigKK037255.1:107730..108863 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0003743translation initiation factor activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR000795TF_GTP-bd_dom
IPR015760TIF_IF2
IPR005225Small_GTP-bd_dom
IPR023115TIF_IF2_dom3
IPR004161Transl_elong_EFTu/EF1A_2
IPR006847IF2_N
IPR027417P-loop_NTPase
IPR000178TF_IF2_bacterial-like
Homology
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|585101045|gb|EWM21037.1| (translation initiation factor if-2 [Nannochloropsis gaditana])

HSP 1 Score: 1382.08 bits (3576), Expect = 0.000e+0
Identity = 695/695 (100.00%), Postives = 695/695 (100.00%), Query Frame = 0
Query:    1 MVIPAVSPADLEAVEAARRKKEKEKLKKGGKYGEEERGGAIGKGGRGGGRKGGRFEGDVEDVDAVLGGGGSKYRKKGGRKGGRGGYEEPVAQGPKVVVLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDKKK 695
            MVIPAVSPADLEAVEAARRKKEKEKLKKGGKYGEEERGGAIGKGGRGGGRKGGRFEGDVEDVDAVLGGGGSKYRKKGGRKGGRGGYEEPVAQGPKVVVLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDKKK
Sbjct:    1 MVIPAVSPADLEAVEAARRKKEKEKLKKGGKYGEEERGGAIGKGGRGGGRKGGRFEGDVEDVDAVLGGGGSKYRKKGGRKGGRGGYEEPVAQGPKVVVLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDKKK 695          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|298705922|emb|CBJ29052.1| (PTIF2, plastid translation intiation factor 2 [Ectocarpus siliculosus])

HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 326/605 (53.88%), Postives = 442/605 (73.06%), Query Frame = 0
Query:   91 AQGPKVVVLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQV-THAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFG--TDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVD 692
            A  P VV L  PT+ ++ L+E M+VR  E++K+LM+++G+MATITQSIDA+T  +VA  F  +V     +D     D EE +SV   G   E +   ++LPRAPVVTIMGHVDHGKTSLLDA+RE+ V  GEAGGITQH+ AYQV T A   +TF+DTPGHAAFSEMR RGAN TD+VVLVVAAD+GV EQT +SI  A+ A VPI++A+NKVDK GAD  +V  ELM +D+L EE+GGD   A VSAK++  LD LLEKILLQ+E+L+LK+NP+RSA G ++E+RME+GLG V TVL+Q+GTLRVGD  VAG A+G+V++L D +G+R++ AGPS P  + G+DGVP AGD   VV+ E  AR++AEARR++ RE S +   G ++  +LSI     D  K+  E+ V+IKADVQGS +A+ TA+S +  ED+  +   K+L SGVG++T++DVA+AGVS A ++ FNV AD  A  EAR  G++I Y++V+Y+++D ++AK+ E++SPTP+GEY G A VK++F IGKVG +AG  V DG I +GG V V R   IV++G L+TL+N+K D  +M  G ECG+  + +EDF+  D++ECY +D
Sbjct:  418 APAPAVVRLPGPTIVVSELAEMMEVRPAEVLKHLMLDLGIMATITQSIDADTARQVANNFEVEV-----DDGSSSFDEEEVVSVGDTGTAIEIDAEDTMLPRAPVVTIMGHVDHGKTSLLDAIRETKVVAGEAGGITQHVSAYQVKTDAGADLTFVDTPGHAAFSEMRVRGANATDIVVLVVAADDGVMEQTKESIATARMADVPIVVAINKVDKEGADVQKVQNELMTFDLLPEEFGGDTQVAMVSAKQKSGLDELLEKILLQSEVLELKSNPDRSAEGVIIEARMERGLGTVGTVLIQRGTLRVGDIFVAGGAWGRVKALIDHQGRRIKEAGPSTPVQVGGFDGVPDAGDVFTVVDREDIARDLAEARRKIARESSAAILQGGLKNDMLSILSGEADEGKELFELPVMIKADVQGSEQALQTALSEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAVVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD 1017          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|219115513|ref|XP_002178552.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410287|gb|EEC50217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 314/595 (52.77%), Postives = 429/595 (72.10%), Query Frame = 0
Query:   98 VLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRS-LTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVS-QATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYV 690
            +L +  L++  L+E ++ +   +IK+LM ++GVMA++TQ++D+ T V VAE FG+    G EE            S L  G  ++E+D A L PRAPVVTIMGHVDHGKTSLLD +R++ V  GEAGGITQHI AYQVT   +TITF+DTPGHAAF++MR RGAN+TD++VLVVAAD+GVK+QT DSI CA+QA VP+++A+NK D   ADP++V  EL  YDVL EE+GGDVLS+++SAKK  N+D LL+KI+LQAEI D+KANP+R A   VVE+ +EKGLG V T LVQKGTLRVGD  VAG  +GKVR+ L+     R++  GPS P  + G++GVP AGD LIV + E  AR +AE R+R+ RE+S S+    +   V   FG   VK+ +E+ VV+KADVQGSAEA+  A+  +  EDD+A V VKVL S  G+V+++D+A+A V+   T++AFN+ A   A E++R TGV IEY+ +IYD ++ +E+++QE+LSPTPEGEYVG+A+V+ VF IG  G +AG   T+G +K+G  VRV+RG +I+ +  ++TLRN K++   +  G ECG+   D+E F PDD++ECYV
Sbjct:    1 MLPDGPLSVIDLAEILEEKPVSVIKFLMTDLGVMASMTQNLDSATCVAVAEGFGKI---GLEE------------SALATGVVFDEDDPADLKPRAPVVTIMGHVDHGKTSLLDTIRKTQVTAGEAGGITQHIAAYQVTRNDQTITFVDTPGHAAFTDMRERGANITDIIVLVVAADDGVKQQTADSIACARQAGVPLIVAINKCDLETADPTKVMTELTSYDVLTEEFGGDVLSSQISAKKGTNIDDLLDKIMLQAEIQDIKANPDRDAECIVVEANVEKGLGTVATTLVQKGTLRVGDVFVAGETHGKVRALLSTSNNDRMKEVGPSTPVRVVGFEGVPCAGDVLIVAKDEQTAREMAENRQRIAREKSSSSYQAGLMDSVAMTFG--AVKESREMCVVVKADVQGSAEALTRALRDLKREDDQAIVTVKVLVSEAGEVSKSDIAIASVTPDTTVIAFNIPASFAAMEDSRVTGVPIEYYNIIYDAIESVESRMQEVLSPTPEGEYVGSAKVQEVFNIGGTGNIAGSRCTNGFLKKGANVRVMRGDKILIESRIKTLRNFKAETDSIEEGNECGIGLLDFEAFEPDDVIECYV 578          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|1113390393|gb|OJW53412.1| (translation initiation factor IF-2 [Alphaproteobacteria bacterium 41-28])

HSP 1 Score: 613.224 bits (1580), Expect = 0.000e+0
Identity = 317/612 (51.80%), Postives = 443/612 (72.39%), Query Frame = 0
Query:   84 GGYEEPVAQGPKVVVLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVT-HAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERE-RSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDK 693
             G E+P  +  + V++ E  +T+  L+ R+  R+ ++IK LM NMGVMATITQSIDA+T   +A  FG QV+R  E D             +  G   ++ED + + PR PVVTIMGHVDHGKTSLLDA+R++ V  GEAGGITQHIGAYQV  ++   ITFIDTPGHAAF+EMRARGANVTD+VVLVVAAD+GVK+QTI++IR AK A+VPI++A+NK+DKP ADP RV   LM++++ LE+ GGD+L  EVSAK+ LNLD L E ILLQAEILDLKA PNR A G VVES++E+G G V TVLVQKGTL+VGD  VAGA +G+VR+L D+RG +++ AGPSVP  + G++G P AGD  +VV++E +AR V+E R+R  RE +S  +  G+M+ Q+ +      +K   E+ V+IK+DVQGS EAI+ +++ +  +    EV V +L S VG++T++DV LA  S A I+ FNV A+  A+E AR+ G+EI Y+++IYD++D ++A +  +L+PT   +Y+GAA ++ VF I KVGK+AGC VT+G +KRG  VR+LR + ++++G L+TL+  K +V+E+  G ECGM+F++Y D +  D +EC+ +++
Sbjct:  227 AGLEKPQQKVIREVIIPE-VITVQELASRLAERSSDVIKVLM-NMGVMATITQSIDADTAELIATEFGHQVKRVSESD-------------IEIGLHIKDEDLSQMKPRPPVVTIMGHVDHGKTSLLDALRKTDVVAGEAGGITQHIGAYQVILNSGDKITFIDTPGHAAFTEMRARGANVTDIVVLVVAADDGVKDQTIEAIRHAKAANVPIIIAINKIDKPEADPERVRNMLMQHEIFLEKVGGDILDVEVSAKQGLNLDKLEETILLQAEILDLKATPNRPAEGVVVESKLERGRGVVATVLVQKGTLKVGDLFVAGAEHGRVRALLDDRGNQIDEAGPSVPVEILGFNGAPMAGDDFVVVDNENRAREVSEFRQRQAREAKSALSARGTME-QMFTQIAAGEIK---ELPVIIKSDVQGSMEAISGSLTKLSTD----EVKVNILHSAVGEITESDVTLAKASHAIIIGFNVRANPQAREAARRDGIEIRYYSIIYDVVDDMKAALGGLLAPTLREKYLGAATIRNVFSISKVGKIAGCMVTEGIVKRGAKVRLLRDNIVIHEGTLKTLKRFKDEVKEVREGYECGMAFENYNDIKEGDTIECFEIEE 815          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|406989638|gb|EKE09404.1| (hypothetical protein ACD_16C00187G0005 [uncultured bacterium] >gi|1082268449|gb|OFW69309.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium GWC2_42_16] >gi|1082278714|gb|OFW74027.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium GWA2_41_27] >gi|1082294618|gb|OFW82996.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_100] >gi|1082296564|gb|OFW84511.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium RBG_16_42_14] >gi|1082309079|gb|OFW90740.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_42_13] >gi|1082310403|gb|OFW91981.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_30] >gi|1082335483|gb|OFX01171.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium RIFCSPLOWO2_02_42_7] >gi|1082340326|gb|OFX05704.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_43_54] >gi|1082347719|gb|OFX08375.1| translation initiation factor IF-2 [Alphaproteobacteria bacterium RIFCSPLOWO2_12_FULL_42_29])

HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 312/611 (51.06%), Postives = 439/611 (71.85%), Query Frame = 0
Query:   84 GGYEEPVAQGPKVVVLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHR-TITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDK 693
             G E P  +  + VV+ E  +T+  LS R+  R  ++IK LM  MGVMATITQSIDA+T   +A  FG QV+R  E D             +  G    +ED   L PR PVVT+MGHVDHGKTSLLDA+R++ V  GEAGGITQHIGAYQVT + +  ITFIDTPGHAAF+EMRARGANVTD+VVLVVAAD+GVK+QTI++I  AK A+VPI++A+NK+DKPGA+P +V   LM++++ LE+ GGD+L  EVSAK  LNL+ L E ILLQAEIL+LKANP+R+A G VVES++E+G G V+TVLVQKGTLRVGD  VAGA YG+VR+L D+R  +++ AGPSVP  + G++G P AGD  +VVE+E +AR ++E R R  RE   + ++     Q+ S    +G  + +E+ ++IK+DVQGS EAI+ +++ +  E    EV VK+L   VG++T++DV LA  S+A I+ FNV A+  A+E AR+ G+EI Y+++IYD++D ++A +  +L+PT   +Y+G A+++ +F I KVGKVAGC +T+G +KRG  VR+LR + ++++G L+TL+  K +V+E+  G ECGM+F++Y D + +D +EC+ +++
Sbjct:  221 AGIEVPKQKVIREVVIPE-VITVQELSNRLAERGADVIKALM-KMGVMATITQSIDADTAELIATEFGHQVKRVSESD-------------IEIGLHIRDEDPVLLKPRPPVVTVMGHVDHGKTSLLDALRKTDVVAGEAGGITQHIGAYQVTLSSKDKITFIDTPGHAAFTEMRARGANVTDIVVLVVAADDGVKDQTIEAIHHAKAANVPIIIAINKMDKPGANPEQVRNMLMQHEIFLEKVGGDILDVEVSAKTGLNLNKLEETILLQAEILELKANPDRTAEGVVVESKLERGRGVVSTVLVQKGTLRVGDLFVAGAEYGRVRALIDDRSHQIDAAGPSVPVEVLGFNGAPMAGDDFVVVENENRAREISEFRHRRAREAKSAISVRDTMEQMFSKISEEG--EVRELPLIIKSDVQGSMEAISGSLARLSTE----EVKVKILHQAVGEITESDVTLAKASRAMIIGFNVRANPQAREAARRDGIEIRYYSIIYDVVDDIKAALGGLLAPTLREKYLGKAQIRNIFSIPKVGKVAGCMITEGLVKRGSKVRLLRDNIVIHEGSLKTLKRFKDEVKEVREGYECGMAFENYNDIKENDSIECFEIEE 810          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|1210513002|dbj|GAX28010.1| (translation initiation factor IF-2 [Fistulifera solaris])

HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0
Identity = 330/676 (48.82%), Postives = 465/676 (68.79%), Query Frame = 0
Query:   39 GAIGKGGR---GGGRKGGRFEGDVEDVDAV-----LGGGGSK-------YRKKGGRKGGRGGYEEPVAQGP---KVVVLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSL--TDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATI-LAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDK 693
            G I +G R   G   + GR + D    ++      +GG GSK        R+   ++  R G +E  A+     K V L +  +T+A L++ +D +   IIK LM ++GVMA++TQS+D  T V VA+ FG+ V    +E E EG+    E  V+ +    E+++  SL PR PVVTIMGHVDHGKTSLLDA+R + V  GEAGGITQHI +YQV H  + ITFIDTPGHAAF++MR RGAN+TD+V+LVVAAD+ VK+QT+DSI CA+QA VP+++AVNK D   ADP +V  +L  YDVL E++GGDVL + +SAKK  NLD LL+K++LQAE+ +L+ANP+RSA   V+E+ ++KGLG V T LV++GTLRVGD  VAG  YG+VR+L  T +   R++ AGPS P  + G++G+PAAGD L+V E E  AR +AE+R+R+ RERS S+    + + V   FG    K+R+E+ VV+KADVQGSAEA+  A+S + +E+D A VG+KVL S  G++ ++D+++A V+  TI +AFN AA   A E+AR  G+ IEY+ +IYD ++ +E ++QE+LSPTP+GEYVGAA V+ VF IG  G + G   TDG +++GG VRVLRG +I+ +  + +LRN K++V  +  G ECG+   ++EDF+P+D++EC+VV K
Sbjct:  141 GPIKEGARRRDGKPARRGRADDDTPKKNSAKNSLRVGGTGSKGRSAELTQRRGTLKRRDRAGEKEAKAEAALERKTVYLSDGAMTVAELADALDEKPVAIIKMLMTDLGVMASMTQSLDVATCVAVAQGFGKIVA-DVDESELEGDGSALETGVVLD----EDDNEESLRPRPPVVTIMGHVDHGKTSLLDAIRNTDVTAGEAGGITQHITSYQVKHNGQLITFIDTPGHAAFTDMRERGANITDMVILVVAADDSVKQQTVDSIMCARQAGVPLVVAVNKCDLETADPIKVMTDLTAYDVLTEDFGGDVLVSRISAKKGENLDDLLDKVMLQAEVQNLRANPDRSAECIVIEANVQKGLGTVATSLVKRGTLRVGDIFVAGETYGRVRALISTADGKTRMKEAGPSTPVNIVGFEGIPAAGDILVVSEDEQVARELAESRQRIARERSSSSYQAGLMSSVAMAFGPG--KERREMCVVVKADVQGSAEALTRALSELKLENDEAVVGIKVLVSEAGEINKSDISIASVTPGTIVIAFNCAASFAAMEDARAAGINIEYYNIIYDAIESVEKRMQEVLSPTPDGEYVGAAIVQEVFNIGGTGNIGGSRCTDGYLRKGGNVRVLRGDKILAESKIVSLRNFKAEVDSIEEGDECGIGLFEFEDFQPNDVIECFVVKK 809          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|1210511469|dbj|GAX29283.1| (translation initiation factor IF-2 [Fistulifera solaris])

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 327/677 (48.30%), Postives = 466/677 (68.83%), Query Frame = 0
Query:   38 GGAIGKGGR---GGGRKGGRFEGDVEDVDAV-----LGGGGSK-------YRKKGGRKGGRGGYEEPVAQGP---KVVVLDEPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSL--TDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATI-LAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDK 693
             G I +G R   G   + GR + D+   ++      +GG G K        R+   ++  R G +E  A+     K V L +  +T+A L++ +D +   IIK LM ++GVMA++TQS+D  T + VA+ FG+ V    +E E EG+    E  V+ +    E++D  SL PR PVVTIMGHVDHGKTSLLDA+R + V  GEAGGITQHI +YQV H  + ITFIDTPGHAAF++MR RGAN+TD+V+LVVAAD+ VK+QT+DSI CA+QA VP+++AVNK D   ADP +V  +L  YDVL E++GGDVL + +SAKK  NLD LL+K++LQAEI +L+ANP+RSA   V+E+ ++KGLG V T LV++GTLRVGD  VAG  YG+VR+L  T +   R++ AGPS P  + G++G+PAAGD L+V + E  AR +AE+R+R+ RERS S+    + + V   FG    K+R+E+ VV+KADVQGSAEA+  A+S + +E+D A VG+KVL S  G++ ++D+++A V+  TI +AFN AA   A E+AR  G++IEY+ +IYD ++ ++ ++QE+LSPTP+GEYVG+A V+ VF IG  G + G   TDG +++GG VRVLRG +I+ +  + +LRN K++V  +  G ECG+   ++EDF+P+D++EC+VV K
Sbjct:  195 AGPIKEGTRRRDGKPARRGRVDDDIPKKNSAKNSLRVGGTGRKGRSAELTQRRGTLKRRDRAGEKEAKAEAALERKTVYLSDGPMTVAELADALDEKPVAIIKMLMTDLGVMASMTQSLDVATCIAVAQGFGKIVA-DVDESELEGDGSALETGVVLD----EDDDEESLRPRPPVVTIMGHVDHGKTSLLDAIRNTDVTAGEAGGITQHITSYQVKHNGQLITFIDTPGHAAFTDMRERGANITDMVILVVAADDSVKQQTVDSIMCARQAGVPLVVAVNKCDLETADPIKVMTDLTAYDVLTEDFGGDVLVSRISAKKGENLDDLLDKVMLQAEIQNLRANPDRSAECIVIEANVQKGLGTVATSLVKRGTLRVGDIFVAGETYGRVRALISTADGKTRMKEAGPSTPVNIVGFEGIPAAGDILVVSDDEQVARELAESRQRIARERSSSSYQAGLMSSVAMAFGPG--KERREMCVVVKADVQGSAEALTRALSELKLENDEAVVGIKVLVSEAGEINKSDISIASVTPGTIVIAFNCAASFAAMEDARAAGIDIEYYNIIYDAIESVQKRMQEVLSPTPDGEYVGSAVVQEVFNIGGTGNIGGSRCTDGYLRKGGNVRVLRGDKILAESKIVSLRNFKAEVDSIEEGDECGIGLFEFEDFQPNDVIECFVVKK 864          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|224005394|ref|XP_002296348.1| (bacterial protein translation initiation factor 2 [Thalassiosira pseudonana CCMP1335] >gi|209586380|gb|ACI65065.1| bacterial protein translation initiation factor 2 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 311/590 (52.71%), Postives = 427/590 (72.37%), Query Frame = 0
Query:  104 LTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGK-RLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQ-ATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVV 691
            +T+  L+E +      +IK+LMV++GVMA I+Q++D  T   VAE FG+ V    +E + + +D ++E + L  G  W+E+D   L+PR PVVTIMGHVDHGKTSLLDA+R + V  GEAGGITQ I AYQV H    ITFIDTPGHAAF++MR RGAN  D+++LVVAAD+ VK+QT DSI CA+QA VP+L+AVNK+D P AD +RV  +L  Y+VL+E+ GG+VL +++SAK+  NLD LL KI+LQAE+LDLKANPNR A G V+E+R+EKGLG V T L+ KGT+RVGD  VAG A GKVR+L    GK RL+ AGPS+P  ++G  G+PAAGD ++V E E  AR +A +R R+ RER  S+    +   V  IF + G K+ +E+ VV+KADVQGSAEA+A ++S + +E++  EV +KVL S  GDVT++D+A+A V+   T++AFN  A++ A ++AR  GV IEY++V+YD ++ +E ++QE+LSPTPEGEYVG+A V+ VF IG  G +AG +  DG IK+G  VRVLRG +I+ +  +RTLRN KS+V  ++ G ECG+   DYE+F   D++E +V+
Sbjct:    1 MTVGELAEAIGETPVSVIKFLMVDLGVMAAISQTLDPPTCEAVAEGFGKVVAGEDDEYDDDEDDEDDEDTALDLGVAWDEDDDEDLVPRPPVVTIMGHVDHGKTSLLDAIRNTRVTAGEAGGITQAINAYQVEHEGSPITFIDTPGHAAFTDMRERGANTADMIILVVAADDSVKQQTADSIACARQAGVPLLVAVNKIDLPTADVNRVLSDLAGYEVLVEDLGGEVLCSQISAKEGTNLDDLLGKIMLQAEVLDLKANPNRDAQGVVIEARVEKGLGTVATTLITKGTIRVGDSFVAGEASGKVRALIGPDGKTRLKEAGPSMPISITGITGIPAAGDLMVVAEDEQTARELAASRSRIARERQSSSYQSGLMQSVAGIF-SGGQKELREICVVVKADVQGSAEALARSLSELKLENEEVEVKIKVLISEAGDVTKSDIAVASVTPGTTVIAFNAGANVAAMDDARMLGVPIEYYSVVYDAIESVECRMQEVLSPTPEGEYVGSAIVQEVFNIGGTGNIAGSKCRDGIIKKGSNVRVLRGDKILTESKVRTLRNFKSEVDTITTGDECGIGLLDYEEFEVGDVIESFVL 589          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|568207430|ref|WP_024081794.1| (translation initiation factor IF-2 [Magnetospirillum gryphiswaldense] >gi|566557642|emb|CDL00867.1| Translation initiation factor IF-2 [Magnetospirillum gryphiswaldense MSR-1 v2])

HSP 1 Score: 583.948 bits (1504), Expect = 0.000e+0
Identity = 308/593 (51.94%), Postives = 421/593 (70.99%), Query Frame = 0
Query:  103 TLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVT-HAHRTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERE-RSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDK 693
            ++T+  L+ RM  R G++IK LM  MGVMATI QSID +T   V   FG  V+R  E D   G +G+            +++D   L+ R PVVTIMGHVDHGKTSLLDA+RE+ V +GEAGGITQHIGAYQVT  +   ITFIDTPGH AF+ MRARGA VTD+VVLVVAAD+G+  QT+++IR AK A VPI++A+NK+DKPGA P RV QEL+++D++ EE GGDVL+ EVSAKKR+NL+ L E ILLQAE+LDLKANP+R+A G VVE++MEKG GPV TVLVQKG+L+VGD  VAG+ +GKVR+L D++G R+E AGPS P  + G DG PAAGD  + VE E +AR +A  R+R+ERE RS  A  G+++     +F      + +E+ VV+K DVQGS EAI  A++ I  +     V ++VL S VG V+++D+ LA  +   I+ FNV A+  A++ AR+ GV+I Y+++IYD+ D ++  +  +L+PT +  ++G A ++ VF I K GKVAGC +T+GT+KRG  VR+LR + ++++G L  L+  K DV+E+  G ECGMSF +YED R  D++EC+ +++
Sbjct:  312 SITVQELANRMAARGGDVIKCLM-RMGVMATINQSIDPDTAELVVAEFGHNVKRVSEADVLVGLEGD-----------VDQDDV--LISRPPVVTIMGHVDHGKTSLLDALRETDVVSGEAGGITQHIGAYQVTMRSGDKITFIDTPGHEAFTAMRARGAKVTDIVVLVVAADDGIMPQTVEAIRHAKAAGVPIIVAINKIDKPGATPERVRQELLQHDLVTEELGGDVLAVEVSAKKRMNLEKLEEAILLQAEVLDLKANPDRTAQGTVVEAKMEKGRGPVATVLVQKGSLKVGDVFVAGSEWGKVRALIDDKGNRVEEAGPSTPVEVLGLDGAPAAGDDFVAVEDEARAREIAGYRQRVEREARSKLAARGTLE----QMFSAIKAGEAKELPVVVKGDVQGSVEAINGALAKIGND----LVKMRVLHSAVGPVSESDITLAKATGGIIIGFNVRANPQARDMARRDGVDIRYYSIIYDVTDDMKTMLSGMLAPTLKENFLGYASIREVFNITKTGKVAGCMITEGTVKRGAGVRLLRENVVIHQGHLAQLKRFKDDVKEVREGYECGMSFTNYEDIRVGDVIECFEIEE 882          
BLAST of EWM21037.1 vs. NCBI_GenBank
Match: gi|1086357874|emb|SDH38322.1| (translation initiation factor IF-2 [Roseospirillum parvum])

HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 310/590 (52.54%), Postives = 413/590 (70.00%), Query Frame = 0
Query:  103 TLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAFGRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMGHVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAH-RTITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVNKVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKILLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIVAGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEMQARNVAEARRRLERERSG--SATMGSMQAQVLSIFGTDGVKKRQEVTVVIKADVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECY 689
            T+T+  L+ RM  R   +IK LM  MGVMATITQSIDA+T   V E FG + +R  + D             +  G    ++DA  L  RAPVVT+MGHVDHGKTSLLDA+R++ V +GEAGGITQHIGAYQVT    + ITFIDTPGHAAF+ MRARGA VTD+V+LVVAAD+G+  QT+++IR AK A VPI++AVNK+DKP ADP+RV  EL+ +D+ +EE GG+VLS EVSAK++LNLD L E ILLQ+E+LDLKANP RSA G V+E++MEKG G + T+LV +GTLRVGD  VAG  +G+VR++ DERG+R++ AGP+VP  + G+ G P AGD  +VVE E +AR VAE R+R ERE     SA  GS   Q   +F      + +E+ VVIKADVQGSAEA+   +  +  +    EV V+VL S VG + ++DV LA  S A I+ FNV A+  A++ AR+ GV+I Y+++IYD+ D ++  +  +LSPT +  ++G A+++ VF I KVGKVAGC VT+G IKRG  VR+LR   ++++G L  L+  K DV+E+  G ECGMSF +Y D +  D++EC+
Sbjct:  304 TVTVQELANRMAERGANVIKALM-KMGVMATITQSIDADTAELVVEEFGHKAKRVADSD-------------IEIGLVAPQDDADKLTSRAPVVTVMGHVDHGKTSLLDALRQTDVVSGEAGGITQHIGAYQVTRPSGQKITFIDTPGHAAFTAMRARGAKVTDIVILVVAADDGIMPQTVEAIRHAKAAEVPIVVAVNKIDKPDADPNRVRTELLNHDIQVEEMGGEVLSVEVSAKQKLNLDKLEEAILLQSELLDLKANPERSAEGTVIEAKMEKGRGSIATILVTRGTLRVGDVFVAGKEWGRVRAMVDERGQRIDEAGPAVPVEVLGFAGTPDAGDDFVVVEDEARAREVAEYRQRKEREALAVKSARGGSSMEQ---LFAAIQAGETKELPVVIKADVQGSAEALVGTLEKLGTD----EVKVRVLHSAVGGINESDVTLAKASNALIIGFNVRANPQARDLARRDGVDIRYYSIIYDVADDMKQALTGMLSPTFKESFLGYAQIREVFSITKVGKVAGCMVTEGQIKRGCKVRLLRDDVVIHEGDLGQLKRFKDDVKEVKEGYECGMSFANYHDIQVGDMIECF 872          
The following BLAST results are available for this feature:
BLAST of EWM21037.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101045|gb|EWM21037.1|0.000e+0100.00translation initiation factor if-2 [Nannochloropsi... [more]
gi|298705922|emb|CBJ29052.1|0.000e+053.88PTIF2, plastid translation intiation factor 2 [Ect... [more]
gi|219115513|ref|XP_002178552.1|0.000e+052.77predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1113390393|gb|OJW53412.1|0.000e+051.80translation initiation factor IF-2 [Alphaproteobac... [more]
gi|406989638|gb|EKE09404.1|0.000e+051.06hypothetical protein ACD_16C00187G0005 [uncultured... [more]
gi|1210513002|dbj|GAX28010.1|0.000e+048.82translation initiation factor IF-2 [Fistulifera so... [more]
gi|1210511469|dbj|GAX29283.1|0.000e+048.30translation initiation factor IF-2 [Fistulifera so... [more]
gi|224005394|ref|XP_002296348.1|0.000e+052.71bacterial protein translation initiation factor 2 ... [more]
gi|568207430|ref|WP_024081794.1|0.000e+051.94translation initiation factor IF-2 [Magnetospirill... [more]
gi|1086357874|emb|SDH38322.1|0.000e+052.54translation initiation factor IF-2 [Roseospirillum... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9669rna9669Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications