rna9669, rna9669 (mRNA) Nannochloropsis gaditana

Overview
Namerna9669
Unique Namerna9669
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length342
Alignment locationKK037255.1:106395..109535 +

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Properties
Property NameValue
Producttranslation initiation factor if-2
Orig transcript idgnl|cribi|Naga_100422g3.3151.mrna
Orig protein idgnl|cribi|Naga_100422g3.3151
GenePTIF2
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:106395..109535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PTIF2gene9389Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9669rna9669-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21037.1cds9638Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9669 ID=rna9669|Name=rna9669|organism=Nannochloropsis gaditana|type=mRNA|length=342bp
ATGGATGTCTACTCTCAGCAAACCAGCGTCGTCGAGCACAGCTTACTCTC
TTCTCGGCAAAACTGTCACGGCAGATCGGCGGACGCCTGTGTCGGAGTGC
GCAGACAGGCCCAGGCAGTACAGTGCCTCTCGCCAGATATCATGGCGCAT
ACTAGTGATGTGGCAGCAGGAACCTCAGAAAGTAAATGTTTTCCCTCCAT
ACCTGCTGAAAACACATGCTCTACCGATCCCAGTCGGAGGAAAGGAGCAC
GAAGGACCTTGGCCGTGGCGGTAGTGGGTTGCCTTTGCCTGGGGTGGGCC
TCGGCGTTCCGGCCGTCGTTTCCGGGACAGATGGGTGCGTGA
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protein sequence of rna9669

>rna9669-protein ID=rna9669-protein|Name=rna9669|organism=Nannochloropsis gaditana|type=polypeptide|length=695bp
MVIPAVSPADLEAVEAARRKKEKEKLKKGGKYGEEERGGAIGKGGRGGGR
KGGRFEGDVEDVDAVLGGGGSKYRKKGGRKGGRGGYEEPVAQGPKVVVLD
EPTLTIAALSERMDVRAGEIIKYLMVNMGVMATITQSIDAETGVRVAEAF
GRQVRRGREEDEGEGEDGEEELSVLTEGYGWEEEDAASLLPRAPVVTIMG
HVDHGKTSLLDAVRESSVATGEAGGITQHIGAYQVTHAHRTITFIDTPGH
AAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCAKQAHVPILLAVN
KVDKPGADPSRVTQELMKYDVLLEEYGGDVLSAEVSAKKRLNLDGLLEKI
LLQAEILDLKANPNRSAVGAVVESRMEKGLGPVTTVLVQKGTLRVGDCIV
AGAAYGKVRSLTDERGKRLETAGPSVPAVLSGWDGVPAAGDTLIVVESEM
QARNVAEARRRLERERSGSATMGSMQAQVLSIFGTDGVKKRQEVTVVIKA
DVQGSAEAIATAVSAIHVEDDRAEVGVKVLSSGVGDVTQNDVALAGVSQA
TILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPE
GEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGP
LRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVDKKK
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mRNA from alignment at KK037255.1:106395..109535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9669 ID=rna9669|Name=rna9669|organism=Nannochloropsis gaditana|type=mRNA|length=3141bp|location=Sequence derived from alignment at KK037255.1:106395..109535+ (Nannochloropsis gaditana)
atggtgaTCCCTGCGGTGTCCCCGGCGGatttggaggcggtggaggcggc gcgtcggaagaaggagaaggagaagttgaagaagggaggcaagtatgggg aggaagagcgggggggggcgatagggaaaggggggaggggcggggggagg aaggggggaaggttcgagggcgacgtggaggacgtggacgctgttttggg ggggggagggagcaagtaccggaagaaggggggaaggaagggcggcaggG GGGGATACGAAGAGCCCGTGGCCCAAGGGCccaaggtggtggtgctggat GAACCTACCTTAACCATCGCCGCCCTGAGCGAGCGGATGGACGTGCGGGC GGGCGAAATCATCAAGTACCTTATGGTAAACATGGGGGTGATGGCGACGA TCACCCAGAGCATCGACGCGGAGACGGGGGtgcgggtggcggaggccttT GGCCGGCAGGtccggcgggggcgggaggaggacgagggggagggggagga cggggaggaggaactgAGCGTGCTCACGGAGGGGTAcggttgggaggagg aggacgccgcgagcctcctcccacgcgccCCCGTGGTGACGATTATGGGC CACGTCGACCACGGGAAGACGAGTTTGCTGGACGCTGTGCGGGAGTCGAG CGTTGCcacgggggaggcgggcgggatcACGCAGCACATTGGGGCCTAcc aggtgggggagggggcattCATTTTTGACAGCAAGAGATTTTTCCCTCGA TTTATATTCTGTAACCCCTGAAATTTCAACGATTAactttccccgcccct ctcttgACCACATTgaaaaaaaattaaaaaacCCGATGGCTTTCTCCACC GAAACAATCCCCAAAAATTCACCGTCCCTGcactcctccccgcctcgcct cccccccctccaggtcACCCACGCTCACCGCACCATCACCTTCATCGACA CCCCCGGCCATGCCGCTTTCTCGGAAATGCGGGCCCGGGGCGCGAACGTG ACGGACCTGGTCGtcctggtggtggcggcggacGAAGGCGTGAAAGAGCA GACCATCGACTCCATCCGCTGCGCCAAGCAGGCCCACGTGCCCATCCTCC TGGCCGTGAACAAGGTGGACAAGCCGGGGGCGGACCCATCCCGGGTGACG CAGGAGCTGATGAAGGTgaggggtggggatggctgtggggggcggggagg gtgtgTTTGCTCGttgttggggggggggaagtatGTCTGGGTCGCGTCTC CCGGCGATCGCGTCCTTGGACCCCACTtacacccttcctccctccctccc tccctccctccctccctccctccctccctccccagtaCGACGTGCTCTTG GAAGAGTACGGGGGCGACGTCCTTTCCGCCGAGGTCTCGGCCAAGAAGCG CTTGAACCTGGACGGTCTTCTCGAGAAGATCCTCTTGCAGGCGGAAATTC TGGATTTGAAGGCAAACCCGAACCGGTCCGCGGtcggggcggtggtggag tcCCGGATGGAGAAAGGCTTGGGCCCGGTTACCACGGTCCTGGTGCAGAA AGGCACCTTGCGCGTCGGGGATTGCATCGTGGCCGGGGCTGCCTACGGAA AAGTCCGAAGCCTCACGGACGAACGGGGGAAACGGCTGGAAACGGCGGGG CCCTCGGTGCCGGCCGTGCTGAGCGGGTGGGATGGAGTCCCTGCCGCGGG CGATACTTTGATCGTGGTGGAAAGCGAAATGCAAGCCCGGAATGTGGCGG AGGCCCGCCGGCGCTTGGAACGGGAGCGATCGGGGAGTGCGACCATGGGG AGCATGCAGGCCCAAGTCCTGTCGATATTCGGTACGGACGGGGTGAAAAA ACGCCAGGAGGTGACGGTGGTGATCAAAGCCGACGTCCAAGGCTCCGCGG AAGCCATCGCCACGGCCGTGAGTGCCATCCACGTGGAGGACGACCGGGCG GAAGTTGGGGTTAAGGTGTTGTCATCGGGCGTAGGGGATGTCACCCAGAA CGACGTGGCGTTGGCAGGCGTCAGCCAAGCCACGATTTTGGCCTTCAATG TGGCGGCGGACATGAACGCACAGGAGGAAGCCCGGAAGACGGGGGTGGAG ATCGAGTACCACACGGTGATCTACGACATCTTGGACAAGTTGGAGGCGAA GGTGCAAGAGATCTTGTCCCCGACGCCGGAGGGTGAGTACGTGGGCGCGG CCCGGGTGAAAATGGTGTTTGAAATCGGGAAAGTCGGGAAGGTGGCGGGC TGCGAGGTCACGGACGGGACGATCAAGCGGGGGGGCACGGTCCGGGTCTT GCGGGGGAGCGAGATCGTCTACAAGGGCCCTCTGCGCACCCTCCGGAACG TCAAGAGCGATGTGCAGGAGATGAGCGCGGGTCAGGAGTGCGGGATGAGC TTCAAGGACTACGAGGACTTCCGGCCCGACGACATTGTCGAGTGCTACGT ggtggacaagaagaagtagggcgggagggagggcgggggggagggcgagg gggagggcggggcgaggGGCCGATGCCCCGGATCTTAAACCAGAAGAGCG CTACTTgtgaagggatggagagaaggcggtagtgggtgggaggatggaga ggggccaAAGGGGGcccagagggaaggaaggagaggaagggcgtcggggg gaggacgggcgacGGTCGAATCTctcgacgtggaggagggaggggggaag ggagggagaaagggaggtaaGGACGGTGGCAGGGTGGACGAAGGCCTCTT TCTTGttgaagggagggtggagaggggacAGGACTACTTGCACGGCTTAT CCCtcttggggagggagggagggagggagggagggaggaagggcgtgcgA AGGTGTTGTTGGTTGGGAGGGGTGCggatggagaggggatgGGTGTCAAA AATGTggtcgaggggaaggaaagctccATTTGAGAGGAGTTCCTGGGCCG GGAAGGtgatggatgtggaagggCATACGACGGGGATTTTCGGCGGGATT AGCTGAgtaaggggaaagaaggagcgaggagcGTAATGGTAAAGTCTtga caagggaggaagtggctaAAAAGAGATTGAAAGAAGGTTTTTGCATCATG GCAGGCGATCGGAGCCGACGTGGTTGTTGAGATTTTATTTC
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Coding sequence (CDS) from alignment at KK037255.1:106395..109535+

>rna9669 ID=rna9669|Name=rna9669|organism=Nannochloropsis gaditana|type=CDS|length=6264bp|location=Sequence derived from alignment at KK037255.1:106395..109535+ (Nannochloropsis gaditana)
atggtgaTCCCTGCGGTGTCCCCGGCGGatttggaggcggtggaggcggc
gcgtcggaagaaggagaaggagaagttgaagaagggaggcaagtatgggg
aggaagagcgggggggggcgatagggaaaggggggaggggcggggggagg
aaggggggaaggttcgagggcgacgtggaggacgtggacgctgttttggg
ggggggagggagcaagtaccggaagaaggggggaaggaagggcggcaggG
GGGGATACGAAGAGCCCGTGGCCCAAGGGCccaaggtggtggtgctggat
GAACCTACCTTAACCATCGCCGCCCTGAGCGAGCGGATGGACGTGCGGGC
GGGCGAAATCATCAAGTACCTTATGGTAAACATGGGGGTGATGGCGACGA
TCACCCAGAGCATCGACGCGGAGACGGGGGtgcgggtggcggaggccttT
GGCCGGCAGGtccggcgggggcgggaggaggacgagggggagggggagga
cggggaggaggaactgAGCGTGCTCACGGAGGGGTAcggttgggaggagg
aggacgccgcgagcctcctcccacgcgccCCCGTGGTGACGATTATGGGC
CACGTCGACCACGGGAAGACGAGTTTGCTGGACGCTGTGCGGGAGTCGAG
CGTTGCcacgggggaggcgggcgggatcACGCAGCACATTGGGGCCTAcc
aggtcACCCACGCTCACCGCACCATCACCTTCATCGACACCCCCGGCCAT
GCCGCTTTCTCGGAAATGCGGGCCCGGGGCGCGAACGTGACGGACCTGGT
CGtcctggtggtggcggcggacGAAGGCGTGAAAGAGCAGACCATCGACT
CCATCCGCTGCGCCAAGCAGGCCCACGTGCCCATCCTCCTGGCCGTGAAC
AAGGTGGACAAGCCGGGGGCGGACCCATCCCGGGTGACGCAGGAGCTGAT
GAAGtaCGACGTGCTCTTGGAAGAGTACGGGGGCGACGTCCTTTCCGCCG
AGGTCTCGGCCAAGAAGCGCTTGAACCTGGACGGTCTTCTCGAGAAGATC
CTCTTGCAGGCGGAAATTCTGGATTTGAAGGCAAACCCGAACCGGTCCGC
GGtcggggcggtggtggagtcCCGGATGGAGAAAGGCTTGGGCCCGGTTA
CCACGGTCCTGGTGCAGAAAGGCACCTTGCGCGTCGGGGATTGCATCGTG
GCCGGGGCTGCCTACGGAAAAGTCCGAAGCCTCACGGACGAACGGGGGAA
ACGGCTGGAAACGGCGGGGCCCTCGGTGCCGGCCGTGCTGAGCGGGTGGG
ATGGAGTCCCTGCCGCGGGCGATACTTTGATCGTGGTGGAAAGCGAAATG
CAAGCCCGGAATGTGGCGGAGGCCCGCCGGCGCTTGGAACGGGAGCGATC
GGGGAGTGCGACCATGGGGAGCATGCAGGCCCAAGTCCTGTCGATATTCG
GTACGGACGGGGTGAAAAAACGCCAGGAGGTGACGGTGGTGATCAAAGCC
GACGTCCAAGGCTCCGCGGAAGCCATCGCCACGGCCGTGAGTGCCATCCA
CGTGGAGGACGACCGGGCGGAAGTTGGGGTTAAGGTGTTGTCATCGGGCG
TAGGGGATGTCACCCAGAACGACGTGGCGTTGGCAGGCGTCAGCCAAGCC
ACGATTTTGGCCTTCAATGTGGCGGCGGACATGAACGCACAGGAGGAAGC
CCGGAAGACGGGGGTGGAGATCGAGTACCACACGGTGATCTACGACATCT
TGGACAAGTTGGAGGCGAAGGTGCAAGAGATCTTGTCCCCGACGCCGGAG
GGTGAGTACGTGGGCGCGGCCCGGGTGAAAATGGTGTTTGAAATCGGGAA
AGTCGGGAAGGTGGCGGGCTGCGAGGTCACGGACGGGACGATCAAGCGGG
GGGGCACGGTCCGGGTCTTGCGGGGGAGCGAGATCGTCTACAAGGGCCCT
CTGCGCACCCTCCGGAACGTCAAGAGCGATGTGCAGGAGATGAGCGCGGG
TCAGGAGTGCGGGATGAGCTTCAAGGACTACGAGGACTTCCGGCCCGACG
ACATTGTCGAGTGCTACGTggtggacaagaagaagtagatggtgaTCCCT
GCGGTGTCCCCGGCGGatttggaggcggtggaggcggcgcgtcggaagaa
ggagaaggagaagttgaagaagggaggcaagtatggggaggaagagcggg
ggggggcgatagggaaaggggggaggggcggggggaggaaggggggaagg
ttcgagggcgacgtggaggacgtggacgctgttttgggggggggagggag
caagtaccggaagaaggggggaaggaagggcggcaggGGGGGATACGAAG
AGCCCGTGGCCCAAGGGCccaaggtggtggtgctggatGAACCTACCTTA
ACCATCGCCGCCCTGAGCGAGCGGATGGACGTGCGGGCGGGCGAAATCAT
CAAGTACCTTATGGTAAACATGGGGGTGATGGCGACGATCACCCAGAGCA
TCGACGCGGAGACGGGGGtgcgggtggcggaggccttTGGCCGGCAGGtc
cggcgggggcgggaggaggacgagggggagggggaggacggggaggagga
actgAGCGTGCTCACGGAGGGGTAcggttgggaggaggaggacgccgcga
gcctcctcccacgcgccCCCGTGGTGACGATTATGGGCCACGTCGACCAC
GGGAAGACGAGTTTGCTGGACGCTGTGCGGGAGTCGAGCGTTGCcacggg
ggaggcgggcgggatcACGCAGCACATTGGGGCCTAccaggtcACCCACG
CTCACCGCACCATCACCTTCATCGACACCCCCGGCCATGCCGCTTTCTCG
GAAATGCGGGCCCGGGGCGCGAACGTGACGGACCTGGTCGtcctggtggt
ggcggcggacGAAGGCGTGAAAGAGCAGACCATCGACTCCATCCGCTGCG
CCAAGCAGGCCCACGTGCCCATCCTCCTGGCCGTGAACAAGGTGGACAAG
CCGGGGGCGGACCCATCCCGGGTGACGCAGGAGCTGATGAAGtaCGACGT
GCTCTTGGAAGAGTACGGGGGCGACGTCCTTTCCGCCGAGGTCTCGGCCA
AGAAGCGCTTGAACCTGGACGGTCTTCTCGAGAAGATCCTCTTGCAGGCG
GAAATTCTGGATTTGAAGGCAAACCCGAACCGGTCCGCGGtcggggcggt
ggtggagtcCCGGATGGAGAAAGGCTTGGGCCCGGTTACCACGGTCCTGG
TGCAGAAAGGCACCTTGCGCGTCGGGGATTGCATCGTGGCCGGGGCTGCC
TACGGAAAAGTCCGAAGCCTCACGGACGAACGGGGGAAACGGCTGGAAAC
GGCGGGGCCCTCGGTGCCGGCCGTGCTGAGCGGGTGGGATGGAGTCCCTG
CCGCGGGCGATACTTTGATCGTGGTGGAAAGCGAAATGCAAGCCCGGAAT
GTGGCGGAGGCCCGCCGGCGCTTGGAACGGGAGCGATCGGGGAGTGCGAC
CATGGGGAGCATGCAGGCCCAAGTCCTGTCGATATTCGGTACGGACGGGG
TGAAAAAACGCCAGGAGGTGACGGTGGTGATCAAAGCCGACGTCCAAGGC
TCCGCGGAAGCCATCGCCACGGCCGTGAGTGCCATCCACGTGGAGGACGA
CCGGGCGGAAGTTGGGGTTAAGGTGTTGTCATCGGGCGTAGGGGATGTCA
CCCAGAACGACGTGGCGTTGGCAGGCGTCAGCCAAGCCACGATTTTGGCC
TTCAATGTGGCGGCGGACATGAACGCACAGGAGGAAGCCCGGAAGACGGG
GGTGGAGATCGAGTACCACACGGTGATCTACGACATCTTGGACAAGTTGG
AGGCGAAGGTGCAAGAGATCTTGTCCCCGACGCCGGAGGGTGAGTACGTG
GGCGCGGCCCGGGTGAAAATGGTGTTTGAAATCGGGAAAGTCGGGAAGGT
GGCGGGCTGCGAGGTCACGGACGGGACGATCAAGCGGGGGGGCACGGTCC
GGGTCTTGCGGGGGAGCGAGATCGTCTACAAGGGCCCTCTGCGCACCCTC
CGGAACGTCAAGAGCGATGTGCAGGAGATGAGCGCGGGTCAGGAGTGCGG
GATGAGCTTCAAGGACTACGAGGACTTCCGGCCCGACGACATTGTCGAGT
GCTACGTggtggacaagaagaagtagatggtgaTCCCTGCGGTGTCCCCG
GCGGatttggaggcggtggaggcggcgcgtcggaagaaggagaaggagaa
gttgaagaagggaggcaagtatggggaggaagagcgggggggggcgatag
ggaaaggggggaggggcggggggaggaaggggggaaggttcgagggcgac
gtggaggacgtggacgctgttttgggggggggagggagcaagtaccggaa
gaaggggggaaggaagggcggcaggGGGGGATACGAAGAGCCCGTGGCCC
AAGGGCccaaggtggtggtgctggatGAACCTACCTTAACCATCGCCGCC
CTGAGCGAGCGGATGGACGTGCGGGCGGGCGAAATCATCAAGTACCTTAT
GGTAAACATGGGGGTGATGGCGACGATCACCCAGAGCATCGACGCGGAGA
CGGGGGtgcgggtggcggaggccttTGGCCGGCAGGtccggcgggggcgg
gaggaggacgagggggagggggaggacggggaggaggaactgAGCGTGCT
CACGGAGGGGTAcggttgggaggaggaggacgccgcgagcctcctcccac
gcgccCCCGTGGTGACGATTATGGGCCACGTCGACCACGGGAAGACGAGT
TTGCTGGACGCTGTGCGGGAGTCGAGCGTTGCcacgggggaggcgggcgg
gatcACGCAGCACATTGGGGCCTAccaggtcACCCACGCTCACCGCACCA
TCACCTTCATCGACACCCCCGGCCATGCCGCTTTCTCGGAAATGCGGGCC
CGGGGCGCGAACGTGACGGACCTGGTCGtcctggtggtggcggcggacGA
AGGCGTGAAAGAGCAGACCATCGACTCCATCCGCTGCGCCAAGCAGGCCC
ACGTGCCCATCCTCCTGGCCGTGAACAAGGTGGACAAGCCGGGGGCGGAC
CCATCCCGGGTGACGCAGGAGCTGATGAAGtaCGACGTGCTCTTGGAAGA
GTACGGGGGCGACGTCCTTTCCGCCGAGGTCTCGGCCAAGAAGCGCTTGA
ACCTGGACGGTCTTCTCGAGAAGATCCTCTTGCAGGCGGAAATTCTGGAT
TTGAAGGCAAACCCGAACCGGTCCGCGGtcggggcggtggtggagtcCCG
GATGGAGAAAGGCTTGGGCCCGGTTACCACGGTCCTGGTGCAGAAAGGCA
CCTTGCGCGTCGGGGATTGCATCGTGGCCGGGGCTGCCTACGGAAAAGTC
CGAAGCCTCACGGACGAACGGGGGAAACGGCTGGAAACGGCGGGGCCCTC
GGTGCCGGCCGTGCTGAGCGGGTGGGATGGAGTCCCTGCCGCGGGCGATA
CTTTGATCGTGGTGGAAAGCGAAATGCAAGCCCGGAATGTGGCGGAGGCC
CGCCGGCGCTTGGAACGGGAGCGATCGGGGAGTGCGACCATGGGGAGCAT
GCAGGCCCAAGTCCTGTCGATATTCGGTACGGACGGGGTGAAAAAACGCC
AGGAGGTGACGGTGGTGATCAAAGCCGACGTCCAAGGCTCCGCGGAAGCC
ATCGCCACGGCCGTGAGTGCCATCCACGTGGAGGACGACCGGGCGGAAGT
TGGGGTTAAGGTGTTGTCATCGGGCGTAGGGGATGTCACCCAGAACGACG
TGGCGTTGGCAGGCGTCAGCCAAGCCACGATTTTGGCCTTCAATGTGGCG
GCGGACATGAACGCACAGGAGGAAGCCCGGAAGACGGGGGTGGAGATCGA
GTACCACACGGTGATCTACGACATCTTGGACAAGTTGGAGGCGAAGGTGC
AAGAGATCTTGTCCCCGACGCCGGAGGGTGAGTACGTGGGCGCGGCCCGG
GTGAAAATGGTGTTTGAAATCGGGAAAGTCGGGAAGGTGGCGGGCTGCGA
GGTCACGGACGGGACGATCAAGCGGGGGGGCACGGTCCGGGTCTTGCGGG
GGAGCGAGATCGTCTACAAGGGCCCTCTGCGCACCCTCCGGAACGTCAAG
AGCGATGTGCAGGAGATGAGCGCGGGTCAGGAGTGCGGGATGAGCTTCAA
GGACTACGAGGACTTCCGGCCCGACGACATTGTCGAGTGCTACGTggtgg
acaagaagaagtag
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Synonyms
Publications