EWM21089.1, cds9584 (CDS) Nannochloropsis gaditana

Overview
NameEWM21089.1
Unique Namecds9584
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:287469..287573 +
Alignment locationKK037254.1:287664..287818 +
Alignment locationKK037254.1:287983..288175 +

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Properties
Property NameValue
End range.
End range288175
Protein idEWM21089.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101039g1.7426.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:287469..287573 +
KK037254.1supercontigKK037254.1:287664..287818 +
KK037254.1supercontigKK037254.1:287983..288175 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21089.1 vs. NCBI_GenBank
Match: gi|585101150|gb|EWM21089.1| (hypothetical protein Naga_101039g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 303.908 bits (777), Expect = 1.758e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:    1 MLLQRAPSILLAGGRKALTRPGRILVDNTPRRVTETVPTMAHTAALMARGCGARPSLFMPVLTNPVRTFSVGFGGLQYDTLTEMQEKACKRYGPKPFLGCRPPNGGPFEFITFSDFDEQVNRARVLLHEAGVGRGDKVGGREGGREGGREG 151
            MLLQRAPSILLAGGRKALTRPGRILVDNTPRRVTETVPTMAHTAALMARGCGARPSLFMPVLTNPVRTFSVGFGGLQYDTLTEMQEKACKRYGPKPFLGCRPPNGGPFEFITFSDFDEQVNRARVLLHEAGVGRGDKVGGREGGREGGREG
Sbjct:    1 MLLQRAPSILLAGGRKALTRPGRILVDNTPRRVTETVPTMAHTAALMARGCGARPSLFMPVLTNPVRTFSVGFGGLQYDTLTEMQEKACKRYGPKPFLGCRPPNGGPFEFITFSDFDEQVNRARVLLHEAGVGRGDKVGGREGGREGGREG 151          
BLAST of EWM21089.1 vs. NCBI_GenBank
Match: gi|1210527370|dbj|GAX14005.1| (long-chain acyl-CoA synthetase [Fistulifera solaris])

HSP 1 Score: 65.855 bits (159), Expect = 1.072e-9
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0
Query:   76 LQYDTLTEMQEKACKRYGPKPFLGCRPPNGGPFEFITFSDFDEQVNRARVLLHEAGVGRGDKVGGREGGR 145
            L +DTL EMQ +AC+ + PK   G        FEF++F +F +QV+  R LL + G+G  DKVG     R
Sbjct:   53 LNFDTLHEMQVRACQVFAPKRLFGTYSETSNQFEFMSFGEFGQQVDHVRALLKDLGIGEHDKVGVISNNR 122          
BLAST of EWM21089.1 vs. NCBI_GenBank
Match: gi|1210523750|dbj|GAX17432.1| (long-chain acyl-CoA synthetase [Fistulifera solaris])

HSP 1 Score: 65.0846 bits (157), Expect = 1.786e-9
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0
Query:   76 LQYDTLTEMQEKACKRYGPKPFLGCRPPNGGPFEFITFSDFDEQVNRARVLLHEAGVGRGDKVGGREGGR 145
            L +DTL EMQ +AC+ + PK   G        FEF++F +F +QV+  R LL + G+G  DKVG     R
Sbjct:   53 LNFDTLHEMQVRACQVFAPKRLFGTYSEASNQFEFMSFGEFGQQVDHVRALLKDLGIGEHDKVGVISNNR 122          
BLAST of EWM21089.1 vs. NCBI_GenBank
Match: gi|553185155|ref|XP_005854208.1| (long-chain acyl-CoA ligase [Nannochloropsis gaditana CCMP526] >gi|422294847|gb|EKU22147.1| long-chain acyl-CoA ligase [Nannochloropsis gaditana CCMP526] >gi|585101848|gb|EWM21593.1| amp-dependent synthetase and ligase [Nannochloropsis gaditana])

HSP 1 Score: 60.4622 bits (145), Expect = 7.763e-8
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 0
Query:   78 YDTLTEMQEKACKRYGPKPFLGCRPPNGGPFEFITFSDFDEQVNRARVLLHEAGVGRGDKVGGREGGR 145
            + TL EMQ+   +  G K FLG +P     +++IT+  F++ V +A+ +L EAG+G GDKV    G R
Sbjct:   50 FTTLVEMQQSVARTQGKKDFLGYKPCPSSKYKWITYQAFNDMVGKAKFVLREAGIGPGDKVAALSGNR 117          
The following BLAST results are available for this feature:
BLAST of EWM21089.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585101150|gb|EWM21089.1|1.758e-104100.00hypothetical protein Naga_101039g1, partial [Nanno... [more]
gi|1210527370|dbj|GAX14005.1|1.072e-941.43long-chain acyl-CoA synthetase [Fistulifera solari... [more]
gi|1210523750|dbj|GAX17432.1|1.786e-941.43long-chain acyl-CoA synthetase [Fistulifera solari... [more]
gi|553185155|ref|XP_005854208.1|7.763e-839.71long-chain acyl-CoA ligase [Nannochloropsis gadita... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9615rna9615Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications