EWM21131.1, cds9575 (CDS) Nannochloropsis gaditana

Overview
NameEWM21131.1
Unique Namecds9575
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:271736..272122 -
Alignment locationKK037254.1:271414..271581 -
Alignment locationKK037254.1:271034..271267 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21131.1
Productprotein of unknown function DUF2059
Orig transcript idgnl|cribi|Naga_100041g48.3701.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:271736..272122 -
KK037254.1supercontigKK037254.1:271414..271581 -
KK037254.1supercontigKK037254.1:271034..271267 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018637DUF2059
Homology
BLAST of EWM21131.1 vs. NCBI_GenBank
Match: gi|585101198|gb|EWM21131.1| (protein of unknown function DUF2059 [Nannochloropsis gaditana])

HSP 1 Score: 531.176 bits (1367), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query:    1 MVIPSKRRRIPYLFLFLFFSIVLLLAWAPRSMAAKAKNAKTKDTIKQKKGQKEQKSPQMKKQGETATPKRQQKQQQRPREKLEDLSLMDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSGPGLQGQGQGPQEWQDQQALYSSKGTTVYMNEGKPKGRQKEQGKKRAAARAGPASANGGDGEL 262
            MVIPSKRRRIPYLFLFLFFSIVLLLAWAPRSMAAKAKNAKTKDTIKQKKGQKEQKSPQMKKQGETATPKRQQKQQQRPREKLEDLSLMDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSGPGLQGQGQGPQEWQDQQALYSSKGTTVYMNEGKPKGRQKEQGKKRAAARAGPASANGGDGEL
Sbjct:    1 MVIPSKRRRIPYLFLFLFFSIVLLLAWAPRSMAAKAKNAKTKDTIKQKKGQKEQKSPQMKKQGETATPKRQQKQQQRPREKLEDLSLMDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSGPGLQGQGQGPQEWQDQQALYSSKGTTVYMNEGKPKGRQKEQGKKRAAARAGPASANGGDGEL 262          
BLAST of EWM21131.1 vs. NCBI_GenBank
Match: gi|553181158|ref|XP_005853520.1| (hypothetical protein NGA_0269602 [Nannochloropsis gaditana CCMP526] >gi|422295538|gb|EKU22837.1| hypothetical protein NGA_0269602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 528.865 bits (1361), Expect = 0.000e+0
Identity = 261/262 (99.62%), Postives = 261/262 (99.62%), Query Frame = 0
Query:    1 MVIPSKRRRIPYLFLFLFFSIVLLLAWAPRSMAAKAKNAKTKDTIKQKKGQKEQKSPQMKKQGETATPKRQQKQQQRPREKLEDLSLMDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSGPGLQGQGQGPQEWQDQQALYSSKGTTVYMNEGKPKGRQKEQGKKRAAARAGPASANGGDGEL 262
            MVI SKRRRIPYLFLFLFFSIVLLLAWAPRSMAAKAKNAKTKDTIKQKKGQKEQKSPQMKKQGETATPKRQQKQQQRPREKLEDLSLMDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSGPGLQGQGQGPQEWQDQQALYSSKGTTVYMNEGKPKGRQKEQGKKRAAARAGPASANGGDGEL
Sbjct:    1 MVISSKRRRIPYLFLFLFFSIVLLLAWAPRSMAAKAKNAKTKDTIKQKKGQKEQKSPQMKKQGETATPKRQQKQQQRPREKLEDLSLMDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSGPGLQGQGQGPQEWQDQQALYSSKGTTVYMNEGKPKGRQKEQGKKRAAARAGPASANGGDGEL 262          
BLAST of EWM21131.1 vs. NCBI_GenBank
Match: gi|501124751|ref|WP_012173848.1| (DUF2059 domain-containing protein [Desulfococcus oleovorans] >gi|158509262|gb|ABW66229.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3])

HSP 1 Score: 62.003 bits (149), Expect = 2.060e-8
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 0
Query:   88 MDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAIL--ESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEA 192
            ++DT  NRQ  AAR +K TP  ++++ + Q+ +     E  EE  KA+L    D  A T++M+ +    F+A+EL  +AD+  S VGK    K   Y+  + PA++A
Sbjct:   19 LEDTPSNRQKEAARYLKTTPPADMMKDMAQKVSMNLPPENREEF-KALLTKHLDLEAFTKIMKDSMEKHFTADELKALADFYGSPVGKSAMNKFGDYMGDIMPAIQA 124          
BLAST of EWM21131.1 vs. NCBI_GenBank
Match: gi|1086593019|emb|SDD78939.1| (hypothetical protein SAMN05421720_101545 [Rhodospira trueperi])

HSP 1 Score: 57.3806 bits (137), Expect = 9.338e-7
Identity = 38/114 (33.33%), Postives = 56/114 (49.12%), Query Frame = 0
Query:   88 MDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEE-IRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSG 200
            ++DT  NR   A R  +  P  ++LE  V   AR+   E  +  I  A+L  D   L   +  A   TFSA+EL  +AD+  S VG+ V RKM +Y  +V P +    +   +G
Sbjct:   23 LEDTAANRWAQAVRYERAVPTDDVLETSVVRVARMLPPEHRQPFIDYAVLRIDRDGLRDSVLTALTETFSADELRAMADFFGSPVGQSVARKMGRYTERVMPLVMTVVRATATG 136          
The following BLAST results are available for this feature:
BLAST of EWM21131.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585101198|gb|EWM21131.1|0.000e+0100.00protein of unknown function DUF2059 [Nannochlorops... [more]
gi|553181158|ref|XP_005853520.1|0.000e+099.62hypothetical protein NGA_0269602 [Nannochloropsis ... [more]
gi|501124751|ref|WP_012173848.1|2.060e-834.58DUF2059 domain-containing protein [Desulfococcus o... [more]
gi|1086593019|emb|SDD78939.1|9.338e-733.33hypothetical protein SAMN05421720_101545 [Rhodospi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9606rna9606Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications