rna9605, rna9605 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9605
Unique Name	rna9605
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2113
Alignment location	KK037254.1:269913..271333 +

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Properties


Property Name	Value
Product	Proteasome assembly chaperone 3
Orig transcript id	gnl\|cribi\|Naga_100041g47.3695.mrna
Orig protein id	gnl\|cribi\|Naga_100041g47.3695
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:269913..271333 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g47	gene9323	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9605	rna9605-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21125.1	cds9574	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:269913..271333+
coding sequence from alignment at KK037254.1:269913..271333+

mRNA sequence

>rna9605 ID=rna9605|Name=rna9605|organism=Nannochloropsis gaditana|type=mRNA|length=2113bp
GATGCAAACTGGTGTTCGACGGCAAGTAAAATTGAGTAGCGTGGCTGTCC
TGGCGAGCAGCGATGACCAAGCCGGCGTGGTGGCTGGATCTCTCTTGTGC
TGCCACCCTTTTTACGTGTATACGGTAACACATTGCAAGATAACCGGTTC
ATAACGTCAAAAATATATTGCACAAGAAAATGAAATTTAACATGAGAGTT
CTGACGGTCTAATCTTCTCAATTTTCGTCTTGCCTGGGCGGTGCATGGCA
CGCGTTATACCCACCAAAAGTGGTTCAAGTAACCTCATGTACCCTGGACG
CGTCTTTTTCAAACCCTTACAGCTTCAGCAAGGCCATGGGTTGGACACGG
AGAAGAATAGATCACTCTTGTTATTCTGTTCCTATGTGCTTGGTCCTCGC
CTTCGTGGGAGTTGTCGTCCTGCTGGCAGCCCCGGCCCGAGCTTTCCTCC
CTGCGCCCCTGTCAGTGTCCTACTCCTCCCTAGCCTCAGCCCCCTGCTCG
CCGAGTGCCGTCACTGGCCGTTCCAGGAGACCTCACATGAGAGCCGGACC
CAGTGAGGAATCAGGTGCAAGAAGACGGCCCGAGGAACGAGGTCTTGGGC
CGGCGCCCTTGGAGTGGTGGGCCGATCCGCAGGCGACCCGGCGTCTCCTC
GACCCCGCGGCGAAGGAGAGGCCGGTCTCCGGGAATCAGGCGAGGTCGCC
GGGTTTCTGGTTCAAAGATGTCCTCTCCTTGCAAGCCCTGAAGCGAAGGG
CGTTCTCTTTGGCCGTACCGGTGCTTTTGGCCGTGAACTGGGGCAGTCTC
TTTTCGGGGGGAATGCTTCACCCGCCCGTGGCGGCCGCGGTGGACAGTAT
CAAGGTGGGGACGTGTCTGCTGAAGGAGTGCCAGCTCGAGCTCGCCCGGT
GCATTCTTGACCCCAAGTGCCTGGCGAACGTGATCTGCCTGAACACGTGC
AACAACAAGGCGGACGAGGTCGGGTGCCAGATCGGTTGCGGGGACCTGTT
CGAGAACGAGGTGGTGGGGCAGTTCAACGCCTGCGCGCTCAGCAAGAAGC
AGTGCGTGCCGCGGAAGGAGGACGACGGGACCTACCCGGTGCCCCCCGAC
TCGGCGCTGGTCTCGTCCTTCGACATGAACACCTTCAAGGGCAAGTGGTA
CATCAGCGCGGGCCTGAATCCGCTCTTCGACTGCTTCGACTGCCAGGTCC
ACTTCTTCACCGTGCAGGGCGACCGGCTCTACGGAAAGCTGAACTGGCGC
ATCACGGAACCGGACGGGGAGTTCTTCACGCGGGACACGGTGCAGCGCTT
CGTGCAGGACCCGCGCGCCCCGGGCAAGCTCTACAACCACGACAACGAGT
ACCTCCACTACCAGGACGACTGGTACATCCTCGACTACGAACCCAACGTC
TTCATCGCCGTCTACTACCGGGGCCAGAACGACGCCTGGACCGGCTACGG
CGGGGGCGTCGTCTACACGAAGCAGTCGAGCGTCCCCCCCGAGTACAAGA
AGCGCATCGCCGCCGCCTTCGCGAAAGCCAACGTGGACTATGCCCGCTTC
AAGGACGTGGACAACTCCTGCAGCGACTTGAAGGAGAACCCGACGGCGCT
GCGGGCCGAGTTCGCGCGGAGACTCTTCCTGACAGAGGAGCAGCAGCTGC
AGGAGGCGCTGACCACCGCGCGGGTGACGGCGGGAAACGCGATCATGATG
GAGGAGAAGGAGGCGCAAGCGGCGGTCAAGGAGCTGGAGCGTGTCATCTC
GGAGTTTGAGGGGCGGGTGGGGAAGGAGGTGGGCCGCGAGGTGGAGAATT
TGGAGAAGGAGCTGGTCAAAGAGGTGCAGCAGGTGGAGCGCGTGATCGAT
ACCGGCCTGTGGCGGGCCAACAACAAGCCGAATCTGGACTCTCTCGCGCA
GCGCCTGGAGGAGAGGCCGCTGGCGGATCCACGGCCCGCGCCTAAGTGAG
GAGGGGTCGGAGGGAGGCCTGGGGGCAGAGGCAGGGCTGGAGAGAGGGGA
GGGCGTGTGCGAGAAGGAAGGGCGCGGAGGCTCGGCTCAGCAAATTAGAA
AGACAGCATCTCGAAATTAAAGAGGAAGTATCAGTGTGTCAAAACAAAGT
GTTTTATTTTTTT

protein sequence of rna9605

>rna9605-protein ID=rna9605-protein|Name=rna9605|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MCYRIHVKRVAAQERSSHHAGLVIAARQDSHATQFYLPSNTSLHPSTPFR
HRLAVHTSPAMRASSSGPPEASTYHETKEINGVLTDVAIFNFSDRIFLTI
SQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVE
TVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL

mRNA from alignment at KK037254.1:269913..271333+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9605 ID=rna9605|Name=rna9605|organism=Nannochloropsis gaditana|type=mRNA|length=1421bp|location=Sequence derived from alignment at KK037254.1:269913..271333+ (Nannochloropsis gaditana)
ATGTGTTACCGTATACACGTAAAAAGGGTGGCAGCACAAGAGAGATCCAG
CCACCACGCCGGCTTGGTCATCGCTGCTCGCCAGGACAGCCACGCTACTC
AATTTTACTTGCCGTCGAACACCAGTTTGCATCCATCCACTCCCTTTCGG
CACAGGCTGGCAGTCCATACGAGCCCTGCGATGAGGGCATCCTCGTCGGG
ACCCCCTGAGGCCTCCACCTACCACGAAACCAAGGTACCACGTGttctac
ctccccacccccccacGCCGGCGGACCCCCTTCTGAGctaccccctccct
gtcttacGTTCTATCAGGAGATTAACGGCGTCCTCACAGATGTTGCCATT
TTCAATTTCAGTGACCGAATATTCCTTACGATCTCGCAAAATGCTCGGTT
TGGGACCCTGgtaggtgggagggaggcggtgcagGGTATGTAGGCTCGTC
CGTCAACAAGTTGAGCTTAGGTTTCAGGAGGCTTGTGCCTCGTGTCTCGG
TTTCAAGCTGTAGAGCATAATCCAGTGCGCGAGACAGCGTTAGGTTTCCT
CGCCGGATTCGTTTGTCATGGGGCTTCATCTGATCTCGGTAGTAGACGAA
CATTGGAGGCGACCTCTTTAGACATCGTACTCAAAGAAACCCTGATCCTG
ACAGATATCAGCCAAAGCTGACGACAGCGTGGCTCGTCCAGgcgctgctc
cctccttcgatgTGAGTGTACTCCTCGGCCGACGCGATGACCCCCTACTC
CTCATCTACGCGCGCCAGCTTGTAGAGACAGTGagcagatcctcctcccg
cccgctcctgctctcAATATCCCTGAGGGAACGGGATCCAAGCACATTCG
AGCAGGTAGCGGCCTGGGTTAGGCCCTTACTCTGATATCGGACGATCAGA
GCCCGGCTTCCAGCGAGCAACGATGTACAGAAAGGGGGGCAAGTAAAGAC
GGAAAAGCAAGAAGTGACTCGGAACCAGGGCGTCTTTCCCGTTTGTTCTC
AGTTTTGGCCCCCGCATGATCTATCAACCCGCTGTCTGCGGAACATTTGC
TCCCTCAAAACCGACCCGACACAACGAGAACCCGCACAATCTGCCACCCT
GGAGGACGTTCTCCACATCGCCTAGAGTTCCCCATCGCCGCCGTTGGCAC
TGGCGGGGCCCGCGCGGGCCGctgcccttttcttcccctgctccttttGC
CTGCCCTTGGGCTTTCCCTCGTTCATGTAGACAGTGGTGCCCTTGGAGGA
GTAGAGGGCCTGCTGGTCCTGCCACTCCTGTGGCCCCTGTCCCTGGCCCT
GCAGCCCCGGGCCCGAGAACACCTCCTTGGTGAAGGCCTCCATGGCGGGC
GTGACCTGGTTGGTGAGTGCTTTCGCCCATGAGAAGCGGCCGCTCCTGCT
TACCCTGCCAGAGGTGCCACA

Coding sequence (CDS) from alignment at KK037254.1:269913..271333+

>rna9605 ID=rna9605|Name=rna9605|organism=Nannochloropsis gaditana|type=CDS|length=1674bp|location=Sequence derived from alignment at KK037254.1:269913..271333+ (Nannochloropsis gaditana)
ATGTGTTACCGTATACACGTAAAAAGGGTGGCAGCACAAGAGAGATCCAG
CCACCACGCCGGCTTGGTCATCGCTGCTCGCCAGGACAGCCACGCTACTC
AATTTTACTTGCCGTCGAACACCAGTTTGCATCCATCCACTCCCTTTCGG
CACAGGCTGGCAGTCCATACGAGCCCTGCGATGAGGGCATCCTCGTCGGG
ACCCCCTGAGGCCTCCACCTACCACGAAACCAAGGAGATTAACGGCGTCC
TCACAGATGTTGCCATTTTCAATTTCAGTGACCGAATATTCCTTACGATC
TCGCAAAATGCTCGGTTTGGGACCCTGATATCAGCCAAAGCTGACGACAG
CGTGGCTCGTCCAGgcgctgctccctccttcgatgTGAGTGTACTCCTCG
GCCGACGCGATGACCCCCTACTCCTCATCTACGCGCGCCAGCTTGTAGAG
ACAGTGagcagatcctcctcccgcccgctcctgctctcAATATCCCTGAG
GGAACGGGATCCAAGCACATTCGAGCAGGTAGCGGCCTGGGTTAGGCCCT
TACTCTGAATGTGTTACCGTATACACGTAAAAAGGGTGGCAGCACAAGAG
AGATCCAGCCACCACGCCGGCTTGGTCATCGCTGCTCGCCAGGACAGCCA
CGCTACTCAATTTTACTTGCCGTCGAACACCAGTTTGCATCCATCCACTC
CCTTTCGGCACAGGCTGGCAGTCCATACGAGCCCTGCGATGAGGGCATCC
TCGTCGGGACCCCCTGAGGCCTCCACCTACCACGAAACCAAGGAGATTAA
CGGCGTCCTCACAGATGTTGCCATTTTCAATTTCAGTGACCGAATATTCC
TTACGATCTCGCAAAATGCTCGGTTTGGGACCCTGATATCAGCCAAAGCT
GACGACAGCGTGGCTCGTCCAGgcgctgctccctccttcgatgTGAGTGT
ACTCCTCGGCCGACGCGATGACCCCCTACTCCTCATCTACGCGCGCCAGC
TTGTAGAGACAGTGagcagatcctcctcccgcccgctcctgctctcAATA
TCCCTGAGGGAACGGGATCCAAGCACATTCGAGCAGGTAGCGGCCTGGGT
TAGGCCCTTACTCTGAATGTGTTACCGTATACACGTAAAAAGGGTGGCAG
CACAAGAGAGATCCAGCCACCACGCCGGCTTGGTCATCGCTGCTCGCCAG
GACAGCCACGCTACTCAATTTTACTTGCCGTCGAACACCAGTTTGCATCC
ATCCACTCCCTTTCGGCACAGGCTGGCAGTCCATACGAGCCCTGCGATGA
GGGCATCCTCGTCGGGACCCCCTGAGGCCTCCACCTACCACGAAACCAAG
GAGATTAACGGCGTCCTCACAGATGTTGCCATTTTCAATTTCAGTGACCG
AATATTCCTTACGATCTCGCAAAATGCTCGGTTTGGGACCCTGATATCAG
CCAAAGCTGACGACAGCGTGGCTCGTCCAGgcgctgctccctccttcgat
gTGAGTGTACTCCTCGGCCGACGCGATGACCCCCTACTCCTCATCTACGC
GCGCCAGCTTGTAGAGACAGTGagcagatcctcctcccgcccgctcctgc
tctcAATATCCCTGAGGGAACGGGATCCAAGCACATTCGAGCAGGTAGCG
GCCTGGGTTAGGCCCTTACTCTGA

Synonyms

Publications