EWM21125.1, cds9574 (CDS) Nannochloropsis gaditana

Overview
NameEWM21125.1
Unique Namecds9574
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:269913..270146 +
Alignment locationKK037254.1:270230..270322 +
Alignment locationKK037254.1:270567..270797 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21125.1
ProductProteasome assembly chaperone 3
Orig transcript idgnl|cribi|Naga_100041g47.3695.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:269913..270146 +
KK037254.1supercontigKK037254.1:270230..270322 +
KK037254.1supercontigKK037254.1:270567..270797 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR018788Proteasome_assmbl_chp_3
Homology
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|585101192|gb|EWM21125.1| (Proteasome assembly chaperone 3 [Nannochloropsis gaditana])

HSP 1 Score: 374.015 bits (959), Expect = 4.492e-131
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query:    1 MCYRIHVKRVAAQERSSHHAGLVIAARQDSHATQFYLPSNTSLHPSTPFRHRLAVHTSPAMRASSSGPPEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185
            MCYRIHVKRVAAQERSSHHAGLVIAARQDSHATQFYLPSNTSLHPSTPFRHRLAVHTSPAMRASSSGPPEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL
Sbjct:    1 MCYRIHVKRVAAQERSSHHAGLVIAARQDSHATQFYLPSNTSLHPSTPFRHRLAVHTSPAMRASSSGPPEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|566028629|gb|ETI51540.1| (hypothetical protein F443_05131 [Phytophthora parasitica P1569] >gi|567965979|gb|ETK91439.1| hypothetical protein L915_04993 [Phytophthora parasitica] >gi|567994697|gb|ETL44849.1| hypothetical protein L916_04941 [Phytophthora parasitica] >gi|570956322|gb|ETP21328.1| hypothetical protein F441_05131 [Phytophthora parasitica CJ01A1] >gi|570991533|gb|ETP49254.1| hypothetical protein F442_05189 [Phytophthora parasitica P10297] >gi|970648117|gb|KUF87750.1| Proteasome assembly chaperone 3 [Phytophthora nicotianae])

HSP 1 Score: 101.679 bits (252), Expect = 2.302e-24
Identity = 53/126 (42.06%), Postives = 76/126 (60.32%), Query Frame = 0
Query:   63 ASSSGPPEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVA---RPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185
            A ++ PP   T  + K+INGV TD+A+  F+DR+F+ ++Q   FGTL+ A   DS++   +P      D+ V LGRRDDPLLL+YARQ +E        P+L +I L++R   TFE V   V+ L 
Sbjct:    2 AEATAPPALHTKKDRKDINGVSTDIAVSIFADRVFIAVTQLGTFGTLVEAHQKDSISGKFQP------DIHVRLGRRDDPLLLVYARQFLEHFGIPVGLPILAAIGLKDRSSGTFEVVMQSVKELF 121          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|675187255|ref|XP_008902512.1| (hypothetical protein PPTG_09334 [Phytophthora parasitica INRA-310] >gi|568023959|gb|ETL98004.1| hypothetical protein L917_04840 [Phytophthora parasitica] >gi|568054382|gb|ETM51165.1| hypothetical protein L914_04948 [Phytophthora parasitica] >gi|568097812|gb|ETN12554.1| hypothetical protein PPTG_09334 [Phytophthora parasitica INRA-310] >gi|570332353|gb|ETO80301.1| hypothetical protein F444_05168 [Phytophthora parasitica P1976])

HSP 1 Score: 100.523 bits (249), Expect = 6.354e-24
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 0
Query:   63 ASSSGPPEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVA---RPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185
            A ++ PP   T  + K+INGV TD+A+  F DR+F+ ++Q   FGTL+ A   DS++   +P      D+ V LGRRDDPLLL+YARQ +E        P+L +I L++R   TFE V   V+ L 
Sbjct:    2 AEATAPPALHTKKDRKDINGVSTDIAVSIFVDRVFIAVTQLGTFGTLVEAHQKDSISGKFQP------DIHVRLGRRDDPLLLVYARQFLEHFGIPVGLPILAAIGLKDRSSGTFEVVMQSVKELF 121          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|695416214|ref|XP_009526780.1| (hypothetical protein PHYSODRAFT_351247 [Phytophthora sojae] >gi|348677905|gb|EGZ17722.1| hypothetical protein PHYSODRAFT_351247 [Phytophthora sojae])

HSP 1 Score: 100.138 bits (248), Expect = 7.234e-24
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 0
Query:   63 ASSSGPPEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185
            A  + PP   T  E KEINGV TD+A+  F+DR+F+  +Q   FGTL+ A   DS++        D+ V LGRRDDPLLL+YARQ +E        P+L +I L++R   TFE V   V+ L 
Sbjct:    2 AEVAPPPALHTQKERKEINGVPTDIAVSIFADRVFIVATQLGTFGTLVEAHQKDSIS---GKLQPDIHVRLGRRDDPLLLVYARQFLEHFGVPVGLPILAAIGLKDRSSDTFEVVMQSVKELF 121          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|1214686228|gb|OWZ02976.1| (hypothetical protein PHMEG_00025369 [Phytophthora megakarya])

HSP 1 Score: 97.4413 bits (241), Expect = 9.585e-23
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 0
Query:   61 MRASSSGPPEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185
            M  + + P    T  + KEINGV TD+A+  F+DR+F+ ++Q   FGTL+ A   DS++        D+ V LGRRDDPLLL+YARQ +E        P+L +I L++R   TFE V   V+ L 
Sbjct:    1 MAIAETTPAALHTKKDRKEINGVPTDIAVSIFADRVFIAVTQLGTFGTLVEACQKDSIS---GKLQPDIHVRLGRRDDPLLLVYARQFLEHFGVPLGLPILAAIGLKDRSSDTFEVVMQSVKELF 122          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|953497084|emb|CEG41393.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 96.6709 bits (239), Expect = 1.601e-22
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0
Query:   68 PPEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185
            PP   T  + K ING+ TD A+  F+DR+F+ ++Q   FGTL+ A   D+++  G   S D+ V LGRRDDPLLL+YARQL+E        P+L++I L++R   TFE V   V+ L 
Sbjct:    7 PPAVYTKTDWKIINGLPTDFAVSIFADRVFIAVTQLGTFGTLLEAYQKDTIS--GKLQS-DIHVRLGRRDDPLLLVYARQLLEHFGVPVGLPVLVAIGLKDRSSQTFEVVMKCVKELF 121          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|301100812|ref|XP_002899495.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103803|gb|EEY61855.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 95.5153 bits (236), Expect = 4.241e-22
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = 0
Query:   69 PEASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185
            P   T  + K+INGV TD+A+  F+DR+F+ ++Q   FGTL+ A   DS++        D+ + LGRRDDPLLL+YARQ +E        P+L +I L++R   TFE V   V+ L 
Sbjct:    8 PALHTKKDRKDINGVPTDIAVSIFADRVFIAVTQLGTFGTLVEAYQKDSIS---GKFQPDIHIRLGRRDDPLLLVYARQFLEHFGIPVGLPILAAIGLKDRSSGTFEAVMQSVKELF 121          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|66827883|ref|XP_647296.1| (proteasome assembly chaperone 3 [Dictyostelium discoideum AX4] >gi|74859465|sp|Q55G88.1|PSMG3_DICDI RecName: Full=Proteasome assembly chaperone 3 >gi|60475779|gb|EAL73714.1| proteasome assembly chaperone 3 [Dictyostelium discoideum AX4])

HSP 1 Score: 94.3597 bits (233), Expect = 2.055e-21
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   77 TKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQV 177
            +K+IN V TD+AI +F+D IF+TISQN +F T I A   D +      PS+ +  LLG   D L  IYARQL+E +  +S++ L+LSIS+ ++   TF+Q+
Sbjct:   37 SKKINNVDTDIAISSFADAIFITISQNQKFNTWIRASKSDGILLD--EPSYQIDTLLGNNQDVLFSIYARQLIENIGETSNKSLMLSISITDKSKDTFKQI 135          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|330843370|ref|XP_003293629.1| (hypothetical protein DICPUDRAFT_158520 [Dictyostelium purpureum] >gi|325076031|gb|EGC29855.1| hypothetical protein DICPUDRAFT_158520 [Dictyostelium purpureum])

HSP 1 Score: 93.5893 bits (231), Expect = 3.523e-21
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   77 TKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQV 177
            +K+IN + TD+AI  F+D +F+TISQN +F T I A   + V      PS+ V VLLG   D LL IYARQL+E +  SS R LLLSIS+ ++   +F+Q+
Sbjct:   33 SKKINNIDTDIAISVFADTVFITISQNQKFNTWIKAYKSEGVLLD--EPSYQVDVLLGSNQDTLLGIYARQLIENIGLSSRRQLLLSISITDKSKDSFKQI 131          
BLAST of EWM21125.1 vs. NCBI_GenBank
Match: gi|1013947991|gb|KYR01656.1| (proteasome assembly chaperone 3 [Dictyostelium lacteum])

HSP 1 Score: 93.5893 bits (231), Expect = 4.202e-21
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 0
Query:   71 ASTYHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFE 175
              T + +K IN + TD+ I +FS++IF+TISQN +F T I     +S       P + V  LLG   D LL+IYARQL+E + +SS++ LLLSIS++++   TF+
Sbjct:   30 VKTKNISKLINNIQTDIVISSFSNQIFITISQNQKFNTWIQGYKQESTF--SDEPCYTVETLLGNNQDQLLMIYARQLIENIGQSSNKTLLLSISIQDKSKDTFK 132          
The following BLAST results are available for this feature:
BLAST of EWM21125.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101192|gb|EWM21125.1|4.492e-131100.00Proteasome assembly chaperone 3 [Nannochloropsis g... [more]
gi|566028629|gb|ETI51540.1|2.302e-2442.06hypothetical protein F443_05131 [Phytophthora para... [more]
gi|675187255|ref|XP_008902512.1|6.354e-2442.06hypothetical protein PPTG_09334 [Phytophthora para... [more]
gi|695416214|ref|XP_009526780.1|7.234e-2443.90hypothetical protein PHYSODRAFT_351247 [Phytophtho... [more]
gi|1214686228|gb|OWZ02976.1|9.585e-2341.60hypothetical protein PHMEG_00025369 [Phytophthora ... [more]
gi|953497084|emb|CEG41393.1|1.601e-2244.07Uncharacterized conserved protein [Plasmopara hals... [more]
gi|301100812|ref|XP_002899495.1|4.241e-2241.88conserved hypothetical protein [Phytophthora infes... [more]
gi|66827883|ref|XP_647296.1|2.055e-2144.55proteasome assembly chaperone 3 [Dictyostelium dis... [more]
gi|330843370|ref|XP_003293629.1|3.523e-2147.52hypothetical protein DICPUDRAFT_158520 [Dictyostel... [more]
gi|1013947991|gb|KYR01656.1|4.202e-2142.86proteasome assembly chaperone 3 [Dictyostelium lac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9605rna9605Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications