EWM21111.1, cds9566 (CDS) Nannochloropsis gaditana

Overview
NameEWM21111.1
Unique Namecds9566
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:256937..257078 -
Alignment locationKK037254.1:256033..256775 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21111.1
Productdehydrogenase reductase sdr family member 12
Orig transcript idgnl|cribi|Naga_100041g39.3681.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:256937..257078 -
KK037254.1supercontigKK037254.1:256033..256775 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002198DH_sc/Rdtase_SDR
IPR016040NAD(P)-bd_dom
IPR002347Glc/ribitol_DH
Homology
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|585101178|gb|EWM21111.1| (dehydrogenase reductase sdr family member 12 [Nannochloropsis gaditana])

HSP 1 Score: 607.831 bits (1566), Expect = 0.000e+0
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
Query:    1 MRLVQYLVLLLLAIITSFIPAVTAFRIDIMISKFIGKHLPDYTYSVPGMLFYFLDPSHTSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGPMQGFYK 294
            MRLVQYLVLLLLAIITSFIPAVTAFRIDIMISKFIGKHLPDYTYSVPGMLFYFLDPSHTSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGPMQGFYK
Sbjct:    1 MRLVQYLVLLLLAIITSFIPAVTAFRIDIMISKFIGKHLPDYTYSVPGMLFYFLDPSHTSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGPMQGFYK 294          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|929281208|ref|XP_014017498.1| (PREDICTED: dehydrogenase/reductase SDR family member 12-like isoform X1 [Salmo salar])

HSP 1 Score: 205.682 bits (522), Expect = 6.187e-61
Identity = 101/236 (42.80%), Postives = 154/236 (65.25%), Query Frame = 0
Query:   59 TSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGPMQGFYK 294
            T   F + +  F ++DL+V++ GRV +I G N+GIGR+ A ++A+ G TVH++CR+++K E A  DI   +GNK++++H++DLS  +++  F   F    K L+VLINNA  + SER + +EG E + ATN++G Y LTRGL+P+L+ +A  R+I V S GML  + +   L+ E  I  YDG  VY+QH R +V++TE WA    H  I  + +HPGWVDTP++  A  M  F++
Sbjct:   23 TRSAFLSAAKHFVEKDLEVSMAGRVFMITGANSGIGRATAMAIAKRGGTVHMVCRNKDKAEEARADIVKESGNKEIYVHILDLSETRKVWEFAEAFKRKYKALNVLINNAGCIMSERDVNAEGLEKSFATNVMGVYILTRGLIPLLEKSAEPRVITVSSGGMLVQKLRTGNLQTE--IGRYDGTMVYAQHKRQQVVMTEQWAK--THSNIHFSVMHPGWVDTPVVAVANAMPDFHQ 254          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|641865133|gb|KDO83818.1| (hypothetical protein CISIN_1g019551mg [Citrus sinensis])

HSP 1 Score: 204.142 bits (518), Expect = 3.406e-60
Identity = 107/268 (39.93%), Postives = 164/268 (61.19%), Query Frame = 0
Query:   25 FRIDI---MISKFIGKHLPDYTYSVPGMLFYFLDPSHTSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAP-SRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGP 288
            FR+ I    +S F+ K      + V G + +      T  GFK  S  F  ED+   + G+  ++ G NAGIG + A+ LA  GATV+++CRS+EKGE A++ I+S TGN++VHL + DLSS+ +I++F N F+   KP+HVL+NNA  +++ R++TSEGFEL  A N+LG Y +T  ++P+L+  AP +R+I V S GM  +       + E N   +DG   Y+++ R +V LTE W++  K + I   S+HPGW +TP +  + P
Sbjct:    8 FRVQISPTQLSMFLLKKWRVAAFGVYGYMNF------TKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHL---TDDLEFNSGSFDGMEQYARNKRVQVALTEKWSEMYKEKGIGFYSMHPGWAETPGVAKSMP 266          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|223648542|gb|ACN11029.1| (Dehydrogenase/reductase SDR family member 12 [Salmo salar])

HSP 1 Score: 203.371 bits (516), Expect = 3.936e-60
Identity = 100/230 (43.48%), Postives = 151/230 (65.65%), Query Frame = 0
Query:   59 TSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGP 288
            T   F + +  F ++DL+V++ GRV +I G N+GIGR+ A ++A+ G TVH++CR+++K E A  DI   +GNK++++H++DLS  +++  F   F    K L+VLINNA  + SER + +EG E + ATN++G Y LTRGL+P+L+ +A  R+I V S GML  + +   L+ E  I  YDG  VY+QH R +V++TE WA    H  I  + +HPGWVDTP + +A P
Sbjct:   18 TRSAFLSAAKHFVEKDLEVSMAGRVFMITGANSGIGRATAMAIAKRGGTVHMVCRNKDKAEEARADIVKESGNKEIYVHILDLSETRKVWEFAEAFKRKYKALNVLINNAGCIMSERDVNAEGLEKSFATNVMGVYILTRGLIPLLEKSAEPRVITVSSGGMLVQKLRTGNLQTE--IGRYDGTMVYAQHKRQQVVMTEQWAK--THSNIHFSVMHPGWVDTPAVANAMP 243          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|929281210|ref|XP_014017499.1| (PREDICTED: dehydrogenase/reductase SDR family member 12-like isoform X2 [Salmo salar] >gi|209155934|gb|ACI34199.1| Dehydrogenase/reductase SDR family member 12 [Salmo salar])

HSP 1 Score: 203.371 bits (516), Expect = 4.536e-60
Identity = 100/230 (43.48%), Postives = 151/230 (65.65%), Query Frame = 0
Query:   59 TSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGP 288
            T   F + +  F ++DL+V++ GRV +I G N+GIGR+ A ++A+ G TVH++CR+++K E A  DI   +GNK++++H++DLS  +++  F   F    K L+VLINNA  + SER + +EG E + ATN++G Y LTRGL+P+L+ +A  R+I V S GML  + +   L+ E  I  YDG  VY+QH R +V++TE WA    H  I  + +HPGWVDTP + +A P
Sbjct:   23 TRSAFLSAAKHFVEKDLEVSMAGRVFMITGANSGIGRATAMAIAKRGGTVHMVCRNKDKAEEARADIVKESGNKEIYVHILDLSETRKVWEFAEAFKRKYKALNVLINNAGCIMSERDVNAEGLEKSFATNVMGVYILTRGLIPLLEKSAEPRVITVSSGGMLVQKLRTGNLQTE--IGRYDGTMVYAQHKRQQVVMTEQWAK--THSNIHFSVMHPGWVDTPAVANAMP 248          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|567883957|ref|XP_006434537.1| (hypothetical protein CICLE_v10001743mg [Citrus clementina] >gi|557536659|gb|ESR47777.1| hypothetical protein CICLE_v10001743mg [Citrus clementina])

HSP 1 Score: 203.371 bits (516), Expect = 5.962e-60
Identity = 107/268 (39.93%), Postives = 164/268 (61.19%), Query Frame = 0
Query:   25 FRIDI---MISKFIGKHLPDYTYSVPGMLFYFLDPSHTSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAP-SRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGP 288
            FR+ I    +S F+ K      + V G + +      T  GFK  S  F  ED+   + G+  ++ G NAGIG + A+ LA  GATV+++CRS+EKGE A++ I+S TGN++VHL + DLSS+ +I++F N F+   KP+HVL+NNA  +++ R++TSEGFEL  A N+LG Y +T  ++P+L+  AP +R+I V S GM  +       + E N   +DG   Y+++ R +V LTE W++  K + I   S+HPGW +TP +  + P
Sbjct:    8 FRVQISPTQLSMFLLKKWRVAAFGVYGYMNF------TKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHL---TDDLEFNSGSFDGMEQYARNKRVQVALTEKWSEMYKEKGIGFYSMHPGWAETPGVAKSMP 266          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|390362445|ref|XP_793972.3| (PREDICTED: dehydrogenase/reductase SDR family member 12 [Strongylocentrotus purpuratus])

HSP 1 Score: 202.986 bits (515), Expect = 1.005e-59
Identity = 99/227 (43.61%), Postives = 148/227 (65.20%), Query Frame = 0
Query:   62 GFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGP 288
            G++  +  FDK  LDV++  +  LI G N+GIG+SAA ++A+ G TVH++CR++ +GE A  +I++ TGN+ V LH+VD+S  +++  F  EFA SGK LHVL+NNA  M +ER +TS G+E   ATN LG Y LT  L+PVL+    SR+I V S GM   +  L  L+ E+  + +DG   Y+   R +V++TE WA   K+ +I   ++HPGW DTP ++++ P
Sbjct:   47 GYEHAAKSFDKAALDVDVSSQAFLITGANSGIGKSAALAVAQRGGTVHMICRNQTRGEEAKKEIETTTGNQKVFLHIVDMSDSQRVSDFAKEFAESGKELHVLVNNAGCMVNEREMTSAGYEFNFATNALGTYILTSHLIPVLQKAENSRVITVSSGGMYTQKLDLNNLQSEKTAT-FDGTMSYANQKRQQVIMTEQWAK--KYPEIKFFTMHPGWADTPAVQNSMP 270          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|1211318337|ref|XP_021438604.1| (dehydrogenase/reductase SDR family member 12-like isoform X1 [Oncorhynchus mykiss])

HSP 1 Score: 202.216 bits (513), Expect = 1.100e-59
Identity = 98/236 (41.53%), Postives = 154/236 (65.25%), Query Frame = 0
Query:   59 TSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGPMQGFYK 294
            T   F + +  F ++DL+V++ GRV +I G N+GIGR+ A ++A+ G TVH++CR+++K E A  DI   +GNK++++H++DLS  +++  F   F    K L+VLINNA  + SER + +EG E + A+N++G Y LT+GL+P+L+ +A  R+I V S GML  + +   L+ E  I  YDG  VY+QH R +V++TE WA    H  +  + +HPGWVDTP++  A  M  F++
Sbjct:   23 TRSAFLSAAKHFVEKDLEVSMAGRVFMITGANSGIGRATAMAIAKRGGTVHMVCRNKDKAEEARADIVKESGNKEIYVHILDLSETRKVWEFAEAFKRKYKALNVLINNAGCIMSERDVNAEGLEKSFASNVMGVYILTKGLIPLLEKSAEPRVITVSSGGMLVQKLRTGNLQTE--IGRYDGTMVYAQHKRQQVVMTEQWAK--THSNVHFSVMHPGWVDTPVVAVANAMPDFHQ 254          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|658836661|ref|XP_008430813.1| (PREDICTED: dehydrogenase/reductase SDR family member 12 [Poecilia reticulata])

HSP 1 Score: 201.445 bits (511), Expect = 1.916e-59
Identity = 100/231 (43.29%), Postives = 149/231 (64.50%), Query Frame = 0
Query:   58 HTSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGP 288
            +T  G++A +  F   DLDVNL  R  ++ G N+GIG++ AQ +A+ G TVH++CR++E+ E A  DI + + N+++H+H+VD+SS +Q+  F   F+ + K LHVLINNA  M ++R LT EG E   ATN LG Y LT  L+P LK     R+I V S GML  +  +  L+ E+    +DG   Y+Q+ R +V+LTE WA +  H++I  +S+HPGW DTP ++S+ P
Sbjct:   17 YTKSGYEAAAKHFSPADLDVNLSDRCFMVTGANSGIGKATAQEIAKRGGTVHMVCRNKERAETAKGDIVAQSKNENIHVHIVDMSSARQVWEFAQSFSQNNK-LHVLINNAGCMVNQRELTEEGLEKNFATNTLGTYILTTALIPTLKKVEDPRVITVSSGGMLTQKLNVDDLQFEKGT--FDGTMAYAQNKRQQVILTERWASQ--HKEIHFSSMHPGWADTPAVQSSMP 242          
BLAST of EWM21111.1 vs. NCBI_GenBank
Match: gi|1158843442|ref|XP_020330486.1| (dehydrogenase/reductase SDR family member 12-like [Oncorhynchus kisutch])

HSP 1 Score: 201.445 bits (511), Expect = 2.572e-59
Identity = 98/230 (42.61%), Postives = 151/230 (65.65%), Query Frame = 0
Query:   59 TSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQSLAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTFTNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGLLPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHRARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGP 288
            T   F + +  F ++DL+V++ GRV +I G N+GIGR+ A ++A+ G TVH++CR+++K E A  DI   +GNK++++H++DLS  +++  F   F    K L+VLINNA  + SER + +EG E + A+N++G Y LTRGL+P+L+ +A  R+I V S GML  + +   L+ E  I  YDG  VY+QH R +V++TE WA    H  +  + +HPGWVDTP + +A P
Sbjct:   23 TRSAFLSAAKHFVEKDLEVSMAGRVFMITGANSGIGRATAMAIAKRGGTVHMVCRNKDKAEEARADIVKESGNKEIYVHILDLSETRKVWEFAEAFKRKYKALNVLINNAGCIMSERDVNAEGLEKSFASNVMGVYILTRGLIPLLEKSAEPRVITVSSGGMLVQKLRTGNLQTE--IGRYDGTMVYAQHKRQQVVMTEQWAK--THSNVHFSVMHPGWVDTPAVANAMP 248          
The following BLAST results are available for this feature:
BLAST of EWM21111.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101178|gb|EWM21111.1|0.000e+0100.00dehydrogenase reductase sdr family member 12 [Nann... [more]
gi|929281208|ref|XP_014017498.1|6.187e-6142.80PREDICTED: dehydrogenase/reductase SDR family memb... [more]
gi|641865133|gb|KDO83818.1|3.406e-6039.93hypothetical protein CISIN_1g019551mg [Citrus sine... [more]
gi|223648542|gb|ACN11029.1|3.936e-6043.48Dehydrogenase/reductase SDR family member 12 [Salm... [more]
gi|929281210|ref|XP_014017499.1|4.536e-6043.48PREDICTED: dehydrogenase/reductase SDR family memb... [more]
gi|567883957|ref|XP_006434537.1|5.962e-6039.93hypothetical protein CICLE_v10001743mg [Citrus cle... [more]
gi|390362445|ref|XP_793972.3|1.005e-5943.61PREDICTED: dehydrogenase/reductase SDR family memb... [more]
gi|1211318337|ref|XP_021438604.1|1.100e-5941.53dehydrogenase/reductase SDR family member 12-like ... [more]
gi|658836661|ref|XP_008430813.1|1.916e-5943.29PREDICTED: dehydrogenase/reductase SDR family memb... [more]
gi|1158843442|ref|XP_020330486.1|2.572e-5942.61dehydrogenase/reductase SDR family member 12-like ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9597rna9597Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications