rna9597, rna9597 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9597
Unique Name	rna9597
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1524
Alignment location	KK037254.1:254445..257406 -

Link to JBrowse

Properties


Property Name	Value
Product	dehydrogenase reductase sdr family member 12
Orig transcript id	gnl\|cribi\|Naga_100041g39.3681.mrna
Orig protein id	gnl\|cribi\|Naga_100041g39.3681
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:254445..257406 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g39	gene9316	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9597	rna9597-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21111.1	cds9566	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:254445..257406-
coding sequence from alignment at KK037254.1:254445..257406-

mRNA sequence

>rna9597 ID=rna9597|Name=rna9597|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
CGTGACAAACGGGGTACCATCATCTTTTATTGTATGAGTCTGCCACCTAA
TCGATAAGATGAGTTGCATTGTTTGCTCTTGGTCGCAACCAAAGTTTATC
TCGTTCGTCTTGGTGTTCATAACAAGCAAGTCAGAAGTAAGCCAGGCAGG
CCTCGATGATACTGACTGCCCGAAGCATTTTCCCACTTTTCTTTTCCAAA
TATCGCCTCGCTCAGGAATATTTTGCGCATCGACATCAGGATAAATCACA
GCCCGCTGAAGTGGATTGGATAAGGGCTGCAAGTGTAGGGTTCCGGTGAT
ATGATTCGAGGTGTGATAATTGTAAACAATCATGGGCGTCCTCGACTGGT
GAAATTGTATCAAAGTGTGATTGGTGAAGAAGCACAACAAAGTGTTATTC
GCAAAGTATTCCAGCAAGTTGCACAGCGGCCGGACTCATTCTGTAACTAC
CTTGATGGGAGTATTCCCGAGTGGGGCGAGGGCGTCAAACTAATATACCG
GCATTACGCTACCCTGTACTTTGTCTTTGCCGTCGATCAACAAGAGAGTG
ACTTGGGTATACTCGACCTCATACAAGTTTTCGTGGAGGCTCTGGATAAA
TGCTTCGAAAACGTTTGCGAGCTGGATCTTATCTTTCATAGCGACAAGGT
TCACTACGTGTTGGACGAGATTATTATGGCCGGGATGGTACTTGAGACGA
ATATAATTCATATTCTTCAAGTCATCAATGATCAGAACCGTCTTCACGCG
CAAAGTCAAAAAACAAGCACTTCAAGCACCAAAGTACGCACTCCAACAAT
CGGTCCAGCTTCTTCGGGAAGGGGAGTGCCTCGCTAGCTCTACATTTTTT
AAAAAGATAATTGTGGACTCAAGAATGCTTTGCTCATAAATATTTCAAGA
CAGACCTCACTATTTCATTTTTGTAGTGTTTGAAGATTCCCCCGGAAACT
TTGACCTATTTCTTAGGAGATCGACTGGTAGTAGTCCTCTGCGAAGCAGA
CATGTAAATTTTCAAATGCCTTGGGAGCAAAGTGCTATTAACCACATCTT
AATGATATGGATGCTGTCTTGACCACATCTTAATGACATAGATGCTTTCT
TGTCCAGTAATTTAAACAGGACCAAATCAACAATCTCCAAGTTTCGTACC
AGTCTTCCTAGTCATGAAACCCTTTTAAGAAACATCTCCATCAAAACCCC
AATGATTTTTCTTTGCTTTTCCCCTTTTTAAGCATTTTCAACTCTTCTTG
TGAGCAGAAAATGGAAAACTCATGAGAATGTTGGAGTAAGATGATGGAGT
TTGTGGAATTTGGCCGCATAGGAGGGTGACATTTTTGAACGCCACTACAT
GTTTTTGTGTTCTGATAACAGGCACTTTCATTAAAAATAAGTCCAACTCA
TTCTCTTGGAGCTACGAGAAAAGTTGTTTCAGGGTGCATATATCTAAAGT
GTATTGTCTTGTTATTAATTTCCGTTGAACTGAATCACACAAAGCAGAGA
TGTCTCTCTGGTGTTCACGACCCC

protein sequence of rna9597

>rna9597-protein ID=rna9597-protein|Name=rna9597|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MRLVQYLVLLLLAIITSFIPAVTAFRIDIMISKFIGKHLPDYTYSVPGML
FYFLDPSHTSLGFKARSLCFDKEDLDVNLRGRVVLIAGGNAGIGRSAAQS
LAELGATVHILCRSREKGERAVTDIQSVTGNKDVHLHVVDLSSLKQIQTF
TNEFAASGKPLHVLINNAATMQSERMLTSEGFELAQATNLLGFYGLTRGL
LPVLKLNAPSRIINVVSAGMLASQFKLKCLEEEENISPYDGAAVYSQHHR
ARVMLTEIWADELKHEKIVVNSVHPGWVDTPLLRSAGPMQGFYK

mRNA from alignment at KK037254.1:254445..257406-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9597 ID=rna9597|Name=rna9597|organism=Nannochloropsis gaditana|type=mRNA|length=2962bp|location=Sequence derived from alignment at KK037254.1:254445..257406- (Nannochloropsis gaditana)
AAAAGCGCTTTGTCAGCACCAGCTTACCTGTAACTAATTGTATGAGTGGT
AAGTGTTTATCACTTCGCGGCGGTGACGTTGTTTGACTGTCCAGCTTCAA
GCAGCGAGCAGAGGCGAACGTCTGTCTCGAAGGAACTTTTTGTGGACCTC
CTGTTCAATTACGAGATGGGAGTCTTTTCAAAGCCACCTAAACAGTGTGA
CACCTCATGGATTCTAACACACCAATATTAAAGCTGGGGTTTAATCACAG
GAGGGCAAGGTCGAGCATCTGCGTGCGATTGCAAGCAAAGATATACCCTG
AGGTGCCTCCAGTGGATGCTGCCGTCGCATGCGCCTAGTCCAGTATCTGG
TCTTACTGTTGCTGGCAATCATCACCTCATTCATTCCTGCTGTTACTGCT
TTCAGGATTGACATAATGATCTCCAAGTTTATCGGCAAGCATCTGCCGGA
TTATACATATTCCGTGCCGGGTAGGTGGATGAAGACAACAGAATGCTTTG
TGGCTGCCTCTGTTCCCTGGGCAGAATCGCATTGATCAATTATAATTAGA
TCATACATGAAGGGAGCATGAAGTGAATTTTGAGCTGAAGCATTCCCTTC
TTATATCTTTTCGATTCTCAATTATGCTTAGGGATGCTTTTCTACTTTCT
AGACCCATCTCATACCTCGTTGGGGTTCAAGGCACGTTCCCTTTGTTTCG
ACAAGGAAGACTTGGATGTTAATTTGAGAGGACGAGTCGTGCTGATTGCC
GGAGGTAATGCTGGTATAGGCAGAAGTGCAGCTCAGTCTTTGGCGGAACT
CGGGGCCACCGTTCACATATTGTGCCGGTCCCGGGAAAAAGGGGAGCGAG
CAGTCACGGATATTCAATCCGTTACAGGAAATAAAGACGTGCATCTACAT
GTGGTTGATCTGTCTTCGTTAAAGCAAATTCAGACATTTACGAATGAATT
CGCAGCGAGCGGCAAGCCTTTGCATGTGCTTATCAATAATGCTGCCACTA
TGCAAAGTGAGCGAATGTTGACATCAGAAGGGTTCGAGCTCGCTCAGGCT
ACCAATTTGCTGGGCTTTTATGGTCTTACTCGCGGCCTTCTTCCTGTTTT
AAAGCTCAATGCACCTTCCCGTATTATAAATGTCGTTTCCGCTGGTATGC
TAGCATCCCAATTCAAGTTAAAATGTCTAGAGGAGGAGGAAAATATTAGT
CCCTATGATGGTGCAGCTGTCTACTCTCAGCACCATCGAGCGCGAGTTAT
GCTTACGGAAATCTGGGCTGATGAGCTGAAACACGAAAAGATCGTAGTTA
ACTCCGTTCATCCAGGTTGGGTTGATACGCCTTTGCTTCGGTCGGCCGGC
CCAATGCAGGGATTTTATAAGTAAGTAATGGAAGAGTCGCTGTATCATAG
AAAAAACTCAAGTCATGACGTCGATTAAAGAATGTGAAAGATGAGTGTGG
GATTTTCTGCTAGCAACCGAATTCTGCGCGAATCTCGTCGCTTGACGAGC
AGACAAAATAAGCACTACATGGGAATTCATTCATAGATTGTCGAATGGCA
CGAAAGTTGAAGCGCGTGCTTTTCATAACCAATTCCTGCTCACAACATTT
AACACACTATCTTTTAAGGCTCATGAGCAAACGTTTGCGATCGGAGTCTC
AGGGTGCAGATACGATAGTTTGGTTGGCAGCTTCTGATAAGGGTGGAAAA
AAGACAGGTAAATACTTCTTCGATCGCAAAGCAAGATGGACAAATCTTCC
ATTTGCGAATACGAAGCCGGAACGGAACGATTACGAAAACCTTATCGACT
TTTGTAAACGTATTATTGGAGACAAGCATGATGCATCTATGAAAGAAAAG
GGGTCGTGAACACCAGAGAGACATCTCTGCTTTGTGTGATTCAGTTCAAC
GGAAATTAATAACAAGACAATACACTTTAGATATATGCACCCTGAAACAA
CTTTTCTCGTAGCTCCAAGAGAATGAGTTGGACTTATTTTTAATGAAAGT
GCCTGTTATCAGAACACAAAAACATGTAGTGGCGTTCAAAAATGTCACCC
TCCTATGCGGCCAAATTCCACAAACTCCATCATCTTACTCCAACATTCTC
ATGAGTTTTCCATTTTCTGCTCACAAGAAGAGTTGAAAATGCTTAAAAAG
GGGAAAAGCAAAGAAAAATCATTGGGGTTTTGATGGAGATGTTTCTTAAA
AGGGTTTCATGACTAGGAAGACTGGTACGAAACTTGGAGATTGTTGATTT
GGTCCTGTTTAAATTACTGGACAAGAAAGCATCTATGTCATTAAGATGTG
GTCAAGACAGCATCCATATCATTAAGATGTGGTTAATAGCACTTTGCTCC
CAAGGCATTTGAAAATTTACATGTCTGCTTCGCAGAGGACTACTACCAGT
CGATCTCCTAAGAAATAGGTCAAAGTTTCCGGGGGAATCTTCAAACACTA
CAAAAATGAAATAGTGAGGTCTGTCTTGAAATATTTATGAGCAAAGCATT
CTTGAGTCCACAATTATCTTTTTAAAAAATGTAGAGCTAGCGAGGCACTC
CCCTTCCCGAAGAAGCTGGACCGATTGTTGGAGTGCGTACTTTGGTGCTT
GAAGTGCTTGTTTTTTGACTTTGCGCGTGAAGACGGTTCTGATCATTGAT
GACTTGAAGAATATGAATTATATTCGTCTCAAGTACCATCCCGGCCATAA
TAATCTCGTCCAACACGTAGTGAACCTGGGAAAAATGTCATAATAATTGA
ATTTCGTAAAATTTCATTGGTAAAAGTACTAGGAGAAATACCTTGAATCG
AAATCGCATACAATACAAACCTTGTCGCTATGAAAGATAAGATCCAGCTC
GCAAACGTTTTCGAAGCATTTATCCAGAGCCTCCACGAAAACTAGGTGCA
ATGAATGGCCAGAATGAATAAAATTCGAAATAATTAAACACAATATCACT
ATCTCTTAAACA

Coding sequence (CDS) from alignment at KK037254.1:254445..257406-

>rna9597 ID=rna9597|Name=rna9597|organism=Nannochloropsis gaditana|type=CDS|length=1770bp|location=Sequence derived from alignment at KK037254.1:254445..257406- (Nannochloropsis gaditana)
GGATGCTTTTCTACTTTCTAGACCCATCTCATACCTCGTTGGGGTTCAAG
GCACGTTCCCTTTGTTTCGACAAGGAAGACTTGGATGTTAATTTGAGAGG
ACGAGTCGTGCTGATTGCCGGAGGTAATGCTGGTATAGGCAGAAGTGCAG
CTCAGTCTTTGGCGGAACTCGGGGCCACCGTTCACATATTGTGCCGGTCC
CGGGAAAAAGGGGAGCGAGCAGTCACGGATATTCAATCCGTTACAGGAAA
TAAAGACGTGCATCTACATGTGGTTGATCTGTCTTCGTTAAAGCAAATTC
AGACATTTACGAATGAATTCGCAGCGAGCGGCAAGCCTTTGCATGTGCTT
ATCAATAATGCTGCCACTATGCAAAGTGAGCGAATGTTGACATCAGAAGG
GTTCGAGCTCGCTCAGGCTACCAATTTGCTGGGCTTTTATGGTCTTACTC
GCGGCCTTCTTCCTGTTTTAAAGCTCAATGCACCTTCCCGTATTATAAAT
GTCGTTTCCGCTGGTATGCTAGCATCCCAATTCAAGTTAAAATGTCTAGA
GGAGGAGGAAAATATTAGTCCCTATGATGGTGCAGCTGTCTACTCTCAGC
ACCATCGAGCGCGAGTTATGCTTACGGAAATCTGGGCTGATGAGCTGAAA
CACGAAAAGATCGTAGTTAACTCCGTTCATCCAGGTTGGGTTGATACGCC
TTTGCTTCGGTCGGCCGGCCCAATGCAGGGATTTTATAAGTAAATGCGCC
TAGTCCAGTATCTGGTCTTACTGTTGCTGGCAATCATCACCTCATTCATT
CCTGCTGTTACTGCTTTCAGGATTGACATAATGATCTCCAAGTTTATCGG
CAAGCATCTGCCGGATTATACATATTCCGTGCCGGGGATGCTTTTCTACT
TTCTAGACCCATCTCATACCTCGTTGGGGTTCAAGGCACGTTCCCTTTGT
TTCGACAAGGAAGACTTGGATGTTAATTTGAGAGGACGAGTCGTGCTGAT
TGCCGGAGGTAATGCTGGTATAGGCAGAAGTGCAGCTCAGTCTTTGGCGG
AACTCGGGGCCACCGTTCACATATTGTGCCGGTCCCGGGAAAAAGGGGAG
CGAGCAGTCACGGATATTCAATCCGTTACAGGAAATAAAGACGTGCATCT
ACATGTGGTTGATCTGTCTTCGTTAAAGCAAATTCAGACATTTACGAATG
AATTCGCAGCGAGCGGCAAGCCTTTGCATGTGCTTATCAATAATGCTGCC
ACTATGCAAAGTGAGCGAATGTTGACATCAGAAGGGTTCGAGCTCGCTCA
GGCTACCAATTTGCTGGGCTTTTATGGTCTTACTCGCGGCCTTCTTCCTG
TTTTAAAGCTCAATGCACCTTCCCGTATTATAAATGTCGTTTCCGCTGGT
ATGCTAGCATCCCAATTCAAGTTAAAATGTCTAGAGGAGGAGGAAAATAT
TAGTCCCTATGATGGTGCAGCTGTCTACTCTCAGCACCATCGAGCGCGAG
TTATGCTTACGGAAATCTGGGCTGATGAGCTGAAACACGAAAAGATCGTA
GTTAACTCCGTTCATCCAGGTTGGGTTGATACGCCTTTGCTTCGGTCGGC
CGGCCCAATGCAGGGATTTTATAAGTAAATGCGCCTAGTCCAGTATCTGG
TCTTACTGTTGCTGGCAATCATCACCTCATTCATTCCTGCTGTTACTGCT
TTCAGGATTGACATAATGATCTCCAAGTTTATCGGCAAGCATCTGCCGGA
TTATACATATTCCGTGCCGG

Synonyms

Publications