EWM21122.1, cds9565 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|585101189|gb|EWM21122.1| (ap-3 complex subunit sigma-2 [Nannochloropsis gaditana]) HSP 1 Score: 369.007 bits (946), Expect = 2.446e-129 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKVRTPTIGPASSGRGVPR 178 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKVRTPTIGPASSGRGVPR Sbjct: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKVRTPTIGPASSGRGVPR 178
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|298708414|emb|CBJ48477.1| (Clathrin assembly complex, small subunit [Ectocarpus siliculosus]) HSP 1 Score: 285.034 bits (728), Expect = 5.974e-96 Identity = 134/156 (85.90%), Postives = 143/156 (91.67%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTS 156 MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI IL INDQNRLHA S K Sbjct: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVG 156
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|224004498|ref|XP_002295900.1| (sigma subunit of clathrin adaptor protein AP3 [Thalassiosira pseudonana CCMP1335] >gi|209585932|gb|ACI64617.1| sigma subunit of clathrin adaptor protein AP3 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 270.396 bits (690), Expect = 2.489e-90 Identity = 126/162 (77.78%), Postives = 141/162 (87.04%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKV 162 MI+G+IIVNN G+PRLVK YQ+V GE+ QQSVIR+VFQQV+ RPDSFCNYL+GS+PEWGE +KLIYRHYATLYFVFAVD QESDLGILDLIQVFVEALDK FENVCELDLIFHSD+VHY+LDEI+M GMVLETNI ILQ INDQ R+H +S K S V Sbjct: 1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMKKVQQSDSV 162
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|397574376|gb|EJK49173.1| (hypothetical protein THAOC_31981 [Thalassiosira oceanica]) HSP 1 Score: 266.929 bits (681), Expect = 5.015e-89 Identity = 126/162 (77.78%), Postives = 140/162 (86.42%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKV 162 MI+G+IIVNN G+PRLVK YQ+V GEE QQSVIR+VFQQV+ RPDSFCNYL+GS+PEWGE KLIYRHYATLYFVFAVD QESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVH++LDEI+M GMVLETNI ILQ I+DQ R+H S KT + V Sbjct: 1 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGPNESV 162
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|1210524379|dbj|GAX17108.1| (AP-3 complex subunit sigma [Fistulifera solaris]) HSP 1 Score: 263.077 bits (671), Expect = 2.140e-87 Identity = 120/152 (78.95%), Postives = 137/152 (90.13%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQS 152 MI+G+IIVNNHG+PRLVK YQSV E QQSVIR+VFQQVA RPDSFCNYL+G+IPEWG+ +KLIYRHYATL+FVFAVD QESDLGILDLIQVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+M GMVLETNI +LQ + DQ+RLH S Sbjct: 1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|397614394|gb|EJK62770.1| (hypothetical protein THAOC_16604 [Thalassiosira oceanica]) HSP 1 Score: 268.47 bits (685), Expect = 3.130e-87 Identity = 126/162 (77.78%), Postives = 140/162 (86.42%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKV 162 MI+G+IIVNN G+PRLVK YQ+V GEE QQSVIR+VFQQV+ RPDSFCNYL+GS+PEWGE KLIYRHYATLYFVFAVD QESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVH++LDEI+M GMVLETNI ILQ I+DQ R+H S KT + V Sbjct: 174 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGPNESV 335
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|676382707|ref|XP_009034632.1| (hypothetical protein AURANDRAFT_21819 [Aureococcus anophagefferens] >gi|323455210|gb|EGB11079.1| hypothetical protein AURANDRAFT_21819 [Aureococcus anophagefferens]) HSP 1 Score: 261.922 bits (668), Expect = 5.576e-87 Identity = 123/157 (78.34%), Postives = 139/157 (88.54%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSV-----IGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQS 152 MI+G+IIVNN+G+ R+ K +QSV E+AQQ V+RKVFQQVAQRPDSFCNYL+GSIPEWG KLIYRHYATLYFVFAVD+ ESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHY+LDEI+MAGMVLETNI+ ILQ +NDQN+LH +S Sbjct: 1 MIKGIIIVNNNGQARICKFFQSVHEEGYSAEDAQQQVVRKVFQQVAQRPDSFCNYLEGSIPEWGATTKLIYRHYATLYFVFAVDELESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYILDEIVMAGMVLETNIVSILQGVNDQNKLHQKS 157
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|1210515872|dbj|GAX25395.1| (AP-3 complex subunit sigma [Fistulifera solaris]) HSP 1 Score: 261.536 bits (667), Expect = 8.510e-87 Identity = 119/152 (78.29%), Postives = 137/152 (90.13%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQS 152 MI+G+IIVNNHG+PRLVK YQSV E QQ+VIR+VFQQVA RPDSFCNYL+G+IPEWG+ +KLIYRHYATL+FVFAVD QESDLGILDLIQVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+M GMVLETNI +LQ + DQ+RLH S Sbjct: 1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQNVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|1072225192|gb|OEU09940.1| (sigma subunit of clathrin adaptor protein AP3 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 261.151 bits (666), Expect = 1.258e-86 Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQS-QKTSTSSTKVR 163 MI+G+IIVNNHG+PRLVK YQSV E+ QQSVIRK+F QV RPDSFCNYL+G +PEWGE VKLIYRHYATL+F+FAVD QESDLGILDLIQVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+M GMVLETNI ILQ I DQ ++ S KT + T+ R Sbjct: 1 MIKGIIIVNNHGKPRLVKFYQSVDSEQQQQSVIRKMFTQVTTRPDSFCNYLEGVVPEWGENVKLIYRHYATLFFIFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNISIILQSIKDQGKMAVDSLNKTDDAKTQNR 164
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|219123803|ref|XP_002182207.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406168|gb|EEC46108.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 258.84 bits (660), Expect = 3.828e-86 Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 0 Query: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLH 149 MI+G+IIVNNHG+PRLVK YQ+V E QQSVIR+VFQQVA RPDSFCNYL+G +PEWG+ +KLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+M GMVLETNI +LQ I DQ ++H Sbjct: 1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149 The following BLAST results are available for this feature:
BLAST of EWM21122.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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