EWM21122.1, cds9565 (CDS) Nannochloropsis gaditana

Overview
NameEWM21122.1
Unique Namecds9565
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:253678..253687 +
Alignment locationKK037254.1:253938..253996 +
Alignment locationKK037254.1:254170..254377 +
Alignment locationKK037254.1:254516..254586 +
Alignment locationKK037254.1:254682..254870 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21122.1
Productap-3 complex subunit sigma-2
Orig transcript idgnl|cribi|Naga_100041g37.3692.mrna
GeneAPS2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:253678..253687 +
KK037254.1supercontigKK037254.1:253938..253996 +
KK037254.1supercontigKK037254.1:254170..254377 +
KK037254.1supercontigKK037254.1:254516..254586 +
KK037254.1supercontigKK037254.1:254682..254870 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0030117membrane coat
GO:0030123AP-3 adaptor complex
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR000804Clathrin_sm-chain_CS
IPR027155APS3
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
Homology
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|585101189|gb|EWM21122.1| (ap-3 complex subunit sigma-2 [Nannochloropsis gaditana])

HSP 1 Score: 369.007 bits (946), Expect = 2.446e-129
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKVRTPTIGPASSGRGVPR 178
            MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKVRTPTIGPASSGRGVPR
Sbjct:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKVRTPTIGPASSGRGVPR 178          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|298708414|emb|CBJ48477.1| (Clathrin assembly complex, small subunit [Ectocarpus siliculosus])

HSP 1 Score: 285.034 bits (728), Expect = 5.974e-96
Identity = 134/156 (85.90%), Postives = 143/156 (91.67%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTS 156
            MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI  IL  INDQNRLHA S K  
Sbjct:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVG 156          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|224004498|ref|XP_002295900.1| (sigma subunit of clathrin adaptor protein AP3 [Thalassiosira pseudonana CCMP1335] >gi|209585932|gb|ACI64617.1| sigma subunit of clathrin adaptor protein AP3 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 270.396 bits (690), Expect = 2.489e-90
Identity = 126/162 (77.78%), Postives = 141/162 (87.04%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKV 162
            MI+G+IIVNN G+PRLVK YQ+V GE+ QQSVIR+VFQQV+ RPDSFCNYL+GS+PEWGE +KLIYRHYATLYFVFAVD QESDLGILDLIQVFVEALDK FENVCELDLIFHSD+VHY+LDEI+M GMVLETNI  ILQ INDQ R+H +S K    S  V
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMKKVQQSDSV 162          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|397574376|gb|EJK49173.1| (hypothetical protein THAOC_31981 [Thalassiosira oceanica])

HSP 1 Score: 266.929 bits (681), Expect = 5.015e-89
Identity = 126/162 (77.78%), Postives = 140/162 (86.42%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKV 162
            MI+G+IIVNN G+PRLVK YQ+V GEE QQSVIR+VFQQV+ RPDSFCNYL+GS+PEWGE  KLIYRHYATLYFVFAVD QESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVH++LDEI+M GMVLETNI  ILQ I+DQ R+H  S KT   +  V
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGPNESV 162          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|1210524379|dbj|GAX17108.1| (AP-3 complex subunit sigma [Fistulifera solaris])

HSP 1 Score: 263.077 bits (671), Expect = 2.140e-87
Identity = 120/152 (78.95%), Postives = 137/152 (90.13%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQS 152
            MI+G+IIVNNHG+PRLVK YQSV  E  QQSVIR+VFQQVA RPDSFCNYL+G+IPEWG+ +KLIYRHYATL+FVFAVD QESDLGILDLIQVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+M GMVLETNI  +LQ + DQ+RLH  S
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|397614394|gb|EJK62770.1| (hypothetical protein THAOC_16604 [Thalassiosira oceanica])

HSP 1 Score: 268.47 bits (685), Expect = 3.130e-87
Identity = 126/162 (77.78%), Postives = 140/162 (86.42%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTKV 162
            MI+G+IIVNN G+PRLVK YQ+V GEE QQSVIR+VFQQV+ RPDSFCNYL+GS+PEWGE  KLIYRHYATLYFVFAVD QESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVH++LDEI+M GMVLETNI  ILQ I+DQ R+H  S KT   +  V
Sbjct:  174 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGPNESV 335          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|676382707|ref|XP_009034632.1| (hypothetical protein AURANDRAFT_21819 [Aureococcus anophagefferens] >gi|323455210|gb|EGB11079.1| hypothetical protein AURANDRAFT_21819 [Aureococcus anophagefferens])

HSP 1 Score: 261.922 bits (668), Expect = 5.576e-87
Identity = 123/157 (78.34%), Postives = 139/157 (88.54%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSV-----IGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQS 152
            MI+G+IIVNN+G+ R+ K +QSV       E+AQQ V+RKVFQQVAQRPDSFCNYL+GSIPEWG   KLIYRHYATLYFVFAVD+ ESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHY+LDEI+MAGMVLETNI+ ILQ +NDQN+LH +S
Sbjct:    1 MIKGIIIVNNNGQARICKFFQSVHEEGYSAEDAQQQVVRKVFQQVAQRPDSFCNYLEGSIPEWGATTKLIYRHYATLYFVFAVDELESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYILDEIVMAGMVLETNIVSILQGVNDQNKLHQKS 157          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|1210515872|dbj|GAX25395.1| (AP-3 complex subunit sigma [Fistulifera solaris])

HSP 1 Score: 261.536 bits (667), Expect = 8.510e-87
Identity = 119/152 (78.29%), Postives = 137/152 (90.13%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQS 152
            MI+G+IIVNNHG+PRLVK YQSV  E  QQ+VIR+VFQQVA RPDSFCNYL+G+IPEWG+ +KLIYRHYATL+FVFAVD QESDLGILDLIQVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+M GMVLETNI  +LQ + DQ+RLH  S
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQNVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|1072225192|gb|OEU09940.1| (sigma subunit of clathrin adaptor protein AP3 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 261.151 bits (666), Expect = 1.258e-86
Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQS-QKTSTSSTKVR 163
            MI+G+IIVNNHG+PRLVK YQSV  E+ QQSVIRK+F QV  RPDSFCNYL+G +PEWGE VKLIYRHYATL+F+FAVD QESDLGILDLIQVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+M GMVLETNI  ILQ I DQ ++   S  KT  + T+ R
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVDSEQQQQSVIRKMFTQVTTRPDSFCNYLEGVVPEWGENVKLIYRHYATLFFIFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNISIILQSIKDQGKMAVDSLNKTDDAKTQNR 164          
BLAST of EWM21122.1 vs. NCBI_GenBank
Match: gi|219123803|ref|XP_002182207.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406168|gb|EEC46108.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 258.84 bits (660), Expect = 3.828e-86
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 0
Query:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLH 149
            MI+G+IIVNNHG+PRLVK YQ+V  E  QQSVIR+VFQQVA RPDSFCNYL+G +PEWG+ +KLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+M GMVLETNI  +LQ I DQ ++H
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149          
The following BLAST results are available for this feature:
BLAST of EWM21122.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101189|gb|EWM21122.1|2.446e-129100.00ap-3 complex subunit sigma-2 [Nannochloropsis gadi... [more]
gi|298708414|emb|CBJ48477.1|5.974e-9685.90Clathrin assembly complex, small subunit [Ectocarp... [more]
gi|224004498|ref|XP_002295900.1|2.489e-9077.78sigma subunit of clathrin adaptor protein AP3 [Tha... [more]
gi|397574376|gb|EJK49173.1|5.015e-8977.78hypothetical protein THAOC_31981 [Thalassiosira oc... [more]
gi|1210524379|dbj|GAX17108.1|2.140e-8778.95AP-3 complex subunit sigma [Fistulifera solaris][more]
gi|397614394|gb|EJK62770.1|3.130e-8777.78hypothetical protein THAOC_16604 [Thalassiosira oc... [more]
gi|676382707|ref|XP_009034632.1|5.576e-8778.34hypothetical protein AURANDRAFT_21819 [Aureococcus... [more]
gi|1210515872|dbj|GAX25395.1|8.510e-8778.29AP-3 complex subunit sigma [Fistulifera solaris][more]
gi|1072225192|gb|OEU09940.1|1.258e-8675.61sigma subunit of clathrin adaptor protein AP3 [Fra... [more]
gi|219123803|ref|XP_002182207.1|3.828e-8680.54predicted protein, partial [Phaeodactylum tricornu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9596rna9596Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications