rna9596, rna9596 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9596
Unique Name	rna9596
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1940
Alignment location	KK037254.1:253378..255557 +

Link to JBrowse

Properties


Property Name	Value
Product	ap-3 complex subunit sigma-2
Orig transcript id	gnl\|cribi\|Naga_100041g37.3692.mrna
Orig protein id	gnl\|cribi\|Naga_100041g37.3692
Gene	APS2
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:253378..255557 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
APS2	gene9315	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9596	rna9596-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21122.1	cds9565	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:253378..255557+
coding sequence from alignment at KK037254.1:253378..255557+

mRNA sequence

>rna9596 ID=rna9596|Name=rna9596|organism=Nannochloropsis gaditana|type=mRNA|length=1940bp
CCTGGCTTCGTACACTACCTGCAGGATAGTGGTGCAGAGCGCTCTGTTAC
CGTATGTATGTGCGAGTCGGCGTAGGGAGAGCATCGATTCTCGTAATATA
TAGCTTAGATAATGGTATAATTTGCTCGTGCCCCTCACAATCTTCGTCTT
TCAACTAAGGTCAATCGTGGGCATTCACCCGTGCGGGGGGGGGTAATGGC
GTAGCCCACCCAAAAGTTGAAATGCTTTCGTAAAACTTACTTATTGATGA
AAAATGATGCTGCTATATACTTGGGTATGATATTTTTGCGCCCAAACCTT
TGGAGAAAATACTGAAATTAACACTTATCAAAGGGAGAGTCGATCGTGTG
ATCCGATCGGAACAGCACGTACGTACACGAGGAAGCATATGCATAAAAAG
AAGTTTGAGCGAAGAAGGGTTCAAATCATACATAGGGAGCGGTTGAAATA
GATGCGCTTATTCCATAAAAGGATTTTCAGTACTTGAGAAGGATGATTGC
AGCAAATACGACGAGGCTGTATCACAAATGCCTCTTCAAAGTTCATCTCC
TGGAGACGGACGTATCTCACTGATTCCCTCCATATAATCCCTTTTTATTG
TCGAGCTTTAAAATTTCTGCCATTAACAACTTATCATTTCGCTGTCATAT
CCTATGTCTAGGGCGCCCATCTTATAGGTCTCGTGTCGGACAATGTCGAT
GACCTCTTCATTTTCCATTACCCCAACTAGTGACATATTAAATTGGGGAG
TCATTGGATGTGGAGATGTTGTCGAAGGCAAGTCGGGCCCTGCTTTTTCC
CGAATTCCAAGCTGCCGTCTTGTCGCTGTAATGCGCCGCAACAAAGCACT
CGCCGAATCCTTCGCTCATCGTCACAATGTGGCATCCTTCTATACGGACG
CACGGGAAATTCTTCGAGATTTAGACGTCGAAGCAATTTACTTGGCCACA
CCTCCAGGCACGCATAAAGACCTTGCACTGTTGTGCGCGGCTGCGGGAAA
GCCGGTATTGGTCGAAAAGCCCATGGCTCGTTCTGCTGCTGAATGCCGCG
CCATGTTATCTGAATTTCAGCATTCAGACTTGCCCTTGTTTGTCGCTTAT
TATCGTCGCCATCTCCCAAAATTTGAGCTCGTCAGAGATATTTTACAAAG
CAAAAACAAACTAGGTCCCATTACGGAGATACGCGCATTTTGTGCGCGGC
CATCTTCAGGATCTGACTGTGAGGAGTGGCGAGTGGACGCCTCGGTGGCC
GGGGGGGGGCTCTTCCTTGATCTGGGAAGCCACATGCTGGATCTGTTGGA
CTGGTGGTTTGGGCCTTTACAGGATGTGAAAGGGCTCGCCGCCTCCACCA
AAGGAAAGGGGTCCTCCTACGACTCCGCTTTGGATGAAGTTGAGACACAC
GTAGAAGATCAAGTGCGCATGCTCTTTCGTACAGGGTCTGGGGCCGTGGG
AGTTGGCTCTTGGAATTTCTCGTCTCATTGCAGCGAGGACTATATCGAGA
TTATTGGGGCTGATGGTGGTGTTAAGTTCTCGGTATTCGATAACGGACCG
GTCTTTCTGAAAAGACGGGGCTGTGGCGAGGAGGACGAAATCGAAGTCAT
CGACAACTTCGGCCCTGACTTCTCTCCCCATGTTCACCTTCCTCTTATCG
CTGCAGTGACAGAAGACCTGCAGGATTGGAAAAGGGCACGGGAAGTGGCC
CGGCAAGGTAGGAGTGTCATGAAGGAAATCTCCGAATGGAGGTGTCGCAG
CACGGGGGCGTCGGCACTGCGCACGAGTGAAGTGATGGACACAGTATTAG
CAGCGTATTACGGAGGGAGTCGAGATGACGCCTTTTGGGAGAGGCCTCAA
AGTTGGAGCAAATCATAACCTTATAAGCAGAATCAGAAGTTTTAACGTAG
GGTTGAGTAATGTGAAAAAAAAACAAGAACGGTAACGTTA

protein sequence of rna9596

>rna9596-protein ID=rna9596-protein|Name=rna9596|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNY
LDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDK
CFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHA
QSQKTSTSSTKVRTPTIGPASSGRGVPR

mRNA from alignment at KK037254.1:253378..255557+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9596 ID=rna9596|Name=rna9596|organism=Nannochloropsis gaditana|type=mRNA|length=2180bp|location=Sequence derived from alignment at KK037254.1:253378..255557+ (Nannochloropsis gaditana)
CGTGACAAACGGGGTACCATCATCTTTTATTGTATGAGTCTGCCACCTAA
TCGATAAGATGAGTTGCATTGTTTGCTCTTGGTCGCAACCAAAGTTTATC
TCGTTCGTCTTGGTGTTCATAACAAGCAAGTCAGAAGTAAGCCAGGCAGG
CCTCGATGATACTGACTGCCCGAAGCATTTTCccacttttcttttccaaa
TATCGCCTCGCTCAGGAATATTTTGCGCATCGACATCAGGATAAATCACA
GCCCGCTGAAGTGGATTGGATAAGGGCTGCAAGTGTAGGGTTCCGGTGAT
ATGATTCGAGGTAAGGTTGTAAGGGATAACGGTATCGTGGACGTAGAATC
ACAAAGGGCGTGTACCCTACTTAAAATTACATGTTCAAATCTTCAAAAGG
TGAATATCAGAAATATTGAACATATGAAGTCAATATGATGAGCTTTCCGG
TCCAGCATTCTGGCTGCTCGCTACTGATTACCATGAAGTGATGCGAGGCA
TTTAGCATCTCGGTGTACGCATGCAGTTTACCAAACCAGAACATCATCCT
GCATTCACAGGTGTGATAATTGTAAACAATCATGGGCGTCCTCGACTGGT
GAAATTGTATCAAAGTGTGGTATGTATTTTCTACGTCAAAGCAATAAAAA
GCTCGTATTTTTTTTTGTATGTAAACTCTTTCCCCGTGCCTGTGCACGCC
TACACATTTTAATTGTGTTGCACGCGCCCCACGTCTGACGCAGACTAAGC
TCTTTGTGCGAttgtctttctccttttaATTGATCATGTCAGATTGGTGA
AGAAGCACAACAAAGTGTTATTCGCAAAGTATTCCAGCAAGTTGCACAGC
GGCCGGACTCATTCTGTAACTACCTTGATGGGAGTATTCCCGAGTGGGGC
GAGGGCGTCAAACTAATATACCGGCATTACGCTACCCTGTACTTTGTCTT
TGCCGTCGATCAACAAGAGAGTGACTTGGGTATACTCGACCTCATACAAG
GTTTGACAAACGATAGAAATCATAAATGCGAGAATCATATTCGTCTTTTT
GCCCATTAGCTTATTGATGTTTAAGAGATAGTGATATTGTGTTTAATTAT
TTCGAATTTTATTCATTCTGGCCATTCATTGCACCTAGTTTTCGTGGAGG
CTCTGGATAAATGCTTCGAAAACGTTTGCGAGCTGGATCTTATCTTTCAT
AGCGACAAGGTTTGTATTGTATGCGATTTCGATTCAAGGTATTTCTCCTA
GTACTTTTACCAATGAAATTTTACGAAATTCAATTATTATGACATTTTTC
CCAGGTTCACTACGTGTTGGACGAGATTATTATGGCCGGGATGGTACTTG
AGACGAATATAATTCATATTCTTCAAGTCATCAATGATCAGAACCGTCTT
CACGCGCAAAGTCAAAAAACAAGCACTTCAAGCACCAAAGTACGCACTCC
AACAATCGGTCCAGCTTCttcgggaaggggagtgcCTCGCTAGCTctaca
ttttttaaaaagatAATTGTGGACTCAAGAATGCTTTGCTCATAAATATT
TCAAGACAGACCTCACTATTTCATTTTTGTAGTGTTTGAAGATTCCCCCG
GAAACTTTGACCTATTTCTTAGGAGATCGACTGGTAGTAGTCCTCTGCGA
AGCAGACATGTAAATTTTCAAATGCCTTGGGAGCAAAGTGCTATTAACCA
CATCTTAATGATATGGATGCTGTCTTGACCACATCTTAATGACATAGATG
CTTTCTTGTCCAGTAATTTAAACAGGACCAAATCAACAATCTCCAAGTTT
CGTACCAGTCTTCCTAGTCATGAAACCCTTTTAAGAAACATCTCCATCAA
AACCCCAATGatttttctttgcttttcccctttttaaGCATTTTCAACTC
TTCTTGTGAgcagaaaatggaaaacTCATGAGAATGTTGGAGTAAGATGA
TGGAGTTTGTGGAATTTGGCCGCATAGGAGGGTGACATTTTTGAACGCCA
CTACATGTTTTTGTGTTCTGATAACAGGCACTTTCATTAAAAATAAGTCC
AACTCATTCTCTTGGAGCTACGAGAAAAGTTGTTTCAGGGTGCATATATC
TAAAGTGTATTGTCTTGTTATTAATTTCCGTTGAACTGAATCACACAAAG
CAGAGATGTCTCTCTGGTGTTCACGacccc

Coding sequence (CDS) from alignment at KK037254.1:253378..255557+

>rna9596 ID=rna9596|Name=rna9596|organism=Nannochloropsis gaditana|type=CDS|length=2685bp|location=Sequence derived from alignment at KK037254.1:253378..255557+ (Nannochloropsis gaditana)
ATGATTCGAGGTGTGATAATTGTAAACAATCATGGGCGTCCTCGACTGGT
GAAATTGTATCAAAGTGTGATTGGTGAAGAAGCACAACAAAGTGTTATTC
GCAAAGTATTCCAGCAAGTTGCACAGCGGCCGGACTCATTCTGTAACTAC
CTTGATGGGAGTATTCCCGAGTGGGGCGAGGGCGTCAAACTAATATACCG
GCATTACGCTACCCTGTACTTTGTCTTTGCCGTCGATCAACAAGAGAGTG
ACTTGGGTATACTCGACCTCATACAAGTTTTCGTGGAGGCTCTGGATAAA
TGCTTCGAAAACGTTTGCGAGCTGGATCTTATCTTTCATAGCGACAAGGT
TCACTACGTGTTGGACGAGATTATTATGGCCGGGATGGTACTTGAGACGA
ATATAATTCATATTCTTCAAGTCATCAATGATCAGAACCGTCTTCACGCG
CAAAGTCAAAAAACAAGCACTTCAAGCACCAAAGTACGCACTCCAACAAT
CGGTCCAGCTTCttcgggaaggggagtgcCTCGCTAGATGATTCGAGGTG
TGATAATTGTAAACAATCATGGGCGTCCTCGACTGGTGAAATTGTATCAA
AGTGTGATTGGTGAAGAAGCACAACAAAGTGTTATTCGCAAAGTATTCCA
GCAAGTTGCACAGCGGCCGGACTCATTCTGTAACTACCTTGATGGGAGTA
TTCCCGAGTGGGGCGAGGGCGTCAAACTAATATACCGGCATTACGCTACC
CTGTACTTTGTCTTTGCCGTCGATCAACAAGAGAGTGACTTGGGTATACT
CGACCTCATACAAGTTTTCGTGGAGGCTCTGGATAAATGCTTCGAAAACG
TTTGCGAGCTGGATCTTATCTTTCATAGCGACAAGGTTCACTACGTGTTG
GACGAGATTATTATGGCCGGGATGGTACTTGAGACGAATATAATTCATAT
TCTTCAAGTCATCAATGATCAGAACCGTCTTCACGCGCAAAGTCAAAAAA
CAAGCACTTCAAGCACCAAAGTACGCACTCCAACAATCGGTCCAGCTTCt
tcgggaaggggagtgcCTCGCTAGATGATTCGAGGTGTGATAATTGTAAA
CAATCATGGGCGTCCTCGACTGGTGAAATTGTATCAAAGTGTGATTGGTG
AAGAAGCACAACAAAGTGTTATTCGCAAAGTATTCCAGCAAGTTGCACAG
CGGCCGGACTCATTCTGTAACTACCTTGATGGGAGTATTCCCGAGTGGGG
CGAGGGCGTCAAACTAATATACCGGCATTACGCTACCCTGTACTTTGTCT
TTGCCGTCGATCAACAAGAGAGTGACTTGGGTATACTCGACCTCATACAA
GTTTTCGTGGAGGCTCTGGATAAATGCTTCGAAAACGTTTGCGAGCTGGA
TCTTATCTTTCATAGCGACAAGGTTCACTACGTGTTGGACGAGATTATTA
TGGCCGGGATGGTACTTGAGACGAATATAATTCATATTCTTCAAGTCATC
AATGATCAGAACCGTCTTCACGCGCAAAGTCAAAAAACAAGCACTTCAAG
CACCAAAGTACGCACTCCAACAATCGGTCCAGCTTCttcgggaaggggag
tgcCTCGCTAGATGATTCGAGGTGTGATAATTGTAAACAATCATGGGCGT
CCTCGACTGGTGAAATTGTATCAAAGTGTGATTGGTGAAGAAGCACAACA
AAGTGTTATTCGCAAAGTATTCCAGCAAGTTGCACAGCGGCCGGACTCAT
TCTGTAACTACCTTGATGGGAGTATTCCCGAGTGGGGCGAGGGCGTCAAA
CTAATATACCGGCATTACGCTACCCTGTACTTTGTCTTTGCCGTCGATCA
ACAAGAGAGTGACTTGGGTATACTCGACCTCATACAAGTTTTCGTGGAGG
CTCTGGATAAATGCTTCGAAAACGTTTGCGAGCTGGATCTTATCTTTCAT
AGCGACAAGGTTCACTACGTGTTGGACGAGATTATTATGGCCGGGATGGT
ACTTGAGACGAATATAATTCATATTCTTCAAGTCATCAATGATCAGAACC
GTCTTCACGCGCAAAGTCAAAAAACAAGCACTTCAAGCACCAAAGTACGC
ACTCCAACAATCGGTCCAGCTTCttcgggaaggggagtgcCTCGCTAGAT
GATTCGAGGTGTGATAATTGTAAACAATCATGGGCGTCCTCGACTGGTGA
AATTGTATCAAAGTGTGATTGGTGAAGAAGCACAACAAAGTGTTATTCGC
AAAGTATTCCAGCAAGTTGCACAGCGGCCGGACTCATTCTGTAACTACCT
TGATGGGAGTATTCCCGAGTGGGGCGAGGGCGTCAAACTAATATACCGGC
ATTACGCTACCCTGTACTTTGTCTTTGCCGTCGATCAACAAGAGAGTGAC
TTGGGTATACTCGACCTCATACAAGTTTTCGTGGAGGCTCTGGATAAATG
CTTCGAAAACGTTTGCGAGCTGGATCTTATCTTTCATAGCGACAAGGTTC
ACTACGTGTTGGACGAGATTATTATGGCCGGGATGGTACTTGAGACGAAT
ATAATTCATATTCTTCAAGTCATCAATGATCAGAACCGTCTTCACGCGCA
AAGTCAAAAAACAAGCACTTCAAGCACCAAAGTACGCACTCCAACAATCG
GTCCAGCTTCttcgggaaggggagtgcCTCGCTAG

Synonyms

Publications