EWM21110.1, cds9557 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21110.1 vs. NCBI_GenBank
Match: gi|585101177|gb|EWM21110.1| (Tetratricopeptide-like helical [Nannochloropsis gaditana]) HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0 Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0
Query: 1 MGCAARFCFYTSVKSYCSRVQTRPVPSLHSRKIGLLRRAHASVTTVAEQELYRDKYVDMLTSLGGDITPSLAQALMGASSVSEATRRGAQMPAPPLDAATVVKAVKKSAEELVAREQPPLSNEALLFLADIFWSGLRMPDVSIPRDQAKAAELWRAAGERGDGEGAYRYAMCLLQGEGAPEHRDRATTLLNELVEKGHVQATYSLAVLLSAQLEDGQPLKRRGGARSRTPPQKKLGMGGKKSAVVVYGLLRRAIAGGVVPAVHNMGNLLAEGAQELPRDDEAALEMFTAGTRRLDAPDTFDFSHCLVAKLREAFPTHRRRRAGGPQERVHACDLALSGPRGRGGLGPRLRASHEGGEVGDATGHV 365
MGCAARFCFYTSVKSYCSRVQTRPVPSLHSRKIGLLRRAHASVTTVAEQELYRDKYVDMLTSLGGDITPSLAQALMGASSVSEATRRGAQMPAPPLDAATVVKAVKKSAEELVAREQPPLSNEALLFLADIFWSGLRMPDVSIPRDQAKAAELWRAAGERGDGEGAYRYAMCLLQGEGAPEHRDRATTLLNELVEKGHVQATYSLAVLLSAQLEDGQPLKRRGGARSRTPPQKKLGMGGKKSAVVVYGLLRRAIAGGVVPAVHNMGNLLAEGAQELPRDDEAALEMFTAGTRRLDAPDTFDFSHCLVAKLREAFPTHRRRRAGGPQERVHACDLALSGPRGRGGLGPRLRASHEGGEVGDATGHV
Sbjct: 1 MGCAARFCFYTSVKSYCSRVQTRPVPSLHSRKIGLLRRAHASVTTVAEQELYRDKYVDMLTSLGGDITPSLAQALMGASSVSEATRRGAQMPAPPLDAATVVKAVKKSAEELVAREQPPLSNEALLFLADIFWSGLRMPDVSIPRDQAKAAELWRAAGERGDGEGAYRYAMCLLQGEGAPEHRDRATTLLNELVEKGHVQATYSLAVLLSAQLEDGQPLKRRGGARSRTPPQKKLGMGGKKSAVVVYGLLRRAIAGGVVPAVHNMGNLLAEGAQELPRDDEAALEMFTAGTRRLDAPDTFDFSHCLVAKLREAFPTHRRRRAGGPQERVHACDLALSGPRGRGGLGPRLRASHEGGEVGDATGHV 365
BLAST of EWM21110.1 vs. NCBI_GenBank
Match: gi|1091410908|gb|OHS93503.1| (hypothetical protein TRFO_11696 [Tritrichomonas foetus]) HSP 1 Score: 63.929 bits (154), Expect = 2.134e-7 Identity = 43/153 (28.10%), Postives = 74/153 (48.37%), Query Frame = 0
Query: 146 DQAKAAELWRAAGERGDGEGAYRYAMCLLQGEGAPEHRDRATTLLNELVEKGHVQATYSLAVLLSAQLEDGQPLKRRGGARSRTPPQKKLGMGGKKSAVVVYGLLRRAIAGGVVPAVHNMGNLLAEGAQELPRDDEAALEMFTAGTRRLDAPD 298
D KA EL+ A E+GD + + QGEG P ++ RA L + +KG+ +A ++L V+ + E+G P + AV +Y + A A G+ A N+G + ++G + +P + E A+++FT ++ D PD
Sbjct: 1071 DYDKAVELYTKAAEQGDADAQLNLGLMYDQGEGVPVNKARAVELYTQAADKGNAKAQFNLGVMYH-KGEEGVP-------------------KDNEKAVELYSM---AAAKGIAQAQFNLGVMYSKGDKNVPVNKEKAVQLFTMAAKQGD-PD 1199 The following BLAST results are available for this feature:
BLAST of EWM21110.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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