rna9588, rna9588 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9588
Unique Name	rna9588
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2069
Alignment location	KK037254.1:237172..239202 +

Link to JBrowse

Properties


Property Name	Value
Product	Tetratricopeptide-like helical
Orig transcript id	gnl\|cribi\|Naga_100041g28.3680.mrna
Orig protein id	gnl\|cribi\|Naga_100041g28.3680
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:237172..239202 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g28	gene9307	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9588	rna9588-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21110.1	cds9557	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:237172..239202+
coding sequence from alignment at KK037254.1:237172..239202+

mRNA sequence

>rna9588 ID=rna9588|Name=rna9588|organism=Nannochloropsis gaditana|type=mRNA|length=2069bp
AACATCGAAATCTGAGAAGGTTTTCCCCAAATGCCGGGCGGCTCAGTCAG
CAACGCGGTCTGGCACCACCGCCCGGCATAGCGGGAGGGAGACGGGCCTG
GGAGGCTCTTCGAGGCCCGCCCACTTGACTGCCACGCTCCTTCAGGCGTT
TCCGGTAAATGTACATCGACCTCATCACTATACTGCGCGATTCGTCTCGC
CCCTTGTAAAGAGGGCGTGGGGATAGGAGCACAGAAAACTCGGAATTACT
GATAGTACGGCAGCGCCCCGACCCGCTCGACCTCAACCTCAATCCCTCAG
ACCGCCTTTTTCTTGCATTTCTGCAACGCTCTTTCTAAACGCACTACAGT
TCATCTTATGATGGCCGGTGGCGTAGCTTTACTGTCTTTTGCGGTGAGGC
AGGCCGTAAGGAGACCAAAATGCGGCAGTGGAGGTGTGCTGCGGCCTTTG
TCGATGCTGTCGAATAGCCATCGTCAAGTTTCACAGCCCCATGGTAGCGC
CCGGCCATCTTCTAGTCTCGGCTCTCTTAACTACGCCCACGTGGCACCAG
ATCCACTAGCGGACCCAGGCGTCTTTGATGACATCAACACGTACTCGTGC
AAACGCCAGACAGGCGTGTCTCTCAAGACATTGCTGGACACGGGGCGAGG
CCATTTACTGCAAAAGAAATATTTTGGCAAAGAGGAAAACACGACGGCTA
GCCAACAAATGCTGCAGCAGGTGGCTTGCTTCCTGCACCGGGAGCTGCCA
ATTCGCTTCGCGCACCGTGTCCGGGACCTCGACGCTATCCCGGTCATGAG
GGAGATGCCCTCGATTCAGCTCGTCAAGACTTGGTACGTCACCTCCTTCC
ACGAAATCCGAAATGCGCCGACGCCTAACACTGTGGCGAAGGAGGCAGAC
TTCGCTGTCTTGCTGAAGAATATCTACGAGCGGCATGCCCCCGTCCTCCT
GACCATGGCCAGGGGCGCCTACGAGCTCCGCCAGAAATACGTGGCGGGCT
CGAGCGAGTTCTACGACTTGGAGGTGCACAACTTCCTCGACGCTTTCTAC
TTGAGTCGCATTGGGATTCGTATGCTGATTGGCCAGTATCTAGAGCTGCG
CGAGCCCCCCAAAGCCGACTATATTGGCCTCTGCTGTCTACGAACGTCTC
CCCGCGATGTCGCCCTGACCGCCATAGACGACGCCAAGTTCATGTGCACG
CGCCAGCACGGCGACGCCCCTGAGGTGACGCTCCACGGGCGCTTGGACCT
GACCTTCGCCTACGTGTCCGAGCACGTTCATTACATCCTGCTGGAGCTCC
TGAAGAATAGCATGCGGGCGACGGCTGAGTTTCATGGGACCGATGACATG
CCTCCCATCCGCATTGTCATCGCAGACGGGGAGGACAATGAGGACGTGGT
TATCAAGGTCTCGGACGAAGGGGGAGGGATCCCGCGCTCGCACATAAGTC
GGATATGGAGCTATCTTTTTACAACCGCGGACCCGGAGATACAGAGAGGC
TTCGTAGACCTTTCGCATCCGGCATCGGACTTTGACACGGCCTCGCCGTT
GGCAGGCCTGGGCTACGGACTGCCGATCAGCAGGGCGTACGCACGCTACT
TTGGAGGCGACCTGTCGATCATGTCCATGGAAGGGTATGGCACCGATGCC
TTCGTGCATTTGAGTCGACTTGGGAACCATGACGAGCCTTTGCCTTGAGC
GCATCCACACGGACAGCGGAGGCTAGAGTTTACGATTTTGGAAGACAAGC
GTGCCTGGGTAGAGGTCGTGGAAAGCTTGGGAGTGGCGGGCTTCCCACAG
GGCCGAGTACGTGAGGAATGGGTTGTATGGGCGCCTTGACGAGTTAAGAA
AGAAGTAAAATTGAAATATCAACCACGCGTCATAACTGCACGTCTAAGAA
AATGAATTGGCGCTGCTTATCACCTTGGAAAGTCACTTCTAGTCAAGCAG
CAAGCAGGAAAGGCAGGCCGACATGCTAAAGAAGCCACCGCTGATAGCTC
TTTAGCTCGGCGCCCTTTCTGATAAGTCAAAGCCAATGCAAACTGGTTAC
CTTTTTCAAATTGTCCATC

protein sequence of rna9588

>rna9588-protein ID=rna9588-protein|Name=rna9588|organism=Nannochloropsis gaditana|type=polypeptide|length=365bp
MGCAARFCFYTSVKSYCSRVQTRPVPSLHSRKIGLLRRAHASVTTVAEQE
LYRDKYVDMLTSLGGDITPSLAQALMGASSVSEATRRGAQMPAPPLDAAT
VVKAVKKSAEELVAREQPPLSNEALLFLADIFWSGLRMPDVSIPRDQAKA
AELWRAAGERGDGEGAYRYAMCLLQGEGAPEHRDRATTLLNELVEKGHVQ
ATYSLAVLLSAQLEDGQPLKRRGGARSRTPPQKKLGMGGKKSAVVVYGLL
RRAIAGGVVPAVHNMGNLLAEGAQELPRDDEAALEMFTAGTRRLDAPDTF
DFSHCLVAKLREAFPTHRRRRAGGPQERVHACDLALSGPRGRGGLGPRLR
ASHEGGEVGDATGHV

mRNA from alignment at KK037254.1:237172..239202+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9588 ID=rna9588|Name=rna9588|organism=Nannochloropsis gaditana|type=mRNA|length=2031bp|location=Sequence derived from alignment at KK037254.1:237172..239202+ (Nannochloropsis gaditana)
TACTATCAGTAATTCCGAGTTTTCTGTGCTCCTATCCCCACGCCCTCTTT
ACAAGGGGCGAGACGAATCGCGCAGTATAGTGATGAGGTCGATGTACATT
TACCGGAAACGCCTGAAGGAGCGTGGCAGTCAAGTGGGCGGGCCTCGAAg
agcctcccaggcccgtctccctcccgctaTGCCGGGCGGTGGTGCCAGAC
CGCGTTGCTGACTGAGCCGCCCGGCATTTGGGGAAAACCTTCTCAGATTT
CGATGTTTTCTTTTAAAACGCATGCAGACAGACGGCTAGCAGCTTACTTT
GGCCACCTTTGACTCCACGTGACACGAGCAGCGGCACTTCATCTCTCCTC
TGCTTTTCGACCAGCCTCCCCACATCGTCACTCTCACGCTGATCAGGGAA
TCGGTTTTGAAGATGGGTTGTGCGGCACGTTTTTGTTTCTACACCAGCGT
AAAGAGCTATTGCAGTCGTGTTCAGACGAGACCTGTACCGTCTTTGCATT
CGCGGTGAGAGCTTGTACAAACTTCCCTGCGACTACCCCGAACTGGCGTA
GGCATGAGGTGGTAGTTTTCGAGCTGATTAAATCCCACTTTTTGCTTGAA
ATATTCTTCACCCTATCTTAGAAAAATCGGGCTTCTGAGGCGCGCACACG
CCAGCGTAACGACCGTTGCCGAACAGGAACTGTATCGAGACAAGTACGTT
GATATGCTAACTTCATTGGGTGGAGATATTACTCCCAGCCTTGCACAGGC
ATTAATGGGTGCCTCCAGTGTTTCAGAAGCGACAAGGCGGGGCGCGCAGa
tgcctgccccccccctggaCGCCGCTACTGTTGTCAAAGCCGTGAAGAAA
AGCgccgaggagctggtggcaAGAGAACAGCCGCCGCTAAGCAACGAggc
ccttctcttccttgccgaCATATTTTGGTCAGGACTTCGGATGCCAGACG
TAAGCATCCCTCGGGACCAAGCCAAAGCGGCGGAGCtgtggcgggcggca
ggggagcggggggatggggagggtgcGTACCGCTATGCCATGTGCTTGCT
CCAAGGTGAAGGGGCGCCCGAACACCGGGACCGTGCGACAACGCTTCTGA
ATGAGCTGGTAGAGAAGGGCCATGTTCAAGCCACCTATAGCTTGGCTGTG
CTGCTCTCGGCACAGCTAGAAGACGGGCAACCGTTGAAACGACGCGGTGG
GGCCAGAAGCAGGACGCCACCTCAAAAGAAATTGGGAATGGGAGGTAAGA
AGTCGGCGGTGGTAGTTTACGGCCTCCTTCGTCGTGCAATTGCGGGCGGC
GTGGTGCCGGCCGTTCATAACATGGGGAATCTCCTGGCTGAGGGTGCTCA
GGAGCTGCCCCGCGACGATGAAGCGGCCTTGGAGATGTTCACGGCAGGTA
CGCGGCGTTTGGATGCACCGGATACTTTTGATTTCTCGCATTGCTTGGTT
GCGAAGCTTAGAGAAGCTTTCCCGACACACCGCAGGCGCCGAGCTGGGGG
ACCCCAAGAGCGTGTACACGCTTGCGACCTGGCTCTGTCAGGGccgcggg
ggcgaggaggactggGACCGCGGCTTCGAGCTTCACATGAAGGCGGCGAA
GTTGGGGATGCCACAGGCCATGTATAACACGGCCACCCACTACTTTTCGG
GCCGAGGGGTGGAGCAAGACATGGCGCAGGCCGCGCACTGGTTCAAGCTA
GCGGCCGAGGCAGGCTTCCCAAAGGCCATGATCAATCTTGGAAACATGCT
TCTGGAAGGTTTTGCCTTTCCCTCGTCTGTCGGTCAAAACCCTGTTGTCG
AGGCGCGCAGTTGGTTTGAGCGAGCGGTGGCGGCTGGGGACGACGCGGGA
AATGACGGTCTGGCCAAGTGCGACTCGCTTGTTGCCGATGAAGGTGACGG
CGAATAAGATCGCAGGAAATTATGATTGTGTATGTATTGTAAAAAAAAGA
ATTTATCAGGTACCAGCTTTAATGCAGATTTCGTTCGTGAATTGGTATCT
TGTGTATCGACTGAAGAGGTCGTGGGTAGGA

Coding sequence (CDS) from alignment at KK037254.1:237172..239202+

>rna9588 ID=rna9588|Name=rna9588|organism=Nannochloropsis gaditana|type=CDS|length=2196bp|location=Sequence derived from alignment at KK037254.1:237172..239202+ (Nannochloropsis gaditana)
ATGGGTTGTGCGGCACGTTTTTGTTTCTACACCAGCGTAAAGAGCTATTG
CAGTCGTGTTCAGACGAGACCTGTACCGTCTTTGCATTCGCGAAAAATCG
GGCTTCTGAGGCGCGCACACGCCAGCGTAACGACCGTTGCCGAACAGGAA
CTGTATCGAGACAAGTACGTTGATATGCTAACTTCATTGGGTGGAGATAT
TACTCCCAGCCTTGCACAGGCATTAATGGGTGCCTCCAGTGTTTCAGAAG
CGACAAGGCGGGGCGCGCAGatgcctgccccccccctggaCGCCGCTACT
GTTGTCAAAGCCGTGAAGAAAAGCgccgaggagctggtggcaAGAGAACA
GCCGCCGCTAAGCAACGAggcccttctcttccttgccgaCATATTTTGGT
CAGGACTTCGGATGCCAGACGTAAGCATCCCTCGGGACCAAGCCAAAGCG
GCGGAGCtgtggcgggcggcaggggagcggggggatggggagggtgcGTA
CCGCTATGCCATGTGCTTGCTCCAAGGTGAAGGGGCGCCCGAACACCGGG
ACCGTGCGACAACGCTTCTGAATGAGCTGGTAGAGAAGGGCCATGTTCAA
GCCACCTATAGCTTGGCTGTGCTGCTCTCGGCACAGCTAGAAGACGGGCA
ACCGTTGAAACGACGCGGTGGGGCCAGAAGCAGGACGCCACCTCAAAAGA
AATTGGGAATGGGAGGTAAGAAGTCGGCGGTGGTAGTTTACGGCCTCCTT
CGTCGTGCAATTGCGGGCGGCGTGGTGCCGGCCGTTCATAACATGGGGAA
TCTCCTGGCTGAGGGTGCTCAGGAGCTGCCCCGCGACGATGAAGCGGCCT
TGGAGATGTTCACGGCAGGTACGCGGCGTTTGGATGCACCGGATACTTTT
GATTTCTCGCATTGCTTGGTTGCGAAGCTTAGAGAAGCTTTCCCGACACA
CCGCAGGCGCCGAGCTGGGGGACCCCAAGAGCGTGTACACGCTTGCGACC
TGGCTCTGTCAGGGccgcgggggcgaggaggactggGACCGCGGCTTCGA
GCTTCACATGAAGGCGGCGAAGTTGGGGATGCCACAGGCCATGTATAAAT
GGGTTGTGCGGCACGTTTTTGTTTCTACACCAGCGTAAAGAGCTATTGCA
GTCGTGTTCAGACGAGACCTGTACCGTCTTTGCATTCGCGAAAAATCGGG
CTTCTGAGGCGCGCACACGCCAGCGTAACGACCGTTGCCGAACAGGAACT
GTATCGAGACAAGTACGTTGATATGCTAACTTCATTGGGTGGAGATATTA
CTCCCAGCCTTGCACAGGCATTAATGGGTGCCTCCAGTGTTTCAGAAGCG
ACAAGGCGGGGCGCGCAGatgcctgccccccccctggaCGCCGCTACTGT
TGTCAAAGCCGTGAAGAAAAGCgccgaggagctggtggcaAGAGAACAGC
CGCCGCTAAGCAACGAggcccttctcttccttgccgaCATATTTTGGTCA
GGACTTCGGATGCCAGACGTAAGCATCCCTCGGGACCAAGCCAAAGCGGC
GGAGCtgtggcgggcggcaggggagcggggggatggggagggtgcGTACC
GCTATGCCATGTGCTTGCTCCAAGGTGAAGGGGCGCCCGAACACCGGGAC
CGTGCGACAACGCTTCTGAATGAGCTGGTAGAGAAGGGCCATGTTCAAGC
CACCTATAGCTTGGCTGTGCTGCTCTCGGCACAGCTAGAAGACGGGCAAC
CGTTGAAACGACGCGGTGGGGCCAGAAGCAGGACGCCACCTCAAAAGAAA
TTGGGAATGGGAGGTAAGAAGTCGGCGGTGGTAGTTTACGGCCTCCTTCG
TCGTGCAATTGCGGGCGGCGTGGTGCCGGCCGTTCATAACATGGGGAATC
TCCTGGCTGAGGGTGCTCAGGAGCTGCCCCGCGACGATGAAGCGGCCTTG
GAGATGTTCACGGCAGGTACGCGGCGTTTGGATGCACCGGATACTTTTGA
TTTCTCGCATTGCTTGGTTGCGAAGCTTAGAGAAGCTTTCCCGACACACC
GCAGGCGCCGAGCTGGGGGACCCCAAGAGCGTGTACACGCTTGCGACCTG
GCTCTGTCAGGGccgcgggggcgaggaggactggGACCGCGGCTTCGAGC
TTCACATGAAGGCGGCGAAGTTGGGGATGCCACAGGCCATGTATAA

Synonyms

Publications