rna9580, rna9580 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9580
Unique Name	rna9580
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1764
Alignment location	KK037254.1:218651..220207 +

Link to JBrowse

Properties


Property Name	Value
Product	8-amino-7-oxononanoate synthase
Orig transcript id	gnl\|cribi\|Naga_100041g20.3671.mrna
Orig protein id	gnl\|cribi\|Naga_100041g20.3671
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:218651..220207 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g20	gene9299	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9580	rna9580-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21101.1	cds9549	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:218651..220207+
coding sequence from alignment at KK037254.1:218651..220207+

mRNA sequence

>rna9580 ID=rna9580|Name=rna9580|organism=Nannochloropsis gaditana|type=mRNA|length=1764bp
ATGTCACTCCTACAAAAACAAGGGAGAAGACTAGGAGGTAAAGCTTTGAG
GGCAACCAGAGACGCGGCCAGCTCAGCCTCCCCCCTCGCACGACCATGGT
GCCGACTGCCATCTGACTTGACAACAACGCGGAGCCAGGTAGCGGCGACG
ATTTTTGCAGTGCTCCTCGCCGTATTGAAGATGGAAAGTGTGGGTGCGTG
GCGCGTTTTACCCATCGGCATCCCCTCAGGGGTATCCAAAATGGGGAGCC
GTGTCGGGCATCCCACTCCGCTTTTCACCTCTCCTCCCCAAAACGTCTTA
CCGGACCCCCCACTGCAAGAGGATAGCAGCGCCAGCGAGATCACTCCCTC
ACCGGTGGTACAGAGTTTCAGTCCCTTCTTGGGCCGGCAGAGGAGAAGAC
CTGGCCTGCTTTTTGAAGAGGAGATCGACTTCTGCCTAGCTGCTCCCTCG
CTGGAAGGGGTAAGCGTGGGCAATAGCAGAGTGGAGATCGCGAAAGTGGT
GAACACTTTTGTAAACCAAGCTGCTAAAAAAATTTTGATTGGGTTCGATT
GCTGCTTCGGAGAGGTGGCAGACGGAGTGAAGGACCGCCTGCGAACTGAC
TTCCTGTCGGGGGACGAAGCATCCGCAGAGGACAGGACCTGCGTAGAAGG
GGCCTGCGCTTTCATTGATGCGGTGGTGGCCCTCTCCCCGTGCTCGGACC
TGGAGGTGAACGCCACCAAGGGGGCCCTCGTTCCCCCCTACACCCAGGCC
TACGCCCGCGTACTCGACACGCTCCTAAGCAACGACTGCGAGCTTCGGCA
CTCGGACTCCAGCGCCCTTTCTACCACTGCTTCTACCGACCCTCCTTCCC
CCCCCCTCAAAGTTCGCCCGCGCGACCGGGACATATGCCTGTCCCTGTAC
GACACCATCACCGGCGCCCCGACCAAGACCAAGGTGCTTAACACCATCTC
CAACCGGGTCTCTCGCACCATGCTTTACGCGGACGAGGACGACGTGGCAA
AGCTCACGAATGAGCTGACCAAAGGAAAGCCGGGCTTCCTGGAGAAGTGG
GTGGGCGGGGAAGAGGGCTGCGACGAGGCCGTCTACTACGGGGCGCTGAT
CGCCTACCTCACGGGCGGATTGGAGGCTCCCGCGCCCGCCGCCATGGGCG
GAGGCTACAGCAACGCCTATCAGCGCTTCACCACCTCGCTCGTCCAGGAG
CTGGGTACACGGTCTGCCTCGGTGGATCCGGAGATGTTCGACGCCTTCGT
GCGCTGGGAGAGCACCCTGCGGAAGAACCTGACTCAGGACATGTGGGACC
GGCACCCGAAGGAACTGACTGGCCAGTGGACGCTGGTGGATTCGGGGCCC
AACCCCGCAGGCGCCACGACCCTCCCAGGCCCCGGGGCGGAGACTGGCAA
GGGGGAACAGCGGTCGGCGAACCTGGTCTTTCGGAGGGACGGCACACTGC
GGGTGCCGCCTGAGTTGGGGATGGACGGAACGTGGAGCTTTGAGCCGGGC
CCAACCCACCTGGACACCATTCGGTTCGAGCTGCGGCAAGGGACGCCCGA
CAACCGAGTCTTGTGCTACACGGGGTACGTGGACCGGGGCCAGCGGATCG
AAACGCGCTTCTCGAAGCGACCCATCAAAATGAAAGGGCGGGTGGTGTTG
CGCGCGCGAGGTGAGGCGAGGTCAAGTGGCAAGTTTTCCATGCAGCTGTG
TAAGAAGAACACGCTTCTGGAGAACTTGGTGGTGGGTTCGACGAGAGGCT
CGGTGCAAGAGTAA

protein sequence of rna9580

>rna9580-protein ID=rna9580-protein|Name=rna9580|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MPCSGPGQGPVATVLTSMKRALQKRASTGKLRRLPETVLPGAVDFTSNDY
LGLARCPELAQRIQNESRRVESLARVHGGPFIGATGSRLLSGTTWYHNEV
ENWLASFFRRESALVFNSGYDLNLGLLACLSRPGDAILFDELVHNSSVMG
LRLGAWRHLHSDSASVSKSKKLHSMVFRHNDVDSLESRLEKARALLGDQA
LLFVAVEAVYSMDGDVAPLSQICDAAARHGACVIVDEAHSTGVLGPGGRG
LVCAEGLEDHPALLCSIHTFGKALGCHGAVLCGPQLLRDYCANYCAPFIY
STASSFHSLASMRLAAEYQEGPEGDRRRSRLHALVHVFRNAMDGALGERE
GSGHRLLPSSTAIQALLVPGNERVTAVAAALQAVGLDVRPLRPPTVPAGK
ERLRVVLHFHNTEEELRILVQRLSDWLNVSLMEGGSGGAGSTGGLDASTH
SSKIPMTMASSICSNGREDFGEPSAISKNRALHLAISRL

mRNA from alignment at KK037254.1:218651..220207+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9580 ID=rna9580|Name=rna9580|organism=Nannochloropsis gaditana|type=mRNA|length=1557bp|location=Sequence derived from alignment at KK037254.1:218651..220207+ (Nannochloropsis gaditana)
ATGCCTTGCTCGGGACCGGGTCAGGGCCCTGTTGCCACAGTCTTAACCTC
TATGAAGCGAGCCTTGCAAAAAAGAGCGTCCACTGGCAAACTTCGCAGGC
TTCCCGAGACGGTACGAGGGTTTTGACGTGTGTTAAATTGGTTTGGCTAC
AGATCGACCCTCACGGTGCACACATGCCTTAATCCGCCACGCACTTAGGT
ATTGCCGGGAGCGGTGGATTTCACCAGCAACGATTATCTAGGCCTGGCTC
GATGCCCTGAACTGGCACAGCGTATTCAAAATGAATCGAGACGCGTAGAG
TCGCTGGCTAGGGTACATGGTGGTCCTTTCATTGGAGCGACGGGTTCTCG
ACTTTTGTCAGGGACCACTTGGTATCACAATGAAGTGGAGAATTGGTTGG
CATCCTTCTTCCGTCGAGAGAGCGCGTTAGTCTTCAATTCTGGATATGAT
CTGAATTTGGGTTTGCTGGCTTGTCTAAGTCGCCCAGGAGATGCAATTTT
ATTCGACGAACTCGTTCACAACTCAAGCGTGATGGGCCTGCGGCTCGGAG
CCTGGCGCCATCTGCACTCTGACTCCGCAAGTGTGTCAAAGTCAAAAAAG
CTTCACTCAATGGTGTTCCGGCACAACGATGTCGACAGTCTAGAATCTCG
CCTAGAGAAGGCTCGCGCCCTTCTGGGCGACCAGGCCCTGCTTTTCGTGG
CAGTGGAGGCCGTCTACTCCATGGACGGGGACGTGGCGCCACTCTCGCAA
ATCTGTGACgctgccgcccgccacggGGCATGTGTGATTGTGGACGAGGC
ACACAGCACGGGCGTGTTGGGTCCGGGGGGTCGAGGTCTGGTGTGCGCGG
AGGGTCTAGAGGACCATCCCGCGTTGCTGTGCTCCATCCACACGTTTGGC
AAAGCCTTGGGCTGCCACGGCGCCGTGCTCTGTGGACCTCAACTTCTGCG
GGACTACTGTGCGAACTACTGCGCTCCATTTATCTACTCGACAGCCTCCT
CATTCCACTCACTGGCCAGCATGCGCCTCGCGGCAGAGTACCAGGAGGGC
CCGGAGGGTGACCGCCGCAGGTCCAGGCTCCATGCTTTGGTGCATGTCTT
CCGAAACGCAATGGATGGGGCtcttggggaaagggaaggaagcgggcatC
GACTGTTGCCTAGCTCTACGGCCATCCAGGCGCTGCTGGTCCCGGGCAAT
GAACGCGTTacggccgtggcggcggccttgcagGCGGTAGGACTGGACGT
CCGGCCCTTACGGCCGCCGACTGTCCccgcagggaaggagagactTAGAG
TCGTGCTCCATTTCCAcaacacggaggaggaattgcGCATTTTGGTCCAG
CGCCTTTCGGACTGGCTCAATGTGAGTTTAATGGAAGGCGGAAGTGGTGG
CGCTGGTAGTACCGGAGGATTGGATGCTTCCACCCATTCCTCGAAGATTC
CAATGACGATGGCTTCATCTATTTGTTCAAATGGTCGGGAAGATTTTGGG
GAGCCTTCTGCAATTTCGAAAAATAGAGCGTTGCACTTAGCAATAAGTCG
ATTGTGA

Coding sequence (CDS) from alignment at KK037254.1:218651..220207+

>rna9580 ID=rna9580|Name=rna9580|organism=Nannochloropsis gaditana|type=CDS|length=2940bp|location=Sequence derived from alignment at KK037254.1:218651..220207+ (Nannochloropsis gaditana)
ATGCCTTGCTCGGGACCGGGTCAGGGCCCTGTTGCCACAGTCTTAACCTC
TATGAAGCGAGCCTTGCAAAAAAGAGCGTCCACTGGCAAACTTCGCAGGC
TTCCCGAGACGGTATTGCCGGGAGCGGTGGATTTCACCAGCAACGATTAT
CTAGGCCTGGCTCGATGCCCTGAACTGGCACAGCGTATTCAAAATGAATC
GAGACGCGTAGAGTCGCTGGCTAGGGTACATGGTGGTCCTTTCATTGGAG
CGACGGGTTCTCGACTTTTGTCAGGGACCACTTGGTATCACAATGAAGTG
GAGAATTGGTTGGCATCCTTCTTCCGTCGAGAGAGCGCGTTAGTCTTCAA
TTCTGGATATGATCTGAATTTGGGTTTGCTGGCTTGTCTAAGTCGCCCAG
GAGATGCAATTTTATTCGACGAACTCGTTCACAACTCAAGCGTGATGGGC
CTGCGGCTCGGAGCCTGGCGCCATCTGCACTCTGACTCCGCAAGTGTGTC
AAAGTCAAAAAAGCTTCACTCAATGGTGTTCCGGCACAACGATGTCGACA
GTCTAGAATCTCGCCTAGAGAAGGCTCGCGCCCTTCTGGGCGACCAGGCC
CTGCTTTTCGTGGCAGTGGAGGCCGTCTACTCCATGGACGGGGACGTGGC
GCCACTCTCGCAAATCTGTGACgctgccgcccgccacggGGCATGTGTGA
TTGTGGACGAGGCACACAGCACGGGCGTGTTGGGTCCGGGGGGTCGAGGT
CTGGTGTGCGCGGAGGGTCTAGAGGACCATCCCGCGTTGCTGTGCTCCAT
CCACACGTTTGGCAAAGCCTTGGGCTGCCACGGCGCCGTGCTCTGTGGAC
CTCAACTTCTGCGGGACTACTGTGCGAACTACTGCGCTCCATTTATCTAC
TCGACAGCCTCCTCATTCCACTCACTGGCCAGCATGCGCCTCGCGGCAGA
GTACCAGGAGGGCCCGGAGGGTGACCGCCGCAGGTCCAGGCTCCATGCTT
TGGTGCATGTCTTCCGAAACGCAATGGATGGGGCtcttggggaaagggaa
ggaagcgggcatCGACTGTTGCCTAGCTCTACGGCCATCCAGGCGCTGCT
GGTCCCGGGCAATGAACGCGTTacggccgtggcggcggccttgcagGCGG
TAGGACTGGACGTCCGGCCCTTACGGCCGCCGACTGTCCccgcagggaag
gagagactTAGAGTCGTGCTCCATTTCCAcaacacggaggaggaattgcG
CATTTTGGTCCAGCGCCTTTCGGACTGGCTCAATGTGAGTTTAATGGAAG
GCGGAAGTGGTGGCGCTGGTAGTACCGGAGGATTGGATGCTTCCACCCAT
TCCTCGAAGATTCCAATGACGATGGCTTCATCTATTTGTTCAAATGGTCG
GGAAGATTTTGGGGAGCCTTCTGCAATTTCGAAAAATAGAGCGTTGCACT
TAGCAATAAGTCGATTGTGAATGCCTTGCTCGGGACCGGGTCAGGGCCCT
GTTGCCACAGTCTTAACCTCTATGAAGCGAGCCTTGCAAAAAAGAGCGTC
CACTGGCAAACTTCGCAGGCTTCCCGAGACGGTATTGCCGGGAGCGGTGG
ATTTCACCAGCAACGATTATCTAGGCCTGGCTCGATGCCCTGAACTGGCA
CAGCGTATTCAAAATGAATCGAGACGCGTAGAGTCGCTGGCTAGGGTACA
TGGTGGTCCTTTCATTGGAGCGACGGGTTCTCGACTTTTGTCAGGGACCA
CTTGGTATCACAATGAAGTGGAGAATTGGTTGGCATCCTTCTTCCGTCGA
GAGAGCGCGTTAGTCTTCAATTCTGGATATGATCTGAATTTGGGTTTGCT
GGCTTGTCTAAGTCGCCCAGGAGATGCAATTTTATTCGACGAACTCGTTC
ACAACTCAAGCGTGATGGGCCTGCGGCTCGGAGCCTGGCGCCATCTGCAC
TCTGACTCCGCAAGTGTGTCAAAGTCAAAAAAGCTTCACTCAATGGTGTT
CCGGCACAACGATGTCGACAGTCTAGAATCTCGCCTAGAGAAGGCTCGCG
CCCTTCTGGGCGACCAGGCCCTGCTTTTCGTGGCAGTGGAGGCCGTCTAC
TCCATGGACGGGGACGTGGCGCCACTCTCGCAAATCTGTGACgctgccgc
ccgccacggGGCATGTGTGATTGTGGACGAGGCACACAGCACGGGCGTGT
TGGGTCCGGGGGGTCGAGGTCTGGTGTGCGCGGAGGGTCTAGAGGACCAT
CCCGCGTTGCTGTGCTCCATCCACACGTTTGGCAAAGCCTTGGGCTGCCA
CGGCGCCGTGCTCTGTGGACCTCAACTTCTGCGGGACTACTGTGCGAACT
ACTGCGCTCCATTTATCTACTCGACAGCCTCCTCATTCCACTCACTGGCC
AGCATGCGCCTCGCGGCAGAGTACCAGGAGGGCCCGGAGGGTGACCGCCG
CAGGTCCAGGCTCCATGCTTTGGTGCATGTCTTCCGAAACGCAATGGATG
GGGCtcttggggaaagggaaggaagcgggcatCGACTGTTGCCTAGCTCT
ACGGCCATCCAGGCGCTGCTGGTCCCGGGCAATGAACGCGTTacggccgt
ggcggcggccttgcagGCGGTAGGACTGGACGTCCGGCCCTTACGGCCGC
CGACTGTCCccgcagggaaggagagactTAGAGTCGTGCTCCATTTCCAc
aacacggaggaggaattgcGCATTTTGGTCCAGCGCCTTTCGGACTGGCT
CAATGTGAGTTTAATGGAAGGCGGAAGTGGTGGCGCTGGTAGTACCGGAG
GATTGGATGCTTCCACCCATTCCTCGAAGATTCCAATGACGATGGCTTCA
TCTATTTGTTCAAATGGTCGGGAAGATTTTGGGGAGCCTTCTGCAATTTC
GAAAAATAGAGCGTTGCACTTAGCAATAAGTCGATTGTGA

Synonyms

Publications