rna9578, rna9578 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9578
Unique Name	rna9578
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1773
Alignment location	KK037254.1:213518..215950 -

Link to JBrowse

Properties


Property Name	Value
Product	eukaryotic translation initiation factor 4e type 2
Orig transcript id	gnl\|cribi\|Naga_100041g17.3711.mrna
Orig protein id	gnl\|cribi\|Naga_100041g17.3711
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:213518..215950 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g17	gene9297	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9578	rna9578-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21141.1	cds9547	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:213518..215950-
coding sequence from alignment at KK037254.1:213518..215950-

mRNA sequence

>rna9578 ID=rna9578|Name=rna9578|organism=Nannochloropsis gaditana|type=mRNA|length=1773bp
CGCACCAATGCGACCTACTCGGGATTCGCGGTTGGAAGGAAGAGGCAAGG
CTGAGAAAGGAGGGCGGGGGCAAGATCGAAGTCGCGTGCCTCGTGAACTA
GAGGCTCCCAGGCGAAAGAAGAGCGAGGAGCGGCCTGCACACCCCTGCCT
TCCGGCACTGTCTGCGAAGGGGGCTACGAAATGACTCACAGAGGAGATCA
TTTGATACGTAGCAACTGATGTGCCAGGCAAACAGTGAAGCATACAGGGA
TGGGGCACAAGGTCGCGGTCAGGGATCTGAACAAGCGGATGGGGGGATGA
ACTCGCTCCTCAGCCCCTCCTCAGCACCAGAATTTGATGCTCCATCTGCA
GCATAGAGGCCGTGGTTATTACTCATTCCTTGCCTACTTCCATGGGAAGT
AAACATTGAGCGACCGTGCTGATCATTTATCCTTGCTGGACAAGGAGGGA
GAGGTCGCAAAAGTTCCTTTCCCCGACTTACACACCCTTGCGCTTCAACC
CGCATTTGCGCGCAAACCGACCCATACACGCCACAGATTTGAGCATCCCT
ACGACGAATATTAGCAGAGCACCATTCACAACCAAAGCACGCTGCGGTGA
TAAACCCGCACCAGGCATGGCGGCCGGAGTGGATGGGATCGTGGCTGGCC
CCGGCGTCACGCCTTTGCAGAGGGGGTTTACCTTTTATTACACGGACAAG
CACAAGGCTGCTGCAGAGACCAATGGAAACTCTGTCGAGCGCGTCGCCTC
TTTTCGAACGGCTGAGGGCTTTTGGCGCGTTTACAATCACATGCTGCGGC
CACATCAGCTGCGAGAAGGCGAAGGAAGGGAGTACCAACTGTTCGTGGAG
GGAGTGAAGCCCAGCGGCGAGGACCCATCCAATTCGAAGGGAGGGCGGCT
GAGCGTCCGGTGCCCGCCAGGCCTCACGTCCCGCTACTGGGAGGAGCTGG
TCATCGCCTTTGTCGGCGAGCAGATCGACGGTGGGGAGGACGAAGTCTGT
GGCGTTATCGTCTCCCCGCGGTCGTCCGGGGACGTGATCTCCATCTGGAA
CCGGCATGCGGGCAACCGGGACTTCCAGGTGAAGCTTGTCAGGCGCCTCA
AGGCCCTCTGGGAGCTGCCACCATTTGTGCCCATGGACTACGCGCGACAC
CGCCCGGAGTCTGGTCAAGGTGGGGGGGGGGGAACGGAAGGGGGAGGAGA
GCGCAAAGGTGCGTGGCGGGCAGCGCGCGTGTTCGGAGCGGGAGGAGGGG
GTGGGGCGCATGGAGGGAGGGAGGGCGGTTATTCCAAGAATTTGGGGCGA
GACCGAGGAGAGCGCGGAATGTTTGAGCGAGGGGAGAGGAGTGCAGAGGG
GGGTGGGCGGCGGGAGGCGTGGCTATCGAGGGAGCGGGCTGGCTCGGCGG
ACAAGGGAGAGTGGAGGAGTCGAGGCAACTCGACCGGGCAACATCACGCG
CCCTCCGAGGGCAAGACAGACGCCGAGGGCTGGGAGGTGGTGCGTGAGAG
GAGGCCGTCTCGATGAGGCGCCCGGGGGCACAGCAATCTCGGTAGGGGAA
AGAAAGAAGGGAGGAACTGCTGCTTATGGTCTGAGACTCTCAAGACAGGA
AGGTGTGGGAGGGCAGCTGTGTACAGCCATGATCGTGTGGAGGCCAAGGC
GTGGGTGGGGGTGGCTGAGTAAAGGAGCAGGGAGGGGAATGACGGGAAGC
TCCCTCAGATGGGGAGGGGGGGGAAAGCGTGTCTACAGTAGGTGAACAAA
GAATCAACGGCTTCGGACGTAAG

protein sequence of rna9578

>rna9578-protein ID=rna9578-protein|Name=rna9578|organism=Nannochloropsis gaditana|type=polypeptide|length=273bp
MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAE
GFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCP
PGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGN
RDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAW
RAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRRE
AWLSRERAGSADKGEWRSRGEAW

mRNA from alignment at KK037254.1:213518..215950-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9578 ID=rna9578|Name=rna9578|organism=Nannochloropsis gaditana|type=mRNA|length=2433bp|location=Sequence derived from alignment at KK037254.1:213518..215950- (Nannochloropsis gaditana)
CGCACCAATGCGACCTACTCGGGATTCGCGGTTGGAAGGAAGAGGCAAGG
CTGAGAAAGGAGGGCGGGGGCAAGATCGAAGTCGCGTGCCTCGTGAACTA
GAGGCTCCCAGGCGAAAGAAGAGCGAGGAGCGGCCTGCACACCCCTGCCT
TCCGGCACTGTCTGCGAAGGGGGCTACGAAATGACTCACAGAGGAGATCA
TTTGATACGTAGCAACTGATGTGCCAGGCAAACAGTGAAGCATACAGGGA
TGGGGCACAAGGTCGCGGTCAGGGATCTGAACAAGCGGATGGGGGGATGA
ACTCGCTCCTCAGCCCCTCCTCAGCACCAGAATTTGATGCTCCATCTGCA
GCATAGAGGCCGTGGTTATTACTCATTCCTTGCCTACTTCCATGGGAAGT
AAACATTGAGCGACCGTGCTGATCATTTATCCTTGCTGGACAAGGAGGGA
GAGGTCGCAAAAGTTCCTTTCCCCGACTTACACACCCTTGCGCTTCAACC
CGCATTTGCGCGCAAACCGACCCATACACGCCACAGATTTGAGCATCCCT
ACGACGAATATTAGCAGAGCACCATTCACAACCAAAGCACGCTGCGGTGA
TAAACCCGCACCAGGCATGGCGGCCGGAGTGGATGGGATCGTGGCTGGCC
CCGGCGTCACGCCTTTGCAGGTAAGCCCCTCAGCCCGTCTGAAAATTCGT
TGCTCTTTTCGAGTTGCTTACACTTATGCGATACCTTACTTTTTTGTCTC
ACCCCTTTTCACAGAGGGGGTTTACCTTTTATTACACGGACAAGCACAAG
GCTGCTGCAGAGGTGAGGCTAATGAAGGATCGGGAGGGTGAGGAAGGCCG
ATGTGTTCGCGTCGTTTCGAGCTGTTTGTCCAGGCGTTTTAAAATTTCCC
CCTCTGGTACTTAGCAACTGCGCCGTGTTGCTTCATCTTTACTCATAAAC
AAATTCGCAGACCAATGGAAACTCTGTCGAGCGCGTCGCCTCTTTTCGAA
CGGCTGAGGGCTTTTGGCGCGTTTACAATCACATGCTGCGGCCACATCAG
CTGCGAGAAGGCGAAGGAAGGGAGTACCAACTGTTCGTGGAGGGAGTGAA
GCCCAGCGGCGAGGACCCATCCAATTCGAAGGGAGGGCGGCTGAGCGTCC
GGTGCCCGCCAGGCCTCACGTCCCGCTACTGGGAGGAGCTGGTCATCGCC
TTTGTCGGCGAGCAGATCGACGGTGGGGAGGACGAAGTCTGTGGCGTTAT
CGTCTCCCCGCGGTCGTCCGGGGACGTGATCTCCATCTGGAACCGGCATG
CGGGCAACCGGGACTTCCAGGTGAAGCTTGTCAGGCGCCTCAAGGCCCTC
TGGGAGCTGCCACCATTTGTGCCCATGGACTACGCGCGACACCGCCCGGA
GTCTGGTCAAGGTGGGGGGGGGGGAACGGAAGGGGGAGGAGAGCGCAAAG
GTGCGTGGCGGGCAGCGCGCGTGTTCGGAGCGGGAGGAGGGGGTGGGGCG
CATGGAGGGAGGGAGGGCGGTTATTCCAAGAATTTGGGGCGAGACCGAGG
AGAGCGCGGAATGTTTGAGCGAGGGGAGAGGAGTGCAGAGGGGGGTGGGC
GGCGGGAGGCGTGGCTATCGAGGGAGCGGGCTGGCTCGGCGGACAAGGGA
GAGTGGAGGAGTCGAGGTGAGGCTTGGTAGCGGGGTGAGAACCTTTTGGA
AAAATGGGCGGGTATGAGAATGGAAGAGGGAAGCTACTAGTTCTAGTATT
GAATAGACGCTGCTCCAGCTAGCCGTCGGCCGCATAATCATGCATGGCCC
TCAGGCCCGTTTCATAGCAGCAAGAATAGGGTGCAGGGAGGGGGGCGGAC
GGGAAGCACGCAAGTGCCCCTCCTCCTCCTCACTCCCATGCCTCTCTCGG
AGATCCTGGACTGCCACCCCCTCGGATTCCTTTCAAAACGGAAGGGCGGT
GACCAGGGCGGGGCCGGACTGACGAGAGGATATTATTCAGAGCGTTTGCT
GCCGACACAGTAAGCGACCCGTCTGAAGTGCGCCCGTCTCACGCTTCTTC
TCCCCTCTCACATCCCTTACCGCCGCCACCGCAGGCAACTCGACCGGGCA
ACATCACGCGCCCTCCGAGGGCAAGACAGACGCCGAGGGCTGGGAGGTGG
TGCGTGAGAGGAGGCCGTCTCGATGAGGCGCCCGGGGGCACAGCAATCTC
GGTAGGGGAAAGAAAGAAGGGAGGAACTGCTGCTTATGGTCTGAGACTCT
CAAGACAGGAAGGTGTGGGAGGGCAGCTGTGTACAGCCATGATCGTGTGG
AGGCCAAGGCGTGGGTGGGGGTGGCTGAGTAAAGGAGCAGGGAGGGGAAT
GACGGGAAGCTCCCTCAGATGGGGAGGGGGGGGAAAGCGTGTCTACAGTA
GGTGAACAAAGAATCAACGGCTTCGGACGTAAG

Coding sequence (CDS) from alignment at KK037254.1:213518..215950-

>rna9578 ID=rna9578|Name=rna9578|organism=Nannochloropsis gaditana|type=CDS|length=2466bp|location=Sequence derived from alignment at KK037254.1:213518..215950- (Nannochloropsis gaditana)
ACCAATGGAAACTCTGTCGAGCGCGTCGCCTCTTTTCGAACGGCTGAGGG
CTTTTGGCGCGTTTACAATCACATGCTGCGGCCACATCAGCTGCGAGAAG
GCGAAGGAAGGGAGTACCAACTGTTCGTGGAGGGAGTGAAGCCCAGCGGC
GAGGACCCATCCAATTCGAAGGGAGGGCGGCTGAGCGTCCGGTGCCCGCC
AGGCCTCACGTCCCGCTACTGGGAGGAGCTGGTCATCGCCTTTGTCGGCG
AGCAGATCGACGGTGGGGAGGACGAAGTCTGTGGCGTTATCGTCTCCCCG
CGGTCGTCCGGGGACGTGATCTCCATCTGGAACCGGCATGCGGGCAACCG
GGACTTCCAGGTGAAGCTTGTCAGGCGCCTCAAGGCCCTCTGGGAGCTGC
CACCATTTGTGCCCATGGACTACGCGCGACACCGCCCGGAGTCTGGTCAA
GGTGGGGGGGGGGGAACGGAAGGGGGAGGAGAGCGCAAAGGTGCGTGGCG
GGCAGCGCGCGTGTTCGGAGCGGGAGGAGGGGGTGGGGCGCATGGAGGGA
GGGAGGGCGGTTATTCCAAGAATTTGGGGCGAGACCGAGGAGAGCGCGGA
ATGTTTGAGCGAGGGGAGAGGAGTGCAGAGGGGGGTGGGCGGCGGGAGGC
GTGGCTATCGAGGGAGCGGGCTGGCTCGGCGGACAAGGGAGAGTGGAGGA
GTCGAGGTGAGGCTTGGTAGAGGGGGTTTACCTTTTATTACACGGACAAG
CACAAGGCTGCTGCAGAGATGGCGGCCGGAGTGGATGGGATCGTGGCTGG
CCCCGGCGTCACGCCTTTGCAGACCAATGGAAACTCTGTCGAGCGCGTCG
CCTCTTTTCGAACGGCTGAGGGCTTTTGGCGCGTTTACAATCACATGCTG
CGGCCACATCAGCTGCGAGAAGGCGAAGGAAGGGAGTACCAACTGTTCGT
GGAGGGAGTGAAGCCCAGCGGCGAGGACCCATCCAATTCGAAGGGAGGGC
GGCTGAGCGTCCGGTGCCCGCCAGGCCTCACGTCCCGCTACTGGGAGGAG
CTGGTCATCGCCTTTGTCGGCGAGCAGATCGACGGTGGGGAGGACGAAGT
CTGTGGCGTTATCGTCTCCCCGCGGTCGTCCGGGGACGTGATCTCCATCT
GGAACCGGCATGCGGGCAACCGGGACTTCCAGGTGAAGCTTGTCAGGCGC
CTCAAGGCCCTCTGGGAGCTGCCACCATTTGTGCCCATGGACTACGCGCG
ACACCGCCCGGAGTCTGGTCAAGGTGGGGGGGGGGGAACGGAAGGGGGAG
GAGAGCGCAAAGGTGCGTGGCGGGCAGCGCGCGTGTTCGGAGCGGGAGGA
GGGGGTGGGGCGCATGGAGGGAGGGAGGGCGGTTATTCCAAGAATTTGGG
GCGAGACCGAGGAGAGCGCGGAATGTTTGAGCGAGGGGAGAGGAGTGCAG
AGGGGGGTGGGCGGCGGGAGGCGTGGCTATCGAGGGAGCGGGCTGGCTCG
GCGGACAAGGGAGAGTGGAGGAGTCGAGGTGAGGCTTGGTAGAGGGGGTT
TACCTTTTATTACACGGACAAGCACAAGGCTGCTGCAGAGATGGCGGCCG
GAGTGGATGGGATCGTGGCTGGCCCCGGCGTCACGCCTTTGCAGACCAAT
GGAAACTCTGTCGAGCGCGTCGCCTCTTTTCGAACGGCTGAGGGCTTTTG
GCGCGTTTACAATCACATGCTGCGGCCACATCAGCTGCGAGAAGGCGAAG
GAAGGGAGTACCAACTGTTCGTGGAGGGAGTGAAGCCCAGCGGCGAGGAC
CCATCCAATTCGAAGGGAGGGCGGCTGAGCGTCCGGTGCCCGCCAGGCCT
CACGTCCCGCTACTGGGAGGAGCTGGTCATCGCCTTTGTCGGCGAGCAGA
TCGACGGTGGGGAGGACGAAGTCTGTGGCGTTATCGTCTCCCCGCGGTCG
TCCGGGGACGTGATCTCCATCTGGAACCGGCATGCGGGCAACCGGGACTT
CCAGGTGAAGCTTGTCAGGCGCCTCAAGGCCCTCTGGGAGCTGCCACCAT
TTGTGCCCATGGACTACGCGCGACACCGCCCGGAGTCTGGTCAAGGTGGG
GGGGGGGGAACGGAAGGGGGAGGAGAGCGCAAAGGTGCGTGGCGGGCAGC
GCGCGTGTTCGGAGCGGGAGGAGGGGGTGGGGCGCATGGAGGGAGGGAGG
GCGGTTATTCCAAGAATTTGGGGCGAGACCGAGGAGAGCGCGGAATGTTT
GAGCGAGGGGAGAGGAGTGCAGAGGGGGGTGGGCGGCGGGAGGCGTGGCT
ATCGAGGGAGCGGGCTGGCTCGGCGGACAAGGGAGAGTGGAGGAGTCGAG
GTGAGGCTTGGTAGAGGGGGTTTACCTTTTATTACACGGACAAGCACAAG
GCTGCTGCAGAGATGGCGGCCGGAGTGGATGGGATCGTGGCTGGCCCCGG
CGTCACGCCTTTGCAG

Synonyms

Publications