EWM21141.1, cds9547 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|585101208|gb|EWM21141.1| (eukaryotic translation initiation factor 4e type 2 [Nannochloropsis gaditana]) HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0
Query: 1 MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGEAW 273
MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGEAW
Sbjct: 1 MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGEAW 273
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|585101207|gb|EWM21140.1| (eukaryotic translation initiation factor 4e type 2 [Nannochloropsis gaditana]) HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0 Identity = 270/272 (99.26%), Postives = 271/272 (99.63%), Query Frame = 0
Query: 1 MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGEA 272
MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRG +
Sbjct: 1 MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGNS 272
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|970644937|gb|KUF85584.1| (Eukaryotic translation initiation factor 4E type 2 [Phytophthora nicotianae]) HSP 1 Score: 157.532 bits (397), Expect = 2.564e-43 Identity = 83/245 (33.88%), Postives = 134/245 (54.69%), Query Frame = 0
Query: 11 GPGVTPLQRGFTFYYTDK---HKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAW 252
G TP+Q ++F+Y + +KA +E+ S++ + F+T + FWR+YNH++RP+ L +Y LF G+KP EDP+N +GG+ VR G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N + ++ ++ + LP FV ++Y RH WR+ + G G + G R S+ + RG++S+ G +R AW
Sbjct: 11 GATETPIQNMYSFWYIKRSTGNKAVSESYEKSIKGLGDFKTVQDFWRIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSLNDN------SSFRNTTLWRSDKNDGNSREGSSSGDRTSSGSR-----------YSRGDKSS--GHQRSAW 233
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|675179729|ref|XP_008898749.1| (hypothetical protein PPTG_06554 [Phytophthora parasitica INRA-310] >gi|566008234|gb|ETI31145.1| hypothetical protein F443_21861 [Phytophthora parasitica P1569] >gi|567945716|gb|ETK71527.1| hypothetical protein L915_21254 [Phytophthora parasitica] >gi|567974376|gb|ETL24971.1| hypothetical protein L916_21121 [Phytophthora parasitica] >gi|568003845|gb|ETL78186.1| hypothetical protein L917_20979 [Phytophthora parasitica] >gi|568033755|gb|ETM31449.1| hypothetical protein L914_20996 [Phytophthora parasitica] >gi|568101735|gb|ETN16421.1| hypothetical protein PPTG_06554 [Phytophthora parasitica INRA-310] >gi|570311912|gb|ETO59860.1| hypothetical protein F444_21883 [Phytophthora parasitica P1976] >gi|570935707|gb|ETP00964.1| hypothetical protein F441_21743 [Phytophthora parasitica CJ01A1] >gi|570965981|gb|ETP29100.1| hypothetical protein F442_21721 [Phytophthora parasitica P10297]) HSP 1 Score: 157.532 bits (397), Expect = 3.063e-43 Identity = 83/245 (33.88%), Postives = 134/245 (54.69%), Query Frame = 0
Query: 11 GPGVTPLQRGFTFYYTDK---HKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAW 252
G TP+Q ++F+Y + +KA +E+ S++ + F+T + FWR+YNH++RP+ L +Y LF G+KP EDP+N +GG+ VR G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N + ++ ++ + LP FV ++Y RH WR+ + G G + G R S+ + RG++S+ G +R AW
Sbjct: 16 GATETPIQNMYSFWYIKRSTGNKAVSESYEKSIKGLGDFKTVQDFWRIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSLNDN------SSFRNTTLWRSDKNDGNSREGSSSGDRTSSGSR-----------YSRGDKSS--GHQRSAW 238
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|698809154|ref|XP_009837606.1| (hypothetical protein H257_12178 [Aphanomyces astaci] >gi|574107307|gb|ETV72820.1| hypothetical protein H257_12178 [Aphanomyces astaci]) HSP 1 Score: 156.762 bits (395), Expect = 1.464e-42 Identity = 73/174 (41.95%), Postives = 110/174 (63.22%), Query Frame = 0
Query: 9 VAGPGVTPLQRGFTFYYTDKHKAAA----ETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
V G P+Q +TF+Y K+ A E+ S++ ++ FRT +GFWRVYNH++RP+ L +Y LF G+KP ED +N +GG+ +R G+ SRYWE+LV+A VGEQ D G +E+CG ++S R + D+IS+WNR+A N + ++ ++ L LP FV ++Y RH
Sbjct: 12 VDTAGEVPIQNTYTFWYMKKNSGKALEDQESYEKSIKEISEFRTVQGFWRVYNHLIRPNDL--PNTTDYHLFKAGIKPMWEDTANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVG-NEICGAVMSIRYNEDIISLWNRNADNSEACYRIRDTMRKLLNLPQFVSLEYKRH 182
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|673038358|ref|XP_008873140.1| (hypothetical protein H310_08979 [Aphanomyces invadans] >gi|574471257|gb|ETV98265.1| hypothetical protein H310_08979 [Aphanomyces invadans]) HSP 1 Score: 155.992 bits (393), Expect = 1.995e-42 Identity = 70/172 (40.70%), Postives = 109/172 (63.37%), Query Frame = 0
Query: 11 GPGVTPLQRGFTFYYTDKHKAAA----ETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
G +P+Q +TF+Y K+ A E+ S++ +A FRT +GFWRVYNH++RP+ L +Y LF G+KP ED +N +GG+ +R G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N + ++ ++ + LP F ++Y RH
Sbjct: 13 ATGESPIQNTYTFWYMKKNSGKALEDQESYEKSIKEIAEFRTVQGFWRVYNHLIRPNDL--PNTTDYHLFKAGIKPMWEDSANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFASLEYKRH 181
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|695377309|ref|XP_009515981.1| (hypothetical protein PHYSODRAFT_309469 [Phytophthora sojae] >gi|348688892|gb|EGZ28706.1| hypothetical protein PHYSODRAFT_309469 [Phytophthora sojae]) HSP 1 Score: 154.451 bits (389), Expect = 3.746e-42 Identity = 68/171 (39.77%), Postives = 111/171 (64.91%), Query Frame = 0
Query: 11 GPGVTPLQRGFTFYYTDK---HKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
G TP+Q ++F+Y + +KA +E+ S++ + F+T + FW++YNH++RP+ L +Y LF G+KP EDP+N +GG+ VR G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N + ++ ++ + LP FV ++Y RH
Sbjct: 12 GSAETPIQNMYSFWYIKRSTGNKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRH 179
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|301118230|ref|XP_002906843.1| (eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4] >gi|262108192|gb|EEY66244.1| eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4]) HSP 1 Score: 154.451 bits (389), Expect = 4.279e-42 Identity = 88/265 (33.21%), Postives = 143/265 (53.96%), Query Frame = 0
Query: 6 DGIVAGPGVT--PLQRGFTFYYTDK---HKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGE 265
+G VA G T P+Q +TF+Y + +KA +E+ S++ + F+T + FW++YNH++RP+ L +Y LF G+KP ED +N +GG+ VR G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N + ++ ++ + LP FV ++Y RH WR+ + G G + G R S+ + RG++S+ G +R +W SR+ S K +
Sbjct: 11 EGKVAEKGTTETPIQNMYTFWYIKRSTGNKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDSANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSLNDN------SSFRNTTLWRSEKNDGTSREGSSGGDRTSSGSR-----------YSRGDKSS--GHQRSSW-SRDNKRSFHKSD 252
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|325180224|emb|CCA14627.1| (eukaryotic initiation factor 4E putative [Albugo laibachii Nc14]) HSP 1 Score: 154.836 bits (390), Expect = 5.338e-42 Identity = 70/174 (40.23%), Postives = 110/174 (63.22%), Query Frame = 0
Query: 6 DGIVAGPGVTPLQRGFTFYYTDKHKA-AAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
D G P+Q +TF+Y ++ A AE+ S++ + F+T +GFW +YNH++RP+ L +Y LF G+KP EDPSN +GG+ VR G+ SRYWE+L++A +GEQ D G +E+CG ++S R + D+IS+WNR+A N + ++ ++ + LP FV ++Y RH
Sbjct: 15 DDDTTGKSDAPIQNMYTFWYMKRNTANKAESYEKSIKELGDFKTVQGFWCIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDPSNRRGGKWMVRMRKGIASRYWEDLILAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRRVLNLPQFVALEYKRH 185
BLAST of EWM21141.1 vs. NCBI_GenBank
Match: gi|470453563|ref|XP_004340748.1| (Eukaryotic initiation factor 4E [Acanthamoeba castellanii str. Neff] >gi|440797622|gb|ELR18705.1| Eukaryotic initiation factor 4E [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 152.525 bits (384), Expect = 1.131e-41 Identity = 71/172 (41.28%), Postives = 110/172 (63.95%), Query Frame = 0
Query: 13 GVTP-----LQRGFTFYYTDKHKAAAETN-GNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
GV P L G+TF++ + A ++ N N+++R+ FR+ EGFW+ YNH++RPH L +Y LF EG+KP ED +N +GG+ +R GL ++YWE+L++A VGEQ G DE+CG++ S R + D++S+WN+ A N+ ++K+ LK + LPP PM+Y H
Sbjct: 57 GVDPEGGHFLSSGYTFWFVRRSGARSQENYANAIKRIGGFRSIEGFWKYYNHLVRPHDL--PNTSDYHLFKEGIKPMWEDDANKRGGKWIIRLKKGLATKYWEDLLLAIVGEQFQVG-DEICGIVCSIRFNEDILSVWNKSADNKQARLKIHETLKTVLNLPPNTPMEYKCH 225 The following BLAST results are available for this feature:
BLAST of EWM21141.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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