rna9571, rna9571 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9571
Unique Name	rna9571
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1377
Alignment location	KK037254.1:199277..201656 -

Link to JBrowse

Properties


Property Name	Value
Product	Rubisco LS methyltransferase, substrate-binding domain protein
Orig transcript id	gnl\|cribi\|Naga_100041g11.3706.mrna
Orig protein id	gnl\|cribi\|Naga_100041g11.3706
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:199277..201656 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g11	gene9292	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9571	rna9571-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21136.1	cds9540	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:199277..201656-
coding sequence from alignment at KK037254.1:199277..201656-

mRNA sequence

>rna9571 ID=rna9571|Name=rna9571|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
ATGTCTGGCGCTGCACAACTCCAGTACGTAGTCGGTGGCCATGACGCAGA
TGGCAAACGGGATGGTATGCTCCGTGCAAAAAACACTCCTCAAGGCGTCG
CAACCTGTATAGCATCAATAAATCTTGCCACCACAGAGCTTCTTAATGTT
CAGGGGAAAGTACATGCCATGCAAGGACTGCGGGCGTGTATTCGGGACGA
GGAAGGCGTGAGCGGGGGTACCGCAGGACTTTTAGGAGGGCCGCTCGACA
ACGGACCTCTGGCCTCCATGGCAACGACAGTAGTCAGCTGCACCTTGCAC
GGGGCAGATGGAAATGGGAGGCCCAGTAATCGCATTCGTGTGTTCTTCTA
CGATAAGTGGGCGGAAGAGATCGGAGACTGCCTCGAAAACAATTGCCTGC
TCTCTCTCACAGGGCCTGGCGAGATGGTCCGGGCGGTGCCAACGGGGGAT
CACGGCTGTGCCTTAGTTGTCGCCCCGCCCGTGCTACTGGGAGCATCTCA
CACGAATACCCCTCGGATAAAGCTTGTTTTGACCCATGAAAAAGGTCCGG
AGCTCACGTTGGACCTGGAGCTCGACCAGAACACGCTTGACGCTCGTGCA
GAGGCGTACAAGTTGGCATGCGGGGGGCGGAGAGGGAGTGCCGGCGTTCA
GGGACATGTGCAAAATGTTGGAGTAGGCGCCTGGCTGCGTGTCCGAGGCT
TGACCATCGGCCCTGCGGGGCGAGGGGAGGGTGGGGATGGGGAAGAGAAG
CTGTGGGCGGGTATGAACGCCTCCCTGATATCCATGCCCGCGAAGTCCTT
TGAAGTGCACAGGGTCGCGGTCCGTTTCCTTCAACGTCTGCGTATGCACC
AGCGTAGGCTTGCAGCACAGGCCCTGCTGAACCAGACCGCCAAGTGTATG
CGGCTGTTCGAGTCCCCGCCACCCCGCACGAGGAAGCACGGGTCCCAGCA
CCCGCTTGCCTACGTCGTGGAGGCTCTAGGATCCAGCACTCCCACCATCT
TCGCCTTGCGCGTGAAGATCGTCGGATGGTGGCCTCAGGACCTCCAGCGG
TTTTGTGTGGAGGACGATGGGAAATGGCGCTTCTTGTTCACGCTCCGATT
GGAGGATGTGACGGGGGCGCTGGACGCCGTGGTCTTCGGGGACGTGGCGG
AATGGTTCTTTGTGGACCGGGGCCTGAGGCCCACGGACTTGGCGGGGGAG
GGAGCCGAGACAAGGGCCTCTTTACAAGCGATCGGAGAGGCGATGGAAGA
GTTCAAAAGACAAGGTTATTTTGATTTCGTGGTTAAGTCCTACCTGACCC
GTGGAGACAGAGGGAGGGAGGGAAAGATGCGAGGGAGAATGGTCAAGCGA
TTTCGCCTTCTGAAGCCTGCAGGCTGA

protein sequence of rna9571

>rna9571-protein ID=rna9571-protein|Name=rna9571|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MYWKSAQAIAEQPFHQIMQQAQNDYCYPWLEGKKLVNARQSHEQSVDDVL
LMCHDRISVGDKEMKMTEHRVNSNMDNEEDEEKRRINRFLTWLRAHGARC
DKIEWPSYATGSQIRGAVALDDINSNEDMVSIPEPLLLTPDVALKDPDIG
KVFEDNLEDFSDEDMLLILLMHERGKGETSFFYPYLATLPRLPDTLLNWN
EEGLSWLQDEGLSLEVFLRESQLTAHYTRLVEEKLKAGWPGLFGEAPDDA
SDSESKGADPYSLENFRFAWLTIQARAFGRRLPYSALIPLCDSFNHANVA
VTYRLEPASVALNREGGRQREEDVRLEGQILFPCPDSRSPPRVFHLSPSG
SNRYKKGEEVFTSYGRRTNAELLLFYGFALLDNEHESVALSMPGIPSPPS
WFQASLSALGTAGSVGGRARSMAEDVLRPSHLLFAGATEVPSELVAYFRA
LTACCSMNEKDVVEQKLDYMQHFPCSRHERDAFSTLGAHMSASLAAFPTS
IEEDEVELLASLAASKGSEGKRREVEPWENKGIRDAGVKGENASCRLAAL
TYRLTRKRVIKHHLELVDKRLAALNATLRMERSQETAFVVTENASERKKK
K

mRNA from alignment at KK037254.1:199277..201656-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9571 ID=rna9571|Name=rna9571|organism=Nannochloropsis gaditana|type=mRNA|length=2380bp|location=Sequence derived from alignment at KK037254.1:199277..201656- (Nannochloropsis gaditana)
GCAATAATCACCTTACCCGTGGGCTGAAGTCAACAGCTTATATCCTCATG
CATAACAGGGGGAAAGGAAACCGCTCCGGTGTTTCCCTATGCACCGGACC
TCATCCTCTAGCTACCTCGTCCTCGCTTTACTTCTACTACTAGCTACCAG
TTCTGAACCGTTTTCTTTTGGCTGGCTTTTTTCGAGGAATAAACTGTCGA
AGAAGGTATGCACCTTGTTTTCCCGGTCTCAAAGCAATCATAATTTCACA
TATGTCAACGTTTTTTGCCATTTTACATCACACAAGTGCGTTGCATAACC
GTACTCTAGGTTACGCATTTCAGAGCTACTAGTGCTCATATGTATTGGAA
ATCTGCACAAGCTATAGCAGAACAGCCTTTCCATCAAATTATGGTGGGCT
CTATTGTGTTTTTGCTATGCCCTCTACTTTTGCACGTGTCAACTCACGTC
TCTACATGCTTTTCCTTTGCTCCATTTCCTTTCAACCTCCAAGCAACAAG
CTCAGAACGATTACTGCTACCCTTGGCTAGAAGGCAAGAAGCTGGTAAAT
GCGAGACAGAGTCATGAGCAATCTGTAGATGACGTACTTTTAATGTGCCA
TGATCGTATCTCAGTTGGTGACAAAGAAATGAAAATGACAGAGCACCGTG
TGAACAGCAACATGGATAACGAAGAAGACGAAGAGAAACGGCGCATAAAT
CGATTTCTGACTTGGCTACGAGCACATGGCGCGCGTTGTGACAAGATTGA
GTGGCCCTCCTACGCCACTGGCAGCCAGATTCGGGGTGCCGTCGCCCTGG
ACGACATCAACAGCAATGAGGACATGGTCAGCATTCCTGAGCCCCTTCTT
CTCACTCCGGACGTAGCTTTGAAGGACCCCGACATTGGCAAAGTCTTCGA
AGATAATCTGGAGGACTTTTCAGATGAGGACATGCTGCTGATCCTCCTGA
TGCATGAACGCGGCAAAGGGGAGACATCCTTCTTCTATCCCTACCTAGCC
ACCTTGCCCCGCCTGCCCGACACCCTCCTGAACTGGAACGAAGAAGGCTT
ATCCTGGCTACAGGATGAGGGCCTAAGCTTGGAGGTCTTCTTGCGGGAGA
GCCAGCTGACCGCTCACTACACCAGGCTGGTTGAGGAGAAGCTGAAGGCG
GGATGGCCGGGGCTGTTTGGTGAAGCCCCAGACGACGCGTCCGACAGCGA
GAGCAAGGGAGCCGACCCATATTCCCTGGAGAATTTCAGGTTTGCCTGGC
TGACTATCCAGGCGCGGGCGTTCGGGCGACGACTGCCGTACTCGGCCCTG
ATTCCGCTTTGCGACTCCTTCAACCACGCAAACGTCGCGGTCACGTACAG
GCTGGAGCCGGCGTCCGTCGCTCTGAACAGAGAGGGCGGGAGGCAGAGAG
AAGAGGATGTGCGCTTGGAAGGACAGATACTATTTCCCTGTCCTGATTCC
AGATCGCCGCCGCGCGTCTTTCACCTGTCCCCCAGCGGAAGCAACCGCTA
CAAGAAAGGAGAGGAGGTTTTCACGTCCTACGGGCGACGCACGAACGCGG
AGCTCCTCCTTTTCTATGGCTTCGCGCTTCTCGACAATGAGCACGAGTCT
GTGGCCTTAAGTATGCCTGGTATCCCCTCCCCACCTTCTTGGTTTCAGGC
CTCCCTCTCGGCGCTGGGCACAGCTGGCAGCGTGGGCGGGAGGGCCCGGT
CCATGGCCGAGGATGTGCTGCGGCCGTCGCACTTACTCTTCGCGGGAGCT
ACAGAAGTGCCGAGTGAGCTGGTTGCCTATTTTCGAGCGCTGACTGCTTG
TTGCAGCATGAATGAAAAGGATGTTGTGGAGCAGAAGCTCGATTACATGC
AGCATTTCCCCTGCTCACGGCACGAGAGGGACGCCTTTTCTACCTTGGGG
GCCCACATGAGTGCCTCGTTGGCAGCTTTCCCCACCTCAATCGAGGAGGA
TGAAGTAGAGCTCCTTGCCAGTTTGGCCGCGTCTAAAGGCAGTGAAGGAA
AACGACGGGAAGTAGAGCCATGGGAAAACAAAGGGATCCGTGATGCAGGG
GTCAAGGGGGAGAATGCAAGTTGTCGACTCGCGGCTCTTACATACCGACT
AACTCGGAAGCGGGTTATCAAACACCATTTAGAACTGGTCGACAAAAGAC
TGGCGGCGCTGAATGCAACTCTAAGAATGGAGAGGAGCCAAGAGACAGCT
TTCGTGGTAACGGAGAATGCCTCGGAAAGAAAAAAGAAGAAATGAAAGTT
GAGATACCCTTGTACTTCACATAGCTACTTCGGCCAATTCTCAAATGGAC
TTGGCGACTGTGGCAAATCTTATGCAACGCCAGTCTTAAATTACACAGGT
TACCGCCAGCAAGATTGTCCTACTTGGATG

Coding sequence (CDS) from alignment at KK037254.1:199277..201656-

>rna9571 ID=rna9571|Name=rna9571|organism=Nannochloropsis gaditana|type=CDS|length=3612bp|location=Sequence derived from alignment at KK037254.1:199277..201656- (Nannochloropsis gaditana)
CAACAAGCTCAGAACGATTACTGCTACCCTTGGCTAGAAGGCAAGAAGCT
GGTAAATGCGAGACAGAGTCATGAGCAATCTGTAGATGACGTACTTTTAA
TGTGCCATGATCGTATCTCAGTTGGTGACAAAGAAATGAAAATGACAGAG
CACCGTGTGAACAGCAACATGGATAACGAAGAAGACGAAGAGAAACGGCG
CATAAATCGATTTCTGACTTGGCTACGAGCACATGGCGCGCGTTGTGACA
AGATTGAGTGGCCCTCCTACGCCACTGGCAGCCAGATTCGGGGTGCCGTC
GCCCTGGACGACATCAACAGCAATGAGGACATGGTCAGCATTCCTGAGCC
CCTTCTTCTCACTCCGGACGTAGCTTTGAAGGACCCCGACATTGGCAAAG
TCTTCGAAGATAATCTGGAGGACTTTTCAGATGAGGACATGCTGCTGATC
CTCCTGATGCATGAACGCGGCAAAGGGGAGACATCCTTCTTCTATCCCTA
CCTAGCCACCTTGCCCCGCCTGCCCGACACCCTCCTGAACTGGAACGAAG
AAGGCTTATCCTGGCTACAGGATGAGGGCCTAAGCTTGGAGGTCTTCTTG
CGGGAGAGCCAGCTGACCGCTCACTACACCAGGCTGGTTGAGGAGAAGCT
GAAGGCGGGATGGCCGGGGCTGTTTGGTGAAGCCCCAGACGACGCGTCCG
ACAGCGAGAGCAAGGGAGCCGACCCATATTCCCTGGAGAATTTCAGGTTT
GCCTGGCTGACTATCCAGGCGCGGGCGTTCGGGCGACGACTGCCGTACTC
GGCCCTGATTCCGCTTTGCGACTCCTTCAACCACGCAAACGTCGCGGTCA
CGTACAGGCTGGAGCCGGCGTCCGTCGCTCTGAACAGAGAGGGCGGGAGG
CAGAGAGAAGAGGATGTGCGCTTGGAAGGACAGATACTATTTCCCTGTCC
TGATTCCAGATCGCCGCCGCGCGTCTTTCACCTGTCCCCCAGCGGAAGCA
ACCGCTACAAGAAAGGAGAGGAGGTTTTCACGTCCTACGGGCGACGCACG
AACGCGGAGCTCCTCCTTTTCTATGGCTTCGCGCTTCTCGACAATGAGCA
CGAGTCTGTGGCCTTAAGTATGCCTGGTATCCCCTCCCCACCTTCTTGGT
TTCAGGCCTCCCTCTCGGCGCTGGGCACAGCTGGCAGCGTGGGCGGGAGG
GCCCGGTCCATGGCCGAGGATGTGCTGCGGCCGTCGCACTTACTCTTCGC
GGGAGCTACAGAAGTGCCGAGTGAGCTGGTTGCCTATTTTCGAGCGCTGA
CTGCTTGTTGCAGCATGAATGAAAAGGATGTTGTGGAGCAGAAGCTCGAT
TACATGCAGCATTTCCCCTGCTCACGGCACGAGAGGGACGCCTTTTCTAC
CTTGGGGGCCCACATGAGTGCCTCGTTGGCAGCTTTCCCCACCTCAATCG
AGGAGGATGAAGTAGAGCTCCTTGCCAGTTTGGCCGCGTCTAAAGGCAGT
GAAGGAAAACGACGGGAAGTAGAGCCATGGGAAAACAAAGGGATCCGTGA
TGCAGGGGTCAAGGGGGAGAATGCAAGTTGTCGACTCGCGGCTCTTACAT
ACCGACTAACTCGGAAGCGGGTTATCAAACACCATTTAGAACTGGTCGAC
AAAAGACTGGCGGCGCTGAATGCAACTCTAAGAATGGAGAGGAGCCAAGA
GACAGCTTTCGTGGTAACGGAGAATGCCTCGGAAAGAAAAAAGAAGAAAT
GAATGTATTGGAAATCTGCACAAGCTATAGCAGAACAGCCTTTCCATCAA
ATTATGCAACAAGCTCAGAACGATTACTGCTACCCTTGGCTAGAAGGCAA
GAAGCTGGTAAATGCGAGACAGAGTCATGAGCAATCTGTAGATGACGTAC
TTTTAATGTGCCATGATCGTATCTCAGTTGGTGACAAAGAAATGAAAATG
ACAGAGCACCGTGTGAACAGCAACATGGATAACGAAGAAGACGAAGAGAA
ACGGCGCATAAATCGATTTCTGACTTGGCTACGAGCACATGGCGCGCGTT
GTGACAAGATTGAGTGGCCCTCCTACGCCACTGGCAGCCAGATTCGGGGT
GCCGTCGCCCTGGACGACATCAACAGCAATGAGGACATGGTCAGCATTCC
TGAGCCCCTTCTTCTCACTCCGGACGTAGCTTTGAAGGACCCCGACATTG
GCAAAGTCTTCGAAGATAATCTGGAGGACTTTTCAGATGAGGACATGCTG
CTGATCCTCCTGATGCATGAACGCGGCAAAGGGGAGACATCCTTCTTCTA
TCCCTACCTAGCCACCTTGCCCCGCCTGCCCGACACCCTCCTGAACTGGA
ACGAAGAAGGCTTATCCTGGCTACAGGATGAGGGCCTAAGCTTGGAGGTC
TTCTTGCGGGAGAGCCAGCTGACCGCTCACTACACCAGGCTGGTTGAGGA
GAAGCTGAAGGCGGGATGGCCGGGGCTGTTTGGTGAAGCCCCAGACGACG
CGTCCGACAGCGAGAGCAAGGGAGCCGACCCATATTCCCTGGAGAATTTC
AGGTTTGCCTGGCTGACTATCCAGGCGCGGGCGTTCGGGCGACGACTGCC
GTACTCGGCCCTGATTCCGCTTTGCGACTCCTTCAACCACGCAAACGTCG
CGGTCACGTACAGGCTGGAGCCGGCGTCCGTCGCTCTGAACAGAGAGGGC
GGGAGGCAGAGAGAAGAGGATGTGCGCTTGGAAGGACAGATACTATTTCC
CTGTCCTGATTCCAGATCGCCGCCGCGCGTCTTTCACCTGTCCCCCAGCG
GAAGCAACCGCTACAAGAAAGGAGAGGAGGTTTTCACGTCCTACGGGCGA
CGCACGAACGCGGAGCTCCTCCTTTTCTATGGCTTCGCGCTTCTCGACAA
TGAGCACGAGTCTGTGGCCTTAAGTATGCCTGGTATCCCCTCCCCACCTT
CTTGGTTTCAGGCCTCCCTCTCGGCGCTGGGCACAGCTGGCAGCGTGGGC
GGGAGGGCCCGGTCCATGGCCGAGGATGTGCTGCGGCCGTCGCACTTACT
CTTCGCGGGAGCTACAGAAGTGCCGAGTGAGCTGGTTGCCTATTTTCGAG
CGCTGACTGCTTGTTGCAGCATGAATGAAAAGGATGTTGTGGAGCAGAAG
CTCGATTACATGCAGCATTTCCCCTGCTCACGGCACGAGAGGGACGCCTT
TTCTACCTTGGGGGCCCACATGAGTGCCTCGTTGGCAGCTTTCCCCACCT
CAATCGAGGAGGATGAAGTAGAGCTCCTTGCCAGTTTGGCCGCGTCTAAA
GGCAGTGAAGGAAAACGACGGGAAGTAGAGCCATGGGAAAACAAAGGGAT
CCGTGATGCAGGGGTCAAGGGGGAGAATGCAAGTTGTCGACTCGCGGCTC
TTACATACCGACTAACTCGGAAGCGGGTTATCAAACACCATTTAGAACTG
GTCGACAAAAGACTGGCGGCGCTGAATGCAACTCTAAGAATGGAGAGGAG
CCAAGAGACAGCTTTCGTGGTAACGGAGAATGCCTCGGAAAGAAAAAAGA
AGAAATGAATGTATTGGAAATCTGCACAAGCTATAGCAGAACAGCCTTTC
CATCAAATTATG

Synonyms

Publications